Factsheet for TraesCS3D01G067900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G081100.1	Wheat	nucleus	95.65	92.31
TraesCS3A01G068000.1	Wheat	nucleus	95.07	91.62
HORVU3Hr1G012550.6	Barley	cytosol	76.81	88.93
TraesCS3D01G067700.1	Wheat	cytosol	79.13	75.62
TraesCS3D01G067800.1	Wheat	nucleus	73.91	75.44
OQU91407	Sorghum	nucleus	54.35	54.66
KXG38064	Sorghum	nucleus	54.93	52.64
EER91260	Sorghum	nucleus	54.64	52.29
Zm00001d033166_P001	Maize	nucleus	54.49	51.37
OQU91406	Sorghum	nucleus	55.07	50.8
CDX68389	Canola	cytosol	6.23	50.59
Solyc04g011630.1.1	Tomato	cytosol	12.17	49.41
VIT_06s0004g04990.t01	Wine grape	cytosol	28.7	44.8
Bra002564.1-P	Field mustard	endoplasmic reticulum, golgi	20.43	44.48
CDX80265	Canola	endoplasmic reticulum, golgi	20.29	44.16
TraesCS1D01G030900.1	Wheat	cytosol	41.01	39.69
PGSC0003DMT400049420	Potato	cytosol	37.39	38.86
TraesCS1D01G031000.1	Wheat	cytosol	40.72	38.76
PGSC0003DMT400005480	Potato	cytosol	27.1	38.4
TraesCS1D01G030800.1	Wheat	cytosol	38.7	38.09
Bra015584.1-P	Field mustard	cytosol	24.06	38.07
GSMUA_Achr8P02550_001	Banana	nucleus	21.45	37.76
VIT_13s0019g01780.t01	Wine grape	nucleus	32.61	37.5
TraesCS1D01G031200.1	Wheat	cytosol	39.57	37.45
CDY71578	Canola	nucleus, plastid	28.26	37.43
VIT_08s0007g00510.t01	Wine grape	cytosol, plastid	37.97	36.95
GSMUA_Achr6P34090_001	Banana	nucleus	32.03	36.11
Bra028391.1-P	Field mustard	nucleus	32.32	35.97
CDY47877	Canola	nucleus	32.17	35.92
KRH10240	Soybean	cytosol	31.45	35.81
TraesCS5D01G494900.1	Wheat	cytosol	33.91	35.62
AT2G29065.1	Thale cress	cytosol, nucleus, plastid	32.46	35.56
CDY39530	Canola	cytosol	31.88	35.54
Solyc10g086530.1.1	Tomato	cytosol	38.84	35.22
PGSC0003DMT400016258	Potato	cytosol	37.1	35.16
KRH49113	Soybean	cytosol	37.25	35.01
KRH29773	Soybean	cytosol	31.01	34.85
CDY33040	Canola	nucleus	30.14	34.84
VIT_06s0004g04970.t01	Wine grape	cytosol	33.19	34.8
KRG99969	Soybean	cytosol	37.1	34.74
KRH65839	Soybean	cytosol, plastid	36.67	34.66
VIT_13s0019g01810.t01	Wine grape	cytosol	37.54	34.63
Bra000012.1-P	Field mustard	cytosol, nucleus, peroxisome	33.77	34.62
CDY07777	Canola	cytosol, nucleus, peroxisome	33.77	34.62
CDX79750	Canola	peroxisome	33.77	34.57
PGSC0003DMT400063769	Potato	cytosol, nucleus, peroxisome	32.32	34.52
KRH24780	Soybean	cytosol	32.9	34.39
VIT_06s0004g04980.t01	Wine grape	nucleus	35.07	34.38
VIT_13s0019g01710.t01	Wine grape	cytosol	36.09	34.25
TraesCS5D01G152700.1	Wheat	cytosol, plastid	38.41	34.24
Bra033813.1-P	Field mustard	nucleus	28.84	34.19
PGSC0003DMT400069949	Potato	cytosol	36.96	34.14
KRH29774	Soybean	cytosol	31.16	34.07
Solyc05g053090.1.1	Tomato	cytosol	36.67	34.05
Solyc09g010920.1.1	Tomato	cytosol	37.54	34.03
CDY06266	Canola	cytosol	31.16	34.02
KRH23095	Soybean	cytosol	32.32	33.94
PGSC0003DMT400022997	Potato	cytosol, plastid	37.25	33.77
TraesCS5D01G092000.1	Wheat	cytosol	30.14	33.77
Solyc06g082530.1.1	Tomato	cytosol	31.88	33.69
AT2G37650.1	Thale cress	cytosol	34.93	33.57
AT3G46600.1	Thale cress	cytosol	28.26	33.45
TraesCS4D01G136100.1	Wheat	cytosol	28.26	33.39
Solyc01g100200.2.1	Tomato	nucleus	32.17	33.33
KRH29775	Soybean	nucleus	32.46	33.28
KRH24773	Soybean	nucleus	33.04	33.19
AT5G59450.1	Thale cress	nucleus	29.28	33.11
CDX82987	Canola	nucleus	28.84	33.11
VIT_13s0019g01790.t01	Wine grape	cytosol	34.49	33.1
KRH23094	Soybean	cytosol	26.52	33.09
VIT_13s0019g01700.t01	Wine grape	cytosol	36.23	32.89
CDY47878	Canola	nucleus	32.9	32.85
PGSC0003DMT400078286	Potato	nucleus	31.74	32.83
KRH24775	Soybean	cytosol	32.17	32.65
TraesCS4D01G135500.1	Wheat	cytosol	30.43	32.51
TraesCS4D01G136200.1	Wheat	cytosol	28.55	32.4
KRH24778	Soybean	nucleus	31.74	32.4
CDX86475	Canola	nucleus	33.33	32.39
KRH29771	Soybean	cytosol	31.88	32.35
Bra028390.1-P	Field mustard	cytosol	33.04	32.29
AT2G29060.1	Thale cress	cytosol	32.46	32.28
VIT_06s0004g04950.t01	Wine grape	cytosol	35.22	32.23
TraesCS4D01G136000.1	Wheat	cytosol	30.29	32.2
Bra031581.1-P	Field mustard	cytosol	31.16	32.19
GSMUA_AchrUn_...	Banana	cytosol	30.43	31.87
CDX77228	Canola	cytosol	31.01	31.85
KRH23091	Soybean	endoplasmic reticulum, plasma membrane	34.06	31.63
CDY06265	Canola	cytosol	31.59	31.59
KRH29779	Soybean	cytosol	33.91	31.54
Bra031580.1-P	Field mustard	cytosol	31.45	31.45
TraesCS4D01G135900.1	Wheat	cytosol	28.99	31.35
TraesCS4D01G136300.1	Wheat	cytosol	30.58	31.31
KRH10241	Soybean	cytosol, nucleus, peroxisome	31.16	31.25
KRH23089	Soybean	cytosol	29.13	31.21
CDY15616	Canola	nucleus	32.32	31.19
Bra035653.1-P	Field mustard	cytosol	32.46	31.02
Bra030688.1-P	Field mustard	nucleus	33.33	30.96
TraesCS3D01G354100.1	Wheat	cytosol, extracellular, nucleus	36.67	30.93
CDX68388	Canola	cytosol	18.55	30.92
Solyc06g076280.1.1	Tomato	cytosol	33.33	30.75
AT1G07520.3	Thale cress	cytosol	31.01	30.75
CDY31749	Canola	cytosol	32.32	30.72
CDY09912	Canola	cytosol	31.16	30.71
KRH10243	Soybean	nucleus	29.42	30.53
PGSC0003DMT400077972	Potato	cytosol	33.04	30.32
TraesCS7D01G174100.1	Wheat	cytosol	30.58	30.06
KRH23090	Soybean	vacuole	26.96	29.95
AT1G07530.1	Thale cress	cytosol	33.04	29.65
TraesCS4D01G136400.1	Wheat	mitochondrion	30.43	29.49
TraesCS4D01G332000.1	Wheat	cytosol	28.84	29.48
TraesCS7D01G174300.1	Wheat	cytosol	31.01	29.36
VIT_06s0004g04960.t01	Wine grape	nucleus	32.61	28.23
CDY09911	Canola	nucleus	23.33	27.57
TraesCS4D01G136500.1	Wheat	peroxisome	28.41	25.55
TraesCS5D01G419400.2	Wheat	cytosol	19.28	24.18
TraesCS2D01G198200.1	Wheat	cytosol	19.13	23.78
TraesCS3D01G403100.1	Wheat	cytosol	18.7	23.37
TraesCS4D01G266400.1	Wheat	cytosol	17.54	22.57
TraesCS2D01G220200.1	Wheat	cytosol	17.83	21.58
TraesCS2D01G393200.1	Wheat	cytosol	15.36	16.91

Protein Annotations

EnsemblPlants:TraesCS3D01G067900.1	EnsemblPlantsGene:TraesCS3D01G067900	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF60
PFAM:PF03514	PFscan:PS50985	SEG:seg	MapMan:15.5.12	:	:

Description

No Description!

Coordinates

chr3D:+:29951188..29953260

Molecular Weight (calculated)

78367.8 Da

IEP (calculated)

7.749

GRAVY (calculated)

-0.432

Length

690 amino acids

Sequence
(BLAST)

001: MANTAGCDAY CNQEFIKSST AKVGHVSWGT SSSYKVYSPQ LFSVSCDETS AGWRLISVAE HPKTDSDVTL SHIEQMLMQD TDDKVRAPHG ETAIRTMEEP
101: FYELLGQKYP VLPGLLPLCG CDRLNILENG SVSRLNNGQL CNNCSVKFSS DNYHSNGSSQ ASQAPWTLSA IVGEAIQFPL GVEKMGIGLN INGLSISPES
201: HSPHMNDKDT IKHAPFHDRS RKVFPGIEEL DLLEGRRNKQ IAIFSDEPVR NEAFDKVLLC SENKPVDEDI ILQRAMADIS TKYAQKEQGR KPARRTKRGK
301: TRKKKEVVDL RSLLIHCAEA VSVNNRSLAS DILKSIRQHC SPSGDDTQRL AFYLADCLEI RLSGSGSQIN QKVITTPTNA AHILKLCHLC FTVCPYLRSS
401: YYLSNKTILD VSKGKPRVHI IDFGIFYGFQ WPSLLKQFAD REGGPPKLRI TGIELPTPGF RPDEMNKNTR LRLTEYADMF HVPLEYRQIS SKWESISIEE
501: LNIDKDEVLV VNCILRMKNV GDETITIDSA RNRVLNTIRM MKPNVFIHGV VNGSYNTPFF LSRFKEVMYH YTSMFDMLDK TTPRDNETRM ILERDIYKYA
601: ILNAIACEGS ERIERPESYK KWNVRSVRAR FEQLPLNPTI VKGIQSMVRQ IYHKDFFVDE EDQCLVLGWK GRILYALSTW KPSECKDEDD

Best Arabidopsis Sequence Match ( AT1G07530.1 )
(BLAST)

001: MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS

Arabidopsis Description

SCL14SCL14 [Source:UniProtKB/TrEMBL;Acc:A0A178WH17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.