Factsheet for GSMUA_Achr3P02410_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P11780_001	Banana	cytosol	50.09	85.96
GSMUA_Achr10P...	Banana	cytosol	77.68	82.61
Bra017915.1-P	Field mustard	cytoskeleton, cytosol, nucleus, plastid	45.66	65.69
VIT_04s0044g01370.t01	Wine grape	nucleus	61.5	63.56
VIT_18s0001g15270.t01	Wine grape	cytosol, plastid	57.75	60.0
Os01t0881500-01	Rice	cytosol	56.22	59.67
TraesCS3D01G403100.1	Wheat	cytosol	55.71	59.24
TraesCS3B01G441600.1	Wheat	cytosol	55.71	59.24
TraesCS3A01G408000.1	Wheat	cytosol	55.71	59.24
HORVU3Hr1G091250.1	Barley	cytosol	55.37	58.88
KRH64568	Soybean	cytosol	59.11	58.22
KXG33821	Sorghum	cytosol	56.22	58.0
KRH53364	Soybean	cytosol	58.94	57.67
KRH18097	Soybean	cytosol	57.58	57.19
EES18257	Sorghum	cytosol	54.68	57.02
GSMUA_Achr8P03610_001	Banana	cytosol	13.97	56.94
KRH15917	Soybean	cytosol	56.39	56.01
PGSC0003DMT400063944	Potato	cytosol, mitochondrion	52.98	55.64
Solyc04g064550.1.1	Tomato	mitochondrion	53.32	55.59
CDY61060	Canola	cytosol	50.77	55.29
CDY00377	Canola	cytosol	51.45	54.91
Bra012280.1-P	Field mustard	cytosol	51.11	54.64
Zm00001d038225_P001	Maize	cytosol	51.96	54.37
CDY68224	Canola	cytosol	52.64	53.65
CDY50240	Canola	cytosol	52.3	53.3
AT1G21450.1	Thale cress	nucleus	52.13	51.6
GSMUA_Achr4P07010_001	Banana	cytosol	28.11	50.3
GSMUA_Achr4P11050_001	Banana	nucleus	28.45	42.07
GSMUA_AchrUn_...	Banana	nucleus	29.64	40.65
GSMUA_Achr6P24310_001	Banana	cytosol	35.6	39.07
GSMUA_Achr9P12070_001	Banana	mitochondrion, plastid	29.47	33.27
GSMUA_Achr5P12810_001	Banana	cytosol, plastid	30.83	32.21
GSMUA_AchrUn_...	Banana	plastid	31.35	31.45
GSMUA_Achr4P26400_001	Banana	cytosol, mitochondrion, plastid	31.18	31.34
GSMUA_Achr9P18770_001	Banana	cytosol	29.98	30.93
GSMUA_Achr1P03650_001	Banana	mitochondrion	29.47	30.35
GSMUA_Achr9P24710_001	Banana	endoplasmic reticulum, plastid	28.79	28.99
GSMUA_Achr4P24960_001	Banana	cytosol	23.0	27.84
GSMUA_Achr5P08320_001	Banana	cytosol	16.35	21.38
GSMUA_Achr10P...	Banana	nucleus	15.33	20.36
GSMUA_Achr7P15080_001	Banana	cytosol	19.93	19.57
GSMUA_Achr10P...	Banana	cytosol	19.42	19.03
GSMUA_Achr6P34090_001	Banana	nucleus	18.91	18.14
GSMUA_Achr8P02550_001	Banana	nucleus	11.93	17.86
GSMUA_AchrUn_...	Banana	cytosol	15.84	14.11

Protein Annotations

EnsemblPlants:GSMUA_Achr3P02410_001	EnsemblPlants:GSMUA_Achr3T02410_001	EnsemblPlantsGene:GSMUA_Achr3G02410_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:Scarecrow-like_1
InterPro:TF_GRAS	ncoils:Coil	PANTHER:PTHR31636	PANTHER:PTHR31636:SF10	PFAM:PF03514	PFscan:PS50985
SEG:seg	UniParc:UPI00029657A5	UniProt:M0SB59	MapMan:15.5.12	:	:

Description

Scarecrow-like protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G02410_001]

Coordinates

chr3:-:1586158..1588414

Molecular Weight (calculated)

65038.8 Da

IEP (calculated)

4.686

GRAVY (calculated)

-0.317

Length

587 amino acids

Sequence
(BLAST)

001: MSMIRSVDSS TANGDSNLHA NKSGGENSGL PRQILSGADK RMYDHRPASY KSDLHPQQHF IDSSSEMIHV NPLDMSISSI PEHYSQVSSA PYQLIANFHS
101: SILSENPYSS CIAAVQCPDS SAGSNVSHQA SHSLSDYPSP EQEIDYGKDE IRLKLQELEQ ALLNDNDEDL VDSDQVVGIE DNWTEPIKDL LVPCSPKESS
201: SDLSISCIGS NREPPTPKQL LFDCAAAISV GCMEEAQAII TELRQIVSIQ GDPPQRLAAY MVEGLAARIA SSGQGIYKAL RCKEPPTSDR LSAMQILFEV
301: CPCFKFGYMA ANYTIVEALG DEEKVHIIDF DINQGSQYIN LIQTLSTWPS KRPHLRISGV DDPESVQRAV GGLEIIGQRL EKLAEELGVP FEFQAIAAKT
401: SDVTPEMLDC RSGEALVVNF AFQLHHMPDE SVSTVNQRDQ MLRMVKGLRP KLVTLIEQDM NTNTAPFFPR FVEVYNYHTA VFESLDATLP RDSTDRMNVE
501: RQCLARDIVN IVACEGADRI ERYEVAGKWR ARMTMAGFKP CPFSTSVNGS IGALLKSYCD RYKAKEENGA LYFGWEDKVL IVASAWK

Best Arabidopsis Sequence Match ( AT1G21450.1 )
(BLAST)

001: MVEQTVVREH IKARVMSLVR SAEPSSYRNP KLYTLNENGN NNGVSSAQIF DPDRSKNPCL TDDSYPSQSY EKYFLDSPTD EFVQHPIGSG ASVSSFGSLD
101: SFPYQSRPVL GCSMEFQLPL DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIQE LERALLGDED DKMVGIDNLM EIDSEWSYQN ESEQHQDSPK
201: ESSSADSNSH VSSKEVVSQA TPKQILISCA RALSEGKLEE ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ
301: VLFEVCPCFK FGFLAANGAI LEAIKGEEEV HIIDFDINQG NQYMTLIRSI AELPGKRPRL RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA
401: MPSKTSIVSP STLGCKPGET LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY EYYSAVFESL DMTLPRESQE
501: RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM AGFNPKPMSA KVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR

Arabidopsis Description

SCL1Scarecrow-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.