Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G403100.1 | Wheat | cytosol | 99.09 | 99.09 |
| TraesCS3A01G408000.1 | Wheat | cytosol | 98.37 | 98.37 |
| HORVU3Hr1G091250.1 | Barley | cytosol | 97.64 | 97.64 |
| Os01t0881500-01 | Rice | cytosol | 87.32 | 87.16 |
| KXG33821 | Sorghum | cytosol | 86.96 | 84.36 |
| GSMUA_Achr6P11780_001 | Banana | cytosol | 44.57 | 71.93 |
| Zm00001d038225_P001 | Maize | cytosol | 70.47 | 69.34 |
| Bra017915.1-P | Field mustard | cytoskeleton, cytosol, nucleus, plastid | 45.65 | 61.76 |
| GSMUA_Achr10P... | Banana | cytosol | 60.87 | 60.87 |
| GSMUA_Achr3P02410_001 | Banana | nucleus | 59.24 | 55.71 |
| VIT_04s0044g01370.t01 | Wine grape | nucleus | 57.25 | 55.63 |
| VIT_18s0001g15270.t01 | Wine grape | cytosol, plastid | 56.34 | 55.04 |
| KRH64568 | Soybean | cytosol | 56.52 | 52.35 |
| KRH18097 | Soybean | cytosol | 55.25 | 51.61 |
| KRH53364 | Soybean | cytosol | 55.98 | 51.5 |
| Solyc04g064550.1.1 | Tomato | mitochondrion | 52.17 | 51.15 |
| PGSC0003DMT400063944 | Potato | cytosol, mitochondrion | 51.63 | 50.98 |
| CDY61060 | Canola | cytosol | 49.46 | 50.65 |
| KRH15917 | Soybean | cytosol | 54.17 | 50.59 |
| CDY00377 | Canola | cytosol | 50.36 | 50.55 |
| CDY50240 | Canola | cytosol | 52.72 | 50.52 |
| CDY68224 | Canola | cytosol | 52.17 | 50.0 |
| Bra012280.1-P | Field mustard | cytosol | 49.46 | 49.73 |
| AT1G21450.1 | Thale cress | nucleus | 51.81 | 48.23 |
| TraesCS2B01G217500.1 | Wheat | cytosol | 38.41 | 38.27 |
| TraesCS4B01G266700.1 | Wheat | cytosol | 36.96 | 37.99 |
| TraesCS2B01G239400.1 | Wheat | cytosol | 37.68 | 36.49 |
| TraesCS1B01G037500.1 | Wheat | cytosol | 19.93 | 26.63 |
| TraesCS2B01G413500.1 | Wheat | cytosol | 30.43 | 26.62 |
| TraesCS4B01G141200.1 | Wheat | cytosol | 23.55 | 22.93 |
| TraesCS4B01G140800.1 | Wheat | cytosol | 22.46 | 20.98 |
| TraesCS4B01G336200.1 | Wheat | cytosol | 21.38 | 20.21 |
| TraesCS4B01G141400.1 | Wheat | cytosol | 23.91 | 19.97 |
| TraesCS4B01G141100.1 | Wheat | cytosol | 22.64 | 19.87 |
| TraesCS7B01G077800.1 | Wheat | cytosol | 25.72 | 19.32 |
| TraesCS7B01G078300.1 | Wheat | cytosol | 25.54 | 19.11 |
| TraesCS4B01G141300.1 | Wheat | cytosol | 22.46 | 18.4 |
| TraesCS3B01G081100.1 | Wheat | nucleus | 23.19 | 17.9 |
| TraesCS5B01G494500.1 | Wheat | cytosol | 20.83 | 17.5 |
| TraesCS3B01G081000.1 | Wheat | cytosol | 22.64 | 17.17 |
| TraesCS1B01G037300.1 | Wheat | cytosol | 21.74 | 17.05 |
| TraesCS3B01G080900.1 | Wheat | nucleus | 21.92 | 16.78 |
| TraesCS1B01G037400.1 | Wheat | cytosol | 21.92 | 16.74 |
| TraesCS5B01G138100.1 | Wheat | cytosol, plastid | 23.01 | 16.37 |
| TraesCS4B01G141500.1 | Wheat | peroxisome | 23.01 | 15.74 |
| TraesCS1B01G037200.1 | Wheat | nucleus | 20.83 | 15.19 |
| TraesCS3B01G392600.1 | Wheat | cytosol | 21.2 | 14.36 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G441600.1 | EnsemblPlantsGene:TraesCS3B01G441600 | InterPro:IPR005202 | InterPro:Scarecrow-like_1 | InterPro:TF_GRAS | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF10 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | : |
Description
No Description!
Coordinates
chr3B:+:681098302..681100331
Molecular Weight (calculated)
61382.2 Da
IEP (calculated)
4.481
GRAVY (calculated)
-0.305
Length
552 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFVGRVDPS TTYADNIYVH KFGAPNSNFA ARRFGSDTQL FRYGPEPFNS EDYGHMGFPE APSAAFQNSF YNQQASLTPC SDATKDSPVC SNVSQQNSQS
101: LSDNQSSGLE VEFDDEIRLK LQELEHALLD DGDDILFEIS QAGCISDEWA DPMKDVLLAT SPKESESSIS CAGSNSGEAR TPKQLLFDCA TALAEYNVDE
201: AQAIITDLRQ MVSIQGDPSH RIAAYLVEGL AARIVASGTG IYKALTCKDP PTLYQLSAMQ ILFEICPCYR FGFMAANYAI LEACKGEERM HIIDFDINQG
301: SQYITLMQSM KDDANKPRHL RITGVDDHET VQRTVGGLKV IGQRLEKLAE DCGISFEFRA VGADIGDVTP AMLDCRPGEA LVVNFAFQLH HLPDESVSIM
401: NERDQLLRMV KGLQPKLVTL VEQDANTNTA PFQTRFREVY DYYSALFDSL DATLPRESPD RMNVERQCLA REIVNILACE GPDRVERYEV AGKWRARMTM
501: AGFAPCPFSS NVIGEIRSLL SSYCDRYKFE EDHGGLHFGW GEKTLIVASA WQ
101: LSDNQSSGLE VEFDDEIRLK LQELEHALLD DGDDILFEIS QAGCISDEWA DPMKDVLLAT SPKESESSIS CAGSNSGEAR TPKQLLFDCA TALAEYNVDE
201: AQAIITDLRQ MVSIQGDPSH RIAAYLVEGL AARIVASGTG IYKALTCKDP PTLYQLSAMQ ILFEICPCYR FGFMAANYAI LEACKGEERM HIIDFDINQG
301: SQYITLMQSM KDDANKPRHL RITGVDDHET VQRTVGGLKV IGQRLEKLAE DCGISFEFRA VGADIGDVTP AMLDCRPGEA LVVNFAFQLH HLPDESVSIM
401: NERDQLLRMV KGLQPKLVTL VEQDANTNTA PFQTRFREVY DYYSALFDSL DATLPRESPD RMNVERQCLA REIVNILACE GPDRVERYEV AGKWRARMTM
501: AGFAPCPFSS NVIGEIRSLL SSYCDRYKFE EDHGGLHFGW GEKTLIVASA WQ
001: MVEQTVVREH IKARVMSLVR SAEPSSYRNP KLYTLNENGN NNGVSSAQIF DPDRSKNPCL TDDSYPSQSY EKYFLDSPTD EFVQHPIGSG ASVSSFGSLD
101: SFPYQSRPVL GCSMEFQLPL DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIQE LERALLGDED DKMVGIDNLM EIDSEWSYQN ESEQHQDSPK
201: ESSSADSNSH VSSKEVVSQA TPKQILISCA RALSEGKLEE ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ
301: VLFEVCPCFK FGFLAANGAI LEAIKGEEEV HIIDFDINQG NQYMTLIRSI AELPGKRPRL RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA
401: MPSKTSIVSP STLGCKPGET LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY EYYSAVFESL DMTLPRESQE
501: RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM AGFNPKPMSA KVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR
101: SFPYQSRPVL GCSMEFQLPL DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIQE LERALLGDED DKMVGIDNLM EIDSEWSYQN ESEQHQDSPK
201: ESSSADSNSH VSSKEVVSQA TPKQILISCA RALSEGKLEE ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ
301: VLFEVCPCFK FGFLAANGAI LEAIKGEEEV HIIDFDINQG NQYMTLIRSI AELPGKRPRL RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA
401: MPSKTSIVSP STLGCKPGET LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY EYYSAVFESL DMTLPRESQE
501: RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM AGFNPKPMSA KVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR
Arabidopsis Description
SCL1Scarecrow-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.