Factsheet for Solyc04g064550.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063944	Potato	cytosol, mitochondrion	96.27	96.96
GSMUA_Achr6P11780_001	Banana	cytosol	43.87	72.22
Bra017915.1-P	Field mustard	cytoskeleton, cytosol, nucleus, plastid	49.56	68.38
VIT_18s0001g15270.t01	Wine grape	cytosol, plastid	62.7	62.48
KRH18097	Soybean	cytosol	61.1	58.21
KRH15917	Soybean	cytosol	60.75	57.87
CDY61060	Canola	cytosol	54.71	57.14
CDY00377	Canola	cytosol	55.59	56.91
GSMUA_Achr10P...	Banana	cytosol	55.59	56.7
Bra012280.1-P	Field mustard	cytosol	55.06	56.47
CDY68224	Canola	cytosol	57.73	56.42
KRH53364	Soybean	cytosol	59.5	55.83
CDY50240	Canola	cytosol	57.02	55.73
KRH64568	Soybean	cytosol	58.26	55.03
AT1G21450.1	Thale cress	nucleus	57.9	54.97
GSMUA_Achr3P02410_001	Banana	nucleus	55.59	53.32
Os01t0881500-01	Rice	cytosol	52.04	52.98
HORVU3Hr1G091250.1	Barley	cytosol	51.15	52.17
TraesCS3D01G403100.1	Wheat	cytosol	51.15	52.17
TraesCS3B01G441600.1	Wheat	cytosol	51.15	52.17
TraesCS3A01G408000.1	Wheat	cytosol	50.98	51.99
KXG33821	Sorghum	cytosol	50.98	50.44
EES18257	Sorghum	cytosol	49.2	49.2
Zm00001d038225_P001	Maize	cytosol	47.6	47.77
Solyc06g035620.2.1	Tomato	cytosol	27.35	47.24
Solyc07g047950.1.1	Tomato	mitochondrion	40.32	41.65
Solyc07g065270.1.1	Tomato	nucleus	37.3	39.03
Solyc11g012510.1.1	Tomato	mitochondrion	37.12	38.56
Solyc04g014830.1.1	Tomato	mitochondrion	36.06	36.71
Solyc12g005340.1.1	Tomato	cytosol	36.23	36.56
Solyc07g063940.1.1	Tomato	cytosol, nucleus, peroxisome	36.94	35.68
Solyc06g036170.1.1	Tomato	nucleus	32.33	30.43
Solyc03g025170.1.1	Tomato	nucleus	34.1	30.43
Solyc04g011630.1.1	Tomato	cytosol	9.06	30.0
Solyc05g054170.2.1	Tomato	mitochondrion, nucleus	15.63	26.43
Solyc06g082530.1.1	Tomato	cytosol	20.25	17.46
Solyc01g100200.2.1	Tomato	nucleus	20.6	17.42
Solyc05g053090.1.1	Tomato	cytosol	22.91	17.36
Solyc06g076280.1.1	Tomato	cytosol	22.74	17.11
Solyc09g010920.1.1	Tomato	cytosol	22.02	16.29
Solyc10g086530.1.1	Tomato	cytosol	20.96	15.51

Protein Annotations

MapMan:15.5.12	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR005202	UniProt:K4BT46	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF10	InterPro:Scarecrow-like_1	EnsemblPlantsGene:Solyc04g064550.1	EnsemblPlants:Solyc04g064550.1.1	InterPro:TF_GRAS	UniParc:UPI000276644F
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:55726990..55728681

Molecular Weight (calculated)

63078.2 Da

IEP (calculated)

4.872

GRAVY (calculated)

-0.412

Length

563 amino acids

Sequence
(BLAST)

001: MSLVRSLRSI GNGKLYFQNG HNDNSSLATS MYTKNARGIM YATESSSTDS YDPKYLLESP SPSEELLNTS PTDVLGNPFH QRHSSSFHPS RDYNQVSYDS
101: ADCVNQSPDS SEYNDGRVTM KLQELERVLF DDNEIEGDDV FARGETVDID DEWFNQIRTE LLQESPKEST SADSNTSSSS SYKEISVSAP QTPKQMLFSC
201: AAAIQDGHIE QASSMINELR QMVSIQGDPL GRTAAYMVEA LAARMATSGR GLYKALKCKE ATSSERLSAM QVLFEVCPYF RFGFMAANGA ILEAFKDEKR
301: VHIIDFDVNQ GSQYYTLLQT LGSMPGKPPH VRLTGVDDPE SVQRAIGGLN VIGLRLAQLA KDLKISFEFQ AVSSNTALVT PAMLNCRPGE AVLVNFAFQL
401: HHMPDESVST VNQRDQLLRM VKSLNPKLVT VVEQDMNTNT APFLQRFAEV YNYYCAVFES LDATLSRDSQ ERVNVERQCL ARDIINIVAC EGLERIERYE
501: VAGKWRARMM MAGFTPSPIS RNVYESIRNL IKQYSERYKA EEEAGALYFG WEDKTLTVAS AWR

Best Arabidopsis Sequence Match ( AT1G21450.1 )
(BLAST)

001: MVEQTVVREH IKARVMSLVR SAEPSSYRNP KLYTLNENGN NNGVSSAQIF DPDRSKNPCL TDDSYPSQSY EKYFLDSPTD EFVQHPIGSG ASVSSFGSLD
101: SFPYQSRPVL GCSMEFQLPL DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIQE LERALLGDED DKMVGIDNLM EIDSEWSYQN ESEQHQDSPK
201: ESSSADSNSH VSSKEVVSQA TPKQILISCA RALSEGKLEE ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ
301: VLFEVCPCFK FGFLAANGAI LEAIKGEEEV HIIDFDINQG NQYMTLIRSI AELPGKRPRL RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA
401: MPSKTSIVSP STLGCKPGET LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY EYYSAVFESL DMTLPRESQE
501: RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM AGFNPKPMSA KVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR

Arabidopsis Description

SCL1Scarecrow-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.