CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25905	Soybean	cytosol, plastid	92.25	92.25
GSMUA_Achr8P03610_001	Banana	cytosol	20.42	80.56
KRH22210	Soybean	cytosol, plastid	76.58	75.39
KRH27129	Soybean	plastid	72.89	73.8
Solyc06g035620.2.1	Tomato	cytosol	41.55	72.39
VIT_19s0014g04940.t01	Wine grape	cytosol	71.3	69.47
Solyc07g063940.1.1	Tomato	cytosol, nucleus, peroxisome	67.61	65.87
PGSC0003DMT400049492	Potato	cytosol	66.73	65.12
Solyc12g005340.1.1	Tomato	cytosol	63.73	64.87
PGSC0003DMT400056120	Potato	cytosol	63.56	64.58
GSMUA_Achr6P24310_001	Banana	cytosol	56.87	60.37
EER97346	Sorghum	cytosol	58.63	58.42
TraesCS2B01G239400.1	Wheat	cytosol	57.57	57.37
HORVU2Hr1G043780.1	Barley	cytosol	57.57	57.37
Os07t0545800-01	Rice	cytosol, nucleus	57.22	56.92
TraesCS2D01G220200.1	Wheat	cytosol	56.87	56.67
TraesCS2A01G214400.1	Wheat	cytosol	56.69	56.49
Zm00001d006551_P001	Maize	golgi, mitochondrion	57.75	53.16
GSMUA_Achr9P12070_001	Banana	mitochondrion, plastid	45.07	49.23
KRH74015	Soybean	cytosol	46.65	48.98
KRH14104	Soybean	cytosol	46.83	48.81
KRG98562	Soybean	nucleus	43.84	45.69
KRH73868	Soybean	cytosol	43.66	45.5
KRH46306	Soybean	cytosol	43.31	45.14
KRH14274	Soybean	cytosol	42.96	44.77
KRH51175	Soybean	cytosol	41.37	43.36
KRH01979	Soybean	cytosol	41.55	43.3
KRH11548	Soybean	nucleus	42.08	43.3
KRH36572	Soybean	cytosol	41.55	43.07
GSMUA_Achr9P24710_001	Banana	endoplasmic reticulum, plastid	43.31	42.2
KRH18097	Soybean	cytosol	38.91	37.39
KRH15917	Soybean	cytosol	38.38	36.89
KRH64568	Soybean	cytosol	37.68	35.91
KRH53364	Soybean	cytosol	37.85	35.83
KRH38269	Soybean	cytosol	21.13	33.99
KRG91573	Soybean	plastid	26.94	25.76
KRH35251	Soybean	plastid	26.41	25.42
KRH08880	Soybean	plastid	27.11	23.44
KRH38397	Soybean	plastid	21.83	22.96
KRH29773	Soybean	cytosol	24.3	22.48
KRH23089	Soybean	cytosol	25.18	22.2
KRH10243	Soybean	nucleus	25.88	22.11
KRH23090	Soybean	vacuole	23.77	21.74
KRH29774	Soybean	cytosol	23.94	21.55
KRH24775	Soybean	cytosol	25.35	21.18
KRH29775	Soybean	nucleus	25.0	21.1
KRH24780	Soybean	cytosol	24.12	20.76
KRH24778	Soybean	nucleus	23.77	19.97
KRH10240	Soybean	cytosol	21.3	19.97
KRH23094	Soybean	cytosol	19.37	19.89
KRH23091	Soybean	endoplasmic reticulum, plasma membrane	25.35	19.38
KRH29771	Soybean	cytosol	22.54	18.82
KRH24773	Soybean	nucleus	22.54	18.63
KRH23095	Soybean	cytosol	21.48	18.57
KRH10241	Soybean	cytosol, nucleus, peroxisome	22.36	18.46
KRH29779	Soybean	cytosol	23.94	18.33
KRH49113	Soybean	cytosol	23.42	18.12
KRG99969	Soybean	cytosol	23.42	18.05
KRH65839	Soybean	cytosol, plastid	22.89	17.81

Protein Annotations

EntrezGene:100775665	MapMan:15.5.12	EMBL:ACUP02004028	EnsemblPlantsGene:GLYMA_06G265500	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:I1KEE1	InterPro:IPR005202	ProteinID:KRH55598.1
EnsemblPlants:KRH55599	ProteinID:KRH55599	ProteinID:KRH55599.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF18	InterPro:TF_GRAS	UniParc:UPI000233942E	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:45343220..45346790

Molecular Weight (calculated)

63056.5 Da

IEP (calculated)

5.967

GRAVY (calculated)

-0.330

Length

568 amino acids

Sequence
(BLAST)

001: MDLNQFSSFN VISSAGFPCA SSCTPISPIS NRLLGSLKLD IGNSPNSALS THFDSDTVSS ALSDSQEQHN CGEIHSGVNS CNSLQESNHY LHRPVSSVDH
101: LEDGLHLSTR SFFPQDASYD HETRHALLEL ETSLMAPDDE DQVTTSSTSL GDSSRPTASD QRNRSWSHEG QSSDVAYVEK RHKSMEEALL QGFPSSNLKQ
201: LLIVCAKALS ENNMKGFDQL IEKARSAVSI TGEPIQRLGA YLVEGLVARK EASGNNIYHA LRCREPEGKD LLSYMQLLYE ICPYLKFGYM AANGAIAEAC
301: RNEDLIHIID FQIGQGTQWM TLLQALAARP GGAPHVRITG IDDQLSKYVR GDGLEAVGKR LAAISQTFNI PVEFHGVPVL APDVTKDMLD VRPGEALAVN
401: FPLQLHHTAD ESVDMSNPRD GLLRLVKSLS PKVTTLVEQE SNTNTTPFFN RFIETLDYYL AIFESIDVSL PRKSKERVNV EQHCLARDIV NIIACEGKER
501: VERHELLGKW KSRLTMAGFR QYPLSSYVNS VIRSLLRCYS EHYNLVEKDG AMLLGWKDRN LISASAWH

Best Arabidopsis Sequence Match ( AT1G50600.3 )
(BLAST)

001: MEATQKHMIQ EGSSMFYHQP SSVKQMDLSV QTFDSYCTLE SSSGTKSHPC LNNKNNSSST TSFSSNESPI SQANNNNLSR FNNHSPEENN NSPLSGSSAT
101: NTNETELSLM LKDLETAMME PDVDNSYNNQ GGFGQQHGVV SSAMYRSMEM ISRGDLKGVL YECAKAVENY DLEMTDWLIS QLQQMVSVSG EPVQRLGAYM
201: LEGLVARLAS SGSSIYKALR CKDPTGPELL TYMHILYEAC PYFKFGYESA NGAIAEAVKN ESFVHIIDFQ ISQGGQWVSL IRALGARPGG PPNVRITGID
301: DPRSSFARQG GLELVGQRLG KLAEMCGVPF EFHGAALCCT EVEIEKLGVR NGEALAVNFP LVLHHMPDES VTVENHRDRL LRLVKHLSPN VVTLVEQEAN
401: TNTAPFLPRF VETMNHYLAV FESIDVKLAR DHKERINVEQ HCLAREVVNL IACEGVEREE RHEPLGKWRS RFHMAGFKPY PLSSYVNATI KGLLESYSEK
501: YTLEERDGAL YLGWKNQPLI TSCAWR

Arabidopsis Description

SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.