Factsheet for GSMUA_Achr4P26400_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid, mitochondrion

Predictor Summary:

plastid 2
cytosol 1
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	plastid	76.88	76.75
GSMUA_Achr5P12810_001	Banana	cytosol, plastid	71.06	73.84
GSMUA_Achr1P03650_001	Banana	mitochondrion	61.47	62.98
GSMUA_Achr9P18770_001	Banana	cytosol	59.42	60.98
GSMUA_Achr4P24960_001	Banana	cytosol	48.8	58.76
Os04t0580300-01	Rice	cytosol, nucleus, plastid	50.17	47.33
Os02t0681900-01	Rice	cytosol	49.49	46.76
Zm00001d002573_P001	Maize	cytosol	49.83	46.71
CDY27821	Canola	cytosol	35.45	46.62
EES05727	Sorghum	cytosol	50.17	46.58
TraesCS2D01G393200.1	Wheat	cytosol	49.49	46.09
TraesCS2B01G413500.1	Wheat	cytosol	49.49	45.8
TraesCS2A01G395400.1	Wheat	cytosol, mitochondrion, nucleus	49.49	45.8
Zm00001d051461_P001	Maize	cytosol	47.6	45.8
CDY00533	Canola	cytosol	34.93	45.74
Zm00001d026050_P001	Maize	mitochondrion, nucleus, plastid	48.63	45.59
Bra028312.1-P	Field mustard	cytosol	35.1	45.15
GSMUA_Achr8P03610_001	Banana	cytosol	10.96	44.44
EES12703	Sorghum	cytosol, nucleus, plastid	48.8	43.71
HORVU2Hr1G094040.2	Barley	cytosol, plastid	28.6	43.38
GSMUA_Achr6P11780_001	Banana	cytosol	25.34	43.27
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	42.29	41.94
Solyc06g036170.1.1	Tomato	nucleus	40.58	39.63
PGSC0003DMT400076932	Potato	nucleus	40.58	39.11
CDY27063	Canola	cytosol, plastid	38.36	38.89
Solyc03g025170.1.1	Tomato	nucleus	41.78	38.67
Bra022596.1-P	Field mustard	plastid	38.01	38.34
KRG91573	Soybean	plastid	38.87	38.22
CDX91655	Canola	cytosol	38.18	37.93
PGSC0003DMT400026240	Potato	nucleus, plastid	41.27	36.85
AT5G52510.1	Thale cress	nucleus	40.07	36.56
KRH35251	Soybean	plastid	36.64	36.27
KRH38397	Soybean	plastid	32.88	35.56
GSMUA_Achr4P07010_001	Banana	cytosol	19.18	34.15
KRH08880	Soybean	plastid	38.36	34.09
GSMUA_Achr10P...	Banana	cytosol	31.16	32.97
GSMUA_Achr3P02410_001	Banana	nucleus	31.34	31.18
GSMUA_Achr4P11050_001	Banana	nucleus	19.52	28.72
GSMUA_Achr6P24310_001	Banana	cytosol	24.83	27.1
GSMUA_AchrUn_...	Banana	nucleus	19.52	26.64
GSMUA_Achr9P12070_001	Banana	mitochondrion, plastid	20.21	22.69
GSMUA_Achr9P24710_001	Banana	endoplasmic reticulum, plastid	20.55	20.58
GSMUA_Achr5P08320_001	Banana	cytosol	14.9	19.38
GSMUA_Achr10P...	Banana	nucleus	13.18	17.42
GSMUA_Achr8P02550_001	Banana	nucleus	11.47	17.09
GSMUA_Achr10P...	Banana	cytosol	17.29	16.86
GSMUA_Achr6P34090_001	Banana	nucleus	17.47	16.67
GSMUA_Achr7P15080_001	Banana	cytosol	16.27	15.89
GSMUA_AchrUn_...	Banana	cytosol	15.75	13.96

Protein Annotations

MapMan:15.5.12	ncoils:Coil	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G26400_001	EnsemblPlants:GSMUA_Achr4P26400_001	EnsemblPlants:GSMUA_Achr4T26400_001
InterPro:IPR005202	UniProt:M0SSA2	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF4
InterPro:TF_GRAS	UniParc:UPI000295E863	SEG:seg	:	:	:

Description

Putative Scarecrow-like protein 8 [Source:GMGC_GENE;Acc:GSMUA_Achr4G26400_001]

Coordinates

chr4:-:25724009..25725902

Molecular Weight (calculated)

62104.9 Da

IEP (calculated)

8.827

GRAVY (calculated)

-0.159

Length

584 amino acids

Sequence
(BLAST)

001: MASGFPGREL GYGVRLPIPA RSEAGNGGLL KRSLTEMDRL QLQQQMQLQH TFFLRSVKQR TLFNSPASPH FSPPLPPADL SSGSSSSLIS AKLTQDGLAR
101: SREQSSAPQV AASGAESRPS AAVRDRLQEL ERRLLLDEEE GEGDVSTSGS AVTTAEWSEA MQQLITPPTS AKNPLSASPT NSSSTTVSSS ASCSPSSSSV
201: ASSSRQMLLE TAAAIADGNL ETATANLVVL KRVANPRGDA EQRLTAVMVD ALISRLKLPQ AGSSSLPIAA LCSAEHFAAT QMLYELSPCF KLGLITANLA
301: ILEATKEQPM IHILDFDVGQ GGQYAVLLHA LAERHHLRPA AGAPSLRITA VSDPTSPFTN NNSGGNLRAV GNRLEKLAER AGLAVRFNVV HLRAAELDAS
401: ALRCEPGEAL VVNLAFALSR VPDESVSPTN PRDEILRRVR ALRPRVVALV EQEINTSTAA FAARFGEACA HYGALLESLD ATVARDSVQR ARVEAGLARR
501: ALNSVANEGA DRVERCEVFG KWRARMGMAG FDSVPLGPAV IEPVKARLAS IRSNRGFTMR DEAGGHGLGF GWKGRVLTVA SSWR

Best Arabidopsis Sequence Match ( AT5G52510.1 )
(BLAST)

001: MESGFSGGGG GSDFYGGGGG RSIPGGPGTV INVGNNNPQT TYRNQIPGIF FDQIGNRVAG GNGFSGKRTL ADFQAAQQHQ QQQQQQPFYS QAALNAFLSR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR

Arabidopsis Description

SCL8Scarecrow-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.