Factsheet for HORVU2Hr1G043780.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G239400.1	Wheat	cytosol	95.79	95.79
TraesCS2D01G220200.1	Wheat	cytosol	95.44	95.44
TraesCS2A01G214400.1	Wheat	cytosol	95.44	95.44
Os07t0545800-01	Rice	cytosol, nucleus	89.47	89.32
EER97346	Sorghum	cytosol	87.54	87.54
GSMUA_Achr8P03610_001	Banana	cytosol	22.11	87.5
Zm00001d006551_P001	Maize	golgi, mitochondrion	84.39	77.96
GSMUA_Achr6P24310_001	Banana	cytosol	64.39	68.6
Solyc06g035620.2.1	Tomato	cytosol	37.89	66.26
VIT_19s0014g04940.t01	Wine grape	cytosol	60.0	58.66
KRH22210	Soybean	cytosol, plastid	58.77	58.06
KRH27129	Soybean	plastid	57.02	57.93
KRH55599	Soybean	plastid	57.37	57.57
KRH25905	Soybean	cytosol, plastid	55.79	55.99
GSMUA_Achr9P12070_001	Banana	mitochondrion, plastid	50.88	55.77
Solyc12g005340.1.1	Tomato	cytosol	54.21	55.38
PGSC0003DMT400056120	Potato	cytosol	53.51	54.56
Solyc07g063940.1.1	Tomato	cytosol, nucleus, peroxisome	55.79	54.55
PGSC0003DMT400049492	Potato	cytosol	55.61	54.47
GSMUA_Achr9P24710_001	Banana	endoplasmic reticulum, plastid	48.25	47.17
HORVU4Hr1G071670.1	Barley	cytosol	41.93	44.59
HORVU2Hr1G036280.1	Barley	cytosol	43.51	44.52
HORVU5Hr1G099160.1	Barley	plastid	42.81	38.73
HORVU3Hr1G091250.1	Barley	cytosol	36.67	37.86
HORVU3Hr1G012520.1	Barley	cytosol	21.05	26.32
HORVU3Hr1G012550.6	Barley	cytosol	21.4	20.47
HORVU4Hr1G080460.5	Barley	cytosol	20.88	20.45
HORVU4Hr1G027900.1	Barley	cytosol	22.98	19.79
HORVU2Hr1G094040.2	Barley	cytosol, plastid	13.33	19.74
HORVU4Hr1G027610.1	Barley	cytosol	22.98	19.35
HORVU4Hr1G027480.1	Barley	endoplasmic reticulum, extracellular, plasma membrane	23.86	19.24
HORVU4Hr1G027520.2	Barley	cytosol, peroxisome	21.58	18.84
HORVU5Hr1G113620.1	Barley	cytosol, nucleus, peroxisome	21.23	18.79
HORVU1Hr1G004440.1	Barley	cytosol	23.33	18.5
HORVU5Hr1G020900.1	Barley	cytosol	23.86	18.25
HORVU3Hr1G086210.1	Barley	cytosol, nucleus, plasma membrane	23.33	16.81
HORVU4Hr1G027920.1	Barley	peroxisome	22.46	16.14
HORVU5Hr1G045020.29	Barley	cytosol	21.58	15.63

Protein Annotations

EMBL:AK359701	EMBL:AK364216	EnsemblPlants:HORVU2Hr1G043780.1	EnsemblPlantsGene:HORVU2Hr1G043780	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202
InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF18	PFAM:PF03514	PFscan:PS50985	UniParc:UPI00020057BE
UniProt:F2D739	MapMan:15.5.12	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D739]

Coordinates

chrchr2H:-:225382581..225387077

Molecular Weight (calculated)

64182.4 Da

IEP (calculated)

6.052

GRAVY (calculated)

-0.429

Length

570 amino acids

Sequence
(BLAST)

001: MDLHQLFKYR LTGANVFCEI PTENNLVNSS WQTSPLKLEF SNSPYTPLST QLECDNLSAL SNTPDNQSST ETISAQPISP LEADSSYIKA GGISENIQVR
101: SDPLYATSRH NMQQTLRDIE NVLMAPDADD ATTSANHEFE DTKPSQLMRQ RSRTWSHESR QPLPGVVRPQ FASGGFPTAS YEFRPEKRQR ELREDPQLIV
201: KHLLVKCAEA LSENRTEEFL KLVQEARGTV SINGEPIQRL GAYLLEGLVA RHGNSGTNIY RALKCREPES KELLSYMKIL YNICPYFKFG YMAANGAIAE
301: ALRSEDKIHI IDFQIAQGTQ WITLIQALAA RPGGPPHVRI TGIDDPVSEY ARGEGLELVG NMLKNMSEEF NIPLEFTPLS VYATQVTKEM LEIRPGEAVA
401: VNFTLQLHHT PDESVDVNNP RDGLLRMVKG LSPKVTTLVE QESHTNTTPF LMRFVETMDY YSAMFESIDA NLPRDSKERI SVEQHCLAKD IVNIIACEGK
501: DRVERHELLG KWKSRLSMAG FKPYPLSSYV NSVIKKLLAC YSDKYTLEEK DGAMLLGWKS RKLISASAWH

Best Arabidopsis Sequence Match ( AT1G50600.3 )
(BLAST)

001: MEATQKHMIQ EGSSMFYHQP SSVKQMDLSV QTFDSYCTLE SSSGTKSHPC LNNKNNSSST TSFSSNESPI SQANNNNLSR FNNHSPEENN NSPLSGSSAT
101: NTNETELSLM LKDLETAMME PDVDNSYNNQ GGFGQQHGVV SSAMYRSMEM ISRGDLKGVL YECAKAVENY DLEMTDWLIS QLQQMVSVSG EPVQRLGAYM
201: LEGLVARLAS SGSSIYKALR CKDPTGPELL TYMHILYEAC PYFKFGYESA NGAIAEAVKN ESFVHIIDFQ ISQGGQWVSL IRALGARPGG PPNVRITGID
301: DPRSSFARQG GLELVGQRLG KLAEMCGVPF EFHGAALCCT EVEIEKLGVR NGEALAVNFP LVLHHMPDES VTVENHRDRL LRLVKHLSPN VVTLVEQEAN
401: TNTAPFLPRF VETMNHYLAV FESIDVKLAR DHKERINVEQ HCLAREVVNL IACEGVEREE RHEPLGKWRS RFHMAGFKPY PLSSYVNATI KGLLESYSEK
501: YTLEERDGAL YLGWKNQPLI TSCAWR

Arabidopsis Description

SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.