Factsheet for GSMUA_Achr6P24310_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P03610_001	Banana	cytosol	22.43	83.33
EER97346	Sorghum	cytosol	69.91	65.61
HORVU2Hr1G043780.1	Barley	cytosol	68.6	64.39
TraesCS2B01G239400.1	Wheat	cytosol	68.22	64.04
Os07t0545800-01	Rice	cytosol, nucleus	68.22	63.92
TraesCS2D01G220200.1	Wheat	cytosol	67.85	63.68
TraesCS2A01G214400.1	Wheat	cytosol	67.66	63.51
Solyc06g035620.2.1	Tomato	cytosol	38.13	62.58
Zm00001d006551_P001	Maize	golgi, mitochondrion	68.78	59.64
VIT_19s0014g04940.t01	Wine grape	cytosol	63.93	58.66
KRH27129	Soybean	plastid	59.81	57.04
KRH55599	Soybean	plastid	60.37	56.87
KRH22210	Soybean	cytosol, plastid	61.31	56.85
Solyc12g005340.1.1	Tomato	cytosol	58.88	56.45
PGSC0003DMT400056120	Potato	cytosol	58.69	56.17
KRH25905	Soybean	cytosol, plastid	59.44	55.99
GSMUA_Achr9P12070_001	Banana	mitochondrion, plastid	53.83	55.38
GSMUA_Achr4P07010_001	Banana	cytosol	33.83	55.18
Solyc07g063940.1.1	Tomato	cytosol, nucleus, peroxisome	59.63	54.72
PGSC0003DMT400049492	Potato	cytosol	59.07	54.3
GSMUA_Achr6P11780_001	Banana	cytosol	32.71	51.17
GSMUA_Achr9P24710_001	Banana	endoplasmic reticulum, plastid	53.08	48.71
GSMUA_Achr4P11050_001	Banana	nucleus	34.95	47.1
GSMUA_AchrUn_...	Banana	nucleus	37.57	46.96
GSMUA_Achr10P...	Banana	cytosol	38.13	36.96
GSMUA_Achr3P02410_001	Banana	nucleus	39.07	35.6
GSMUA_Achr9P18770_001	Banana	cytosol	27.1	25.48
GSMUA_Achr5P12810_001	Banana	cytosol, plastid	26.73	25.44
GSMUA_Achr4P26400_001	Banana	cytosol, mitochondrion, plastid	27.1	24.83
GSMUA_AchrUn_...	Banana	plastid	26.92	24.62
GSMUA_Achr1P03650_001	Banana	mitochondrion	25.61	24.04
GSMUA_Achr4P24960_001	Banana	cytosol	20.19	22.27
GSMUA_Achr5P08320_001	Banana	cytosol	18.13	21.6
GSMUA_Achr10P...	Banana	nucleus	15.7	19.0
GSMUA_Achr7P15080_001	Banana	cytosol	20.56	18.39
GSMUA_Achr8P02550_001	Banana	nucleus	13.27	18.11
GSMUA_Achr10P...	Banana	cytosol	19.81	17.7
GSMUA_Achr6P34090_001	Banana	nucleus	20.0	17.48
GSMUA_AchrUn_...	Banana	cytosol	17.38	14.11

Protein Annotations

EnsemblPlants:GSMUA_Achr6P24310_001	EnsemblPlants:GSMUA_Achr6T24310_001	EnsemblPlantsGene:GSMUA_Achr6G24310_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF18	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI000294C015
UniProt:M0T9S7	MapMan:15.5.12	:	:	:	:

Description

Chitin-inducible gibberellin-responsive protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G24310_001]

Coordinates

chr6:-:24851221..24856281

Molecular Weight (calculated)

59675.4 Da

IEP (calculated)

6.513

GRAVY (calculated)

-0.369

Length

535 amino acids

Sequence
(BLAST)

001: MDSHQLYGLT GANLSCEHPS PRNLVLIEWT LDSTKSALGN SPSSPLSSQF ECDNLSVPSN IQDQHSSTDT IPGVSLSGYS PLDTDSRFKP SQVHLPEGIQ
101: IQSNSLSAAS SQSMKHALQE IETALMAPDT DEPTTSTDPE NLNPSHEVRP EKRLREMRKP SGNDVKQLLI KCAETLSKNK IKEFELLVEK ARSVVSITGV
201: PIQRLGAYML EGLVARHKSS GTNIHRALRC REPESKELLS YMRILYDICP YFKFGYMAAN GAIADALKKE DRIHIIDFQI AQGTRWVTLI QALAARPGGP
301: PHVRITGIDD PVAEYTRGDG LHVVGKMLLD MSKKFNIPLE FKGLPVCEPE VTKEMLDVRL GEALAVNFTL QLHHTPDESD DVNNPGDGLL RLVKSLSPKV
401: MTLVEQESNT NTTPFSSRFV ETLDYYSAMF ESVDVMLPKE SKDRINVEQH CLAKDIVNII ACEGKDRIER HELLSKWRSR LSMAGFRPYP LSPYVNSVIK
501: TLLGYYSDKY TLMEKDGALL LGWKNRNLVS ASAWH

Best Arabidopsis Sequence Match ( AT5G48150.3 )
(BLAST)

001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK

Arabidopsis Description

PAT1Scarecrow-like transcription factor PAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.