Factsheet for PGSC0003DMT400049492

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g063940.1.1	Tomato	cytosol, nucleus, peroxisome	95.19	95.03
GSMUA_Achr8P03610_001	Banana	cytosol	19.07	77.08
PGSC0003DMT400056120	Potato	cytosol	70.62	73.52
VIT_19s0014g04940.t01	Wine grape	cytosol	70.62	70.5
KRH55599	Soybean	plastid	65.12	66.73
KRH22210	Soybean	cytosol, plastid	65.81	66.38
KRH27129	Soybean	plastid	63.75	66.13
KRH25905	Soybean	cytosol, plastid	63.4	64.96
GSMUA_Achr6P24310_001	Banana	cytosol	54.3	59.07
EER97346	Sorghum	cytosol	54.47	55.61
HORVU2Hr1G043780.1	Barley	cytosol	54.47	55.61
Os07t0545800-01	Rice	cytosol, nucleus	53.78	54.82
TraesCS2D01G220200.1	Wheat	cytosol	53.44	54.56
TraesCS2B01G239400.1	Wheat	cytosol	53.44	54.56
TraesCS2A01G214400.1	Wheat	cytosol	53.09	54.21
Zm00001d006551_P001	Maize	golgi, mitochondrion	54.12	51.05
PGSC0003DMT400015696	Potato	cytosol	45.53	49.53
PGSC0003DMT400057111	Potato	nucleus	44.33	48.04
GSMUA_Achr9P12070_001	Banana	mitochondrion, plastid	40.72	45.58
PGSC0003DMT400034763	Potato	cytosol	41.07	44.76
PGSC0003DMT400060553	Potato	cytosol	39.18	43.51
PGSC0003DMT400021748	Potato	nucleus	39.86	41.5
GSMUA_Achr9P24710_001	Banana	endoplasmic reticulum, plastid	40.21	40.14
PGSC0003DMT400063944	Potato	cytosol, mitochondrion	35.74	37.21
PGSC0003DMT400005480	Potato	cytosol	24.74	29.57
PGSC0003DMT400076932	Potato	nucleus	25.77	24.75
PGSC0003DMT400026240	Potato	nucleus, plastid	27.32	24.31
PGSC0003DMT400063769	Potato	cytosol, nucleus, peroxisome	23.02	20.74
PGSC0003DMT400078286	Potato	nucleus	23.02	20.09
PGSC0003DMT400049420	Potato	cytosol	22.51	19.73
PGSC0003DMT400069949	Potato	cytosol	24.91	19.41
PGSC0003DMT400016258	Potato	cytosol	24.23	19.37
PGSC0003DMT400077972	Potato	cytosol	24.57	19.02
PGSC0003DMT400022997	Potato	cytosol, plastid	23.88	18.27

Protein Annotations

EnsemblPlants:PGSC0003DMT400049492	EnsemblPlantsGene:PGSC0003DMG400019232	EntrezGene:102578160	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
ncoils:Coil	PANTHER:PTHR31636	PANTHER:PTHR31636:SF18	PFAM:PF03514	PFscan:PS50985	PGSC:PGSC0003DMG400019232
RefSeq:XP_006360106.1	UniParc:UPI0002958178	UniProt:M1BNU6	MapMan:15.5.12	:	:

Description

GRAS2 [Source:PGSC_GENE;Acc:PGSC0003DMG400019232]

Coordinates

chr7:-:54095486..54098718

Molecular Weight (calculated)

64829.9 Da

IEP (calculated)

6.639

GRAVY (calculated)

-0.343

Length

582 amino acids

Sequence
(BLAST)

001: MESHHLYGYG GTDVNLPYSY AMTTTPSIPN RLLGTLKFDS GNSPNSPFAN YNDPGTPTTL SDSLEQHSST ENISGTSPCS NSSRDYNLYF CRPSPSADIR
101: HNSLLVYSGD NSLLQYANHG HNMKRALLQL ETALMGPEEV TTYSPSAGEI QQPQASGQRS GMWHQDGQVS YRIETQPSHV SVFGISGNII QSEKHHKPMV
201: DYPSQGIPFG NLKQLLIACA RALAENNLDD FEKLIAKARS AVSITGDPIQ RLGAYIVEGL VARKEASGTN IYRALRCKEP AGRDLLSYMH ILYEICPYLK
301: FGYMAANGAI ADACRNENRI HIIDFQIAQG TQWMTLLQAL AARPSGAPYV RITGIDDPVS KYARGDGLTL VGKKLAAISE KFNIPVEFHA VPVFAPDVTR
401: DMLDVRPGEA LAVNFPLSLH HTPDESVDVT NPRDELLRMV KSFSPKVVTL VEQESNTNTA PFFPRFQEAL DYYSAMFESI DVTLERDKKE RINVEQHCLA
501: RDIVNVIACE GKERAERHEL LGKWKLRFAM AGFHQYPLSS YVNSVIKSLM RCYSENYTLV EEDGAMLLGW KKRYLISASA WH

Best Arabidopsis Sequence Match ( AT1G50600.3 )
(BLAST)

001: MEATQKHMIQ EGSSMFYHQP SSVKQMDLSV QTFDSYCTLE SSSGTKSHPC LNNKNNSSST TSFSSNESPI SQANNNNLSR FNNHSPEENN NSPLSGSSAT
101: NTNETELSLM LKDLETAMME PDVDNSYNNQ GGFGQQHGVV SSAMYRSMEM ISRGDLKGVL YECAKAVENY DLEMTDWLIS QLQQMVSVSG EPVQRLGAYM
201: LEGLVARLAS SGSSIYKALR CKDPTGPELL TYMHILYEAC PYFKFGYESA NGAIAEAVKN ESFVHIIDFQ ISQGGQWVSL IRALGARPGG PPNVRITGID
301: DPRSSFARQG GLELVGQRLG KLAEMCGVPF EFHGAALCCT EVEIEKLGVR NGEALAVNFP LVLHHMPDES VTVENHRDRL LRLVKHLSPN VVTLVEQEAN
401: TNTAPFLPRF VETMNHYLAV FESIDVKLAR DHKERINVEQ HCLAREVVNL IACEGVEREE RHEPLGKWRS RFHMAGFKPY PLSSYVNATI KGLLESYSEK
501: YTLEERDGAL YLGWKNQPLI TSCAWR

Arabidopsis Description

SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.