Factsheet for PGSC0003DMT400077972

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g076280.1.1	Tomato	cytosol	96.94	97.46
PGSC0003DMT400005480	Potato	cytosol	43.75	67.56
GSMUA_Achr10P...	Banana	nucleus	31.78	54.07
KRH29773	Soybean	cytosol	42.95	52.61
KRH29775	Soybean	nucleus	45.74	51.11
KRH29774	Soybean	cytosol	42.29	50.4
CDY39530	Canola	cytosol	40.69	49.43
GSMUA_Achr10P...	Banana	cytosol	39.36	49.42
CDY47877	Canola	nucleus	40.56	49.35
Bra028391.1-P	Field mustard	nucleus	40.56	49.19
AT2G29065.1	Thale cress	cytosol, nucleus, plastid	41.09	49.05
KRH24775	Soybean	cytosol	44.15	48.82
GSMUA_Achr8P02550_001	Banana	nucleus	25.27	48.47
KRH23091	Soybean	endoplasmic reticulum, plasma membrane	47.21	47.78
PGSC0003DMT400016258	Potato	cytosol	45.88	47.39
KRH24778	Soybean	nucleus	42.55	47.34
PGSC0003DMT400049420	Potato	cytosol	41.76	47.29
KRH10241	Soybean	cytosol, nucleus, peroxisome	43.22	47.24
Bra015584.1-P	Field mustard	cytosol	27.26	47.02
GSMUA_Achr7P15080_001	Banana	cytosol	37.1	46.66
CDY06266	Canola	cytosol	38.83	46.2
PGSC0003DMT400022997	Potato	cytosol, plastid	46.01	45.47
Os03t0690600-03	Rice	cytosol	44.15	45.42
AT1G07520.3	Thale cress	cytosol	41.76	45.11
Zm00001d028603_P001	Maize	cytosol	44.02	45.1
TraesCS1B01G037500.1	Wheat	cytosol	24.73	45.04
OQU92829	Sorghum	cytosol	43.75	44.82
Os04t0590400-01	Rice	cytosol, nucleus, peroxisome	37.9	44.81
Bra031581.1-P	Field mustard	cytosol	39.49	44.46
PGSC0003DMT400063769	Potato	cytosol, nucleus, peroxisome	37.77	43.96
Zm00001d034664_P001	Maize	plastid	32.58	43.83
GSMUA_Achr6P34090_001	Banana	nucleus	35.51	43.63
CDY06265	Canola	cytosol	40.03	43.62
Bra031580.1-P	Field mustard	cytosol	39.76	43.33
PGSC0003DMT400069949	Potato	cytosol	42.55	42.84
CDY09912	Canola	cytosol	39.36	42.29
KXG37250	Sorghum	cytosol	36.57	42.24
HORVU5Hr1G113620.1	Barley	cytosol, nucleus, peroxisome	36.17	42.24
HORVU3Hr1G012520.1	Barley	cytosol	25.53	42.11
KXG38103	Sorghum	cytosol	34.97	42.01
TraesCS5D01G494900.1	Wheat	cytosol	36.7	42.01
TraesCS5B01G494500.1	Wheat	cytosol	36.57	41.86
TraesCS5A01G481300.1	Wheat	cytosol	36.3	41.68
PGSC0003DMT400078286	Potato	nucleus	36.97	41.68
TraesCS5A01G139000.1	Wheat	cytosol, plastid	42.69	41.37
TraesCS5D01G152700.1	Wheat	cytosol, plastid	42.55	41.34
TraesCS5B01G138100.1	Wheat	cytosol, plastid	42.55	41.24
KXG21079	Sorghum	cytosol	33.91	40.93
KXG21080	Sorghum	cytosol	33.91	40.73
Zm00001d011070_P001	Maize	cytosol	33.91	40.67
HORVU5Hr1G045020.29	Barley	cytosol	42.42	40.53
Zm00001d035671_P001	Maize	cytosol	33.38	40.1
CDY09911	Canola	nucleus	30.98	39.9
Zm00001d047813_P002	Maize	nucleus	43.75	39.69
GSMUA_AchrUn_...	Banana	cytosol	34.18	39.0
HORVU3Hr1G012550.6	Barley	cytosol	28.99	36.58
TraesCS1B01G037300.1	Wheat	cytosol	33.64	35.94
OQU91407	Sorghum	nucleus	32.71	35.86
TraesCS1D01G030900.1	Wheat	cytosol	33.51	35.34
HORVU1Hr1G004440.1	Barley	cytosol	33.51	35.05
Zm00001d035670_P001	Maize	cytosol	33.64	34.85
TraesCS1D01G030800.1	Wheat	cytosol	32.45	34.81
TraesCS1A01G030300.1	Wheat	cytosol	32.45	34.56
TraesCS1D01G031200.1	Wheat	cytosol	33.24	34.29
TraesCS1A01G030200.1	Wheat	cytosol	32.85	34.26
EER91260	Sorghum	nucleus	32.71	34.12
TraesCS1D01G031000.1	Wheat	cytosol	32.71	33.93
KXG38064	Sorghum	nucleus	32.45	33.89
EES18882	Sorghum	cytosol	32.98	33.83
OQU91406	Sorghum	nucleus	33.51	33.69
EES18880	Sorghum	cytosol	32.98	33.47
TraesCS3D01G067700.1	Wheat	cytosol	31.91	33.24
TraesCS1B01G037400.1	Wheat	cytosol	31.91	33.2
TraesCS3D01G067900.1	Wheat	nucleus	30.32	33.04
TraesCS3B01G081000.1	Wheat	cytosol	31.65	32.69
TraesCS3D01G067800.1	Wheat	nucleus	29.26	32.54
Zm00001d033166_P001	Maize	nucleus	31.52	32.38
TraesCS3A01G067900.1	Wheat	cytosol	30.98	32.27
TraesCS3B01G080900.1	Wheat	nucleus	30.85	32.18
TraesCS3B01G081100.1	Wheat	nucleus	30.45	32.03
TraesCS3A01G068000.1	Wheat	nucleus	30.45	31.98
TraesCS1B01G037200.1	Wheat	nucleus	31.38	31.18
PGSC0003DMT400060553	Potato	cytosol	19.68	28.24
PGSC0003DMT400021748	Potato	nucleus	20.08	27.01
PGSC0003DMT400015696	Potato	cytosol	19.15	26.92
PGSC0003DMT400034763	Potato	cytosol	18.88	26.59
PGSC0003DMT400057111	Potato	nucleus	18.88	26.44
PGSC0003DMT400056120	Potato	cytosol	18.48	24.87
PGSC0003DMT400049492	Potato	cytosol	19.02	24.57
PGSC0003DMT400063944	Potato	cytosol, mitochondrion	16.89	22.72
PGSC0003DMT400076932	Potato	nucleus	15.16	18.81
PGSC0003DMT400026240	Potato	nucleus, plastid	15.56	17.89

Protein Annotations

EntrezGene:102599068	MapMan:15.5.12	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	UniProt:M1CZ55	PFAM:PF03514
EnsemblPlantsGene:PGSC0003DMG401030325	PGSC:PGSC0003DMG401030325	EnsemblPlants:PGSC0003DMT400077972	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF129
InterPro:TF_GRAS	UniParc:UPI000295B235	RefSeq:XP_006350781.1	SEG:seg	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG401030325]

Coordinates

chr6:+:56726987..56730260

Molecular Weight (calculated)

85169.2 Da

IEP (calculated)

5.531

GRAVY (calculated)

-0.519

Length

752 amino acids

Sequence
(BLAST)

001: MDPRFIPLSD PVNTLEFEDQ INLSSYEGSL NPPHSYNDDY VAFGVPYTAP SVDIGNFPPS SNVSSEVDSP DDHDSDSLFK YLNQILMEEN IEDKPSMFHD
101: PLALKAAEKS LYEALGKSYP PSPYRTPYHV DHQFKSPSPD SIFQTSSDHS TSSSNAHSNS MDPHWIVDPG ESRLPLPVES HPSEYSIQPL MQSNSERSHG
201: SLNNINNLNV HMDSFLNPNA LSNMFTDSES ILQFKRGVEE ANKFLPNVSQ FVVDLDKYTF PPKVEEVTKE AVVKVEKDER NHSPNGTKGR KHQYPEDSDF
301: EDERSNKHSA IYVEEEAELS EMFDRVLLCT DKGETICGDV KSEMPVDNSL DQNGQAHGSN GGKTRAKKQG TKNEAVDLRT LLVSCAQSVA ADDRRTAYEQ
401: LKQIRQHCFS IGDAYQRLAS VFADGLEARL AGTGTQLYAA LAPKKITAAE KLKAYQVYLS ACPFKKISIF FANKMIFHTA SNARTLHLID FGILYGFQWP
501: ILIQLLSEIP DGPPKLRITG IDLPQPGFRP AESLEQTGSR LAKYCERFKV PFEYNAIATQ NWENIKLEDL KLVSGETVAV NCLFRFKNLL DETVMLDSPR
601: DAVLGLIRKM NPDIFVQAVI NGSYSAPFFV TRFREALFHY STLFDMFDAT LPRDDQQRLH FEQEFYRREA MNVIACEGSE RVERPETYKQ WQVRNMRAGF
701: KILPLNQQLV QKLRCKVKAG YHRDFVFNED GKWMLQGWKG RVVCASSCWV PA

Best Arabidopsis Sequence Match ( AT1G07530.1 )
(BLAST)

001: MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS

Arabidopsis Description

SCL14SCL14 [Source:UniProtKB/TrEMBL;Acc:A0A178WH17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.