Factsheet for Solyc07g047950.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015696	Potato	cytosol	95.78	97.57
VIT_12s0057g00560.t01	Wine grape	cytosol	75.41	75.41
KRH14104	Soybean	cytosol	73.03	73.03
KRH74015	Soybean	cytosol	72.48	73.01
GSMUA_Achr4P07010_001	Banana	cytosol	43.49	72.26
AT5G48150.4	Thale cress	cytosol	63.49	70.61
CDX86324	Canola	cytosol, nucleus, plastid	64.22	70.42
CDY54511	Canola	cytosol, nucleus, plastid	63.85	70.02
Bra036185.1-P	Field mustard	cytosol	62.2	68.48
CDY19966	Canola	cytosol	62.02	68.42
Bra020715.1-P	Field mustard	cytosol, plastid	62.39	68.41
CDY00074	Canola	cytosol, plastid	62.39	68.41
CDY05700	Canola	cytosol, plastid	62.39	68.41
CDY71174	Canola	cytosol, plastid	62.39	68.41
GSMUA_Achr4P11050_001	Banana	nucleus	46.05	63.22
Solyc07g065270.1.1	Tomato	nucleus	61.83	62.64
GSMUA_AchrUn_...	Banana	nucleus	49.17	62.62
TraesCS5A01G414000.1	Wheat	cytosol	48.62	62.21
TraesCS5A01G409800.1	Wheat	nucleus, plastid	55.6	60.48
Solyc06g035620.2.1	Tomato	cytosol	35.78	59.82
TraesCS5D01G419400.2	Wheat	cytosol	57.8	57.27
Os03t0193000-01	Rice	plastid	56.15	57.2
Zm00001d030500_P001	Maize	nucleus	56.51	56.83
Os07t0583600-01	Rice	plasma membrane	56.7	56.8
TraesCS2B01G217500.1	Wheat	cytosol	57.43	56.5
HORVU2Hr1G036280.1	Barley	cytosol	57.43	56.19
TraesCS2A01G189600.1	Wheat	cytosol	56.88	55.96
TraesCS2D01G198200.1	Wheat	cytosol	56.88	55.86
EER97449	Sorghum	cytosol	55.96	55.76
EER95348	Sorghum	cytosol	54.68	55.6
Zm00001d006701_P001	Maize	cytosol	56.33	55.42
Zm00001d048199_P001	Maize	mitochondrion, nucleus	54.5	55.41
HORVU4Hr1G071670.1	Barley	cytosol	54.31	55.22
TraesCS4D01G266400.1	Wheat	cytosol	54.31	55.22
Solyc11g012510.1.1	Tomato	mitochondrion	54.86	55.17
Zm00001d021946_P001	Maize	cytosol	56.15	54.84
TraesCS4B01G266700.1	Wheat	cytosol	53.76	54.56
TraesCS4A01G039000.1	Wheat	nucleus	48.44	53.99
Solyc04g014830.1.1	Tomato	mitochondrion	52.66	51.9
HORVU5Hr1G099160.1	Barley	plastid	58.17	50.32
Solyc12g005340.1.1	Tomato	cytosol	47.89	46.77
Solyc07g063940.1.1	Tomato	cytosol, nucleus, peroxisome	49.17	45.97
Solyc04g064550.1.1	Tomato	mitochondrion	41.65	40.32
Solyc05g054170.2.1	Tomato	mitochondrion, nucleus	24.04	39.34
Solyc04g011630.1.1	Tomato	cytosol	9.54	30.59
Solyc06g036170.1.1	Tomato	nucleus	29.36	26.76
Solyc03g025170.1.1	Tomato	nucleus	29.72	25.67
Solyc01g100200.2.1	Tomato	nucleus	25.5	20.87
Solyc06g082530.1.1	Tomato	cytosol	24.59	20.52
Solyc05g053090.1.1	Tomato	cytosol	27.52	20.19
Solyc06g076280.1.1	Tomato	cytosol	27.34	19.92
Solyc09g010920.1.1	Tomato	cytosol	27.71	19.84
Solyc10g086530.1.1	Tomato	cytosol	27.16	19.45

Protein Annotations

MapMan:15.5.12	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0004871
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628
GO:GO:0009640	GO:GO:0009791	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202	UniProt:K4CEZ9
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF57	EnsemblPlantsGene:Solyc07g047950.1	EnsemblPlants:Solyc07g047950.1.1
InterPro:TF_GRAS	UniParc:UPI000276AE51	:	:	:	:

Description

No Description!

Coordinates

chr7:+:59174275..59175912

Molecular Weight (calculated)

60780.4 Da

IEP (calculated)

6.455

GRAVY (calculated)

-0.254

Length

545 amino acids

Sequence
(BLAST)

001: MQASRRRRTT MSNMLYCEPV QKAEAYYLPQ FQTLESHLSC INGSLGGNHS FQTYHDRYCM LEASSATGSN AVYHSPSTAS FSSNGSTTCN QESQLYLSDV
101: RQSPETTNYG SPISGSCITD DVTDFMHKLK ELETAMLGPD ADFQESYDNS LASSIASSEI DSWRQMMLAI PRRDLKQVLI ACAKAVSDGE LVTAQVLISE
201: LRQMVSVSGE PIQRLGAYIL EGLVARLGAS GSSICKSLRC KEPASFELLS YMHVLYEICP YFKFGYMSAN GAIAEAMKDE NRVHIIDFQI AQGSQWVPMI
301: QAFAARPGGP PHIRITGIDD STSAYARGGG LDIVGQRLSK LAKTFKVPFE FHPAAMSGSD IQLKNLGIQP GEALAVNFAF TLHHMPDESV STENHRDRLL
401: RMVKNLNPKV VTLVEQESNT NTAAFFPRFL ETLDYYSAMF ESIDMTLPRG HKERINVEQH CLARDVVNII ACEGIERVER HELLGKWKSR FRMAGFNPYP
501: LSSLVNATIK TLLESYSDKY RLEERDGALY LGWMNRDLVA SCAWK

Best Arabidopsis Sequence Match ( AT5G48150.3 )
(BLAST)

001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK

Arabidopsis Description

PAT1Scarecrow-like transcription factor PAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.