Factsheet for PGSC0003DMT400056120

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g005340.1.1	Tomato	cytosol	95.53	95.7
Solyc06g035620.2.1	Tomato	cytosol	52.41	89.88
GSMUA_Achr8P03610_001	Banana	cytosol	19.86	77.08
PGSC0003DMT400049492	Potato	cytosol	73.52	70.62
VIT_19s0014g04940.t01	Wine grape	cytosol	69.95	67.07
KRH55599	Soybean	plastid	64.58	63.56
KRH25905	Soybean	cytosol, plastid	62.79	61.8
KRH27129	Soybean	plastid	61.36	61.14
KRH22210	Soybean	cytosol, plastid	62.97	61.01
GSMUA_Achr6P24310_001	Banana	cytosol	56.17	58.69
EER97346	Sorghum	cytosol	55.28	54.21
HORVU2Hr1G043780.1	Barley	cytosol	54.56	53.51
Os07t0545800-01	Rice	cytosol, nucleus	54.2	53.06
TraesCS2B01G239400.1	Wheat	cytosol	54.02	52.98
TraesCS2D01G220200.1	Wheat	cytosol	53.85	52.81
TraesCS2A01G214400.1	Wheat	cytosol	53.67	52.63
Zm00001d006551_P001	Maize	golgi, mitochondrion	55.28	50.08
PGSC0003DMT400057111	Potato	nucleus	45.8	47.67
PGSC0003DMT400015696	Potato	cytosol	45.44	47.48
GSMUA_Achr9P12070_001	Banana	mitochondrion, plastid	41.14	44.23
PGSC0003DMT400034763	Potato	cytosol	41.86	43.82
PGSC0003DMT400060553	Potato	cytosol	40.43	43.13
PGSC0003DMT400021748	Potato	nucleus	41.14	41.14
GSMUA_Achr9P24710_001	Banana	endoplasmic reticulum, plastid	41.86	40.14
PGSC0003DMT400063944	Potato	cytosol, mitochondrion	36.49	36.49
PGSC0003DMT400005480	Potato	cytosol	24.87	28.54
PGSC0003DMT400076932	Potato	nucleus	26.83	24.75
PGSC0003DMT400026240	Potato	nucleus, plastid	27.55	23.55
PGSC0003DMT400063769	Potato	cytosol, nucleus, peroxisome	23.43	20.28
PGSC0003DMT400078286	Potato	nucleus	23.61	19.79
PGSC0003DMT400049420	Potato	cytosol	23.26	19.58
PGSC0003DMT400016258	Potato	cytosol	25.4	19.51
PGSC0003DMT400077972	Potato	cytosol	24.87	18.48
PGSC0003DMT400069949	Potato	cytosol	24.33	18.21
PGSC0003DMT400022997	Potato	cytosol, plastid	24.51	18.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400056120	EnsemblPlantsGene:PGSC0003DMG400021802	EntrezGene:102582834	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF18	PFAM:PF03514	PFscan:PS50985	PGSC:PGSC0003DMG400021802	RefSeq:XP_006363507.1
SEG:seg	UniParc:UPI000294BF9A	UniProt:M1BYZ5	MapMan:15.5.12	:	:

Description

Scarecrow [Source:PGSC_GENE;Acc:PGSC0003DMG400021802]

Coordinates

chr12:+:8028498..8031393

Molecular Weight (calculated)

62548.3 Da

IEP (calculated)

5.628

GRAVY (calculated)

-0.311

Length

559 amino acids

Sequence
(BLAST)

001: MDSDHFVGYD VTGSDLSYSS YPTVSPLENR PFGTSKFDSG NSPLANYFNS ETFTTVSAYQ EQHSCTENLS GATSSSDSSL DYNQYFHRPS PSEDHLPEAP
101: NSRNMKHTLL QLESALMGPD EEAMKSSRYL GENMGAQTSG QRYKAWNKEA QVVHQPQQSL VSILNGIQSG KRDNVMEDLP LQGVPSSNLK QLLIACARAL
201: AENKLDDFEI LVAKARSVVS VTGDPIQRLG AYIVEGLVAR KELSGTSIYR SLKCKEPAGK DLFSYMYILY EICPYLKFGY MAANGAIVEA CRNEDRIHII
301: DFQIAQGTQW MTLLQALAAR PGGAPYVRIT GIDDPVSQYA RGDGLAAVAK RLSAISEKFN IAVEFHAVPV FAPEITWDML DVRPGEALAV NFPLQLHHTP
401: DESVDVNNPR DGLIRMIKSL CPKIVTLVEQ ESNTNTAPFL PRFVEALDYY HAMFESIDVT IPRDMKERIN VEQHCLARDI VNVIACEGKE RVERHELLGK
501: WKSRFMMAGF QQYPLSSYVN SVIKDLMKRY SEHYTLVEKD GAMLLGWKER NLVSASAWF

Best Arabidopsis Sequence Match ( AT1G50600.3 )
(BLAST)

001: MEATQKHMIQ EGSSMFYHQP SSVKQMDLSV QTFDSYCTLE SSSGTKSHPC LNNKNNSSST TSFSSNESPI SQANNNNLSR FNNHSPEENN NSPLSGSSAT
101: NTNETELSLM LKDLETAMME PDVDNSYNNQ GGFGQQHGVV SSAMYRSMEM ISRGDLKGVL YECAKAVENY DLEMTDWLIS QLQQMVSVSG EPVQRLGAYM
201: LEGLVARLAS SGSSIYKALR CKDPTGPELL TYMHILYEAC PYFKFGYESA NGAIAEAVKN ESFVHIIDFQ ISQGGQWVSL IRALGARPGG PPNVRITGID
301: DPRSSFARQG GLELVGQRLG KLAEMCGVPF EFHGAALCCT EVEIEKLGVR NGEALAVNFP LVLHHMPDES VTVENHRDRL LRLVKHLSPN VVTLVEQEAN
401: TNTAPFLPRF VETMNHYLAV FESIDVKLAR DHKERINVEQ HCLAREVVNL IACEGVEREE RHEPLGKWRS RFHMAGFKPY PLSSYVNATI KGLLESYSEK
501: YTLEERDGAL YLGWKNQPLI TSCAWR

Arabidopsis Description

SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.