Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g011630.1.1 | Tomato | cytosol | 16.09 | 68.82 |
| VIT_13s0019g01810.t01 | Wine grape | cytosol | 65.47 | 63.64 |
| VIT_13s0019g01700.t01 | Wine grape | cytosol | 64.37 | 61.58 |
| VIT_13s0019g01780.t01 | Wine grape | nucleus | 50.62 | 61.33 |
| VIT_13s0019g01790.t01 | Wine grape | cytosol | 60.11 | 60.78 |
| PGSC0003DMT400016258 | Potato | cytosol | 55.57 | 55.49 |
| VIT_08s0007g00510.t01 | Wine grape | cytosol, plastid | 53.65 | 55.01 |
| PGSC0003DMT400069949 | Potato | cytosol | 55.16 | 53.68 |
| Solyc05g053090.1.1 | Tomato | cytosol | 54.61 | 53.43 |
| VIT_06s0004g04990.t01 | Wine grape | cytosol | 32.19 | 52.94 |
| GSMUA_Achr10P... | Banana | nucleus | 31.64 | 52.04 |
| GSMUA_Achr10P... | Banana | cytosol | 41.13 | 49.92 |
| GSMUA_Achr7P15080_001 | Banana | cytosol | 39.61 | 48.16 |
| VIT_06s0004g04970.t01 | Wine grape | cytosol | 42.78 | 47.26 |
| OQU92829 | Sorghum | cytosol | 47.18 | 46.73 |
| VIT_06s0004g04950.t01 | Wine grape | cytosol | 48.28 | 46.55 |
| Zm00001d028603_P001 | Maize | cytosol | 46.77 | 46.32 |
| VIT_06s0004g04980.t01 | Wine grape | nucleus | 44.84 | 46.31 |
| Os03t0690600-03 | Rice | cytosol | 46.22 | 45.96 |
| GSMUA_Achr8P02550_001 | Banana | nucleus | 24.76 | 45.92 |
| Zm00001d034664_P001 | Maize | plastid | 35.08 | 45.62 |
| TraesCS1B01G037500.1 | Wheat | cytosol | 25.72 | 45.28 |
| HORVU3Hr1G012520.1 | Barley | cytosol | 28.06 | 44.74 |
| KXG38103 | Sorghum | cytosol | 38.51 | 44.73 |
| GSMUA_Achr6P34090_001 | Banana | nucleus | 37.55 | 44.61 |
| KXG21079 | Sorghum | cytosol | 37.96 | 44.3 |
| Zm00001d035671_P001 | Maize | cytosol | 37.83 | 43.93 |
| Os04t0590400-01 | Rice | cytosol, nucleus, peroxisome | 37.96 | 43.4 |
| Zm00001d011070_P001 | Maize | cytosol | 37.14 | 43.06 |
| KXG21080 | Sorghum | cytosol | 36.73 | 42.65 |
| HORVU5Hr1G045020.29 | Barley | cytosol | 45.8 | 42.31 |
| TraesCS5A01G139000.1 | Wheat | cytosol, plastid | 44.98 | 42.14 |
| HORVU5Hr1G113620.1 | Barley | cytosol, nucleus, peroxisome | 37.28 | 42.08 |
| TraesCS5D01G152700.1 | Wheat | cytosol, plastid | 44.7 | 41.99 |
| KXG37250 | Sorghum | cytosol | 37.55 | 41.94 |
| TraesCS5D01G494900.1 | Wheat | cytosol | 37.83 | 41.86 |
| TraesCS5B01G138100.1 | Wheat | cytosol, plastid | 44.57 | 41.75 |
| TraesCS5B01G494500.1 | Wheat | cytosol | 37.69 | 41.7 |
| VIT_06s0004g04960.t01 | Wine grape | nucleus | 45.53 | 41.53 |
| TraesCS5A01G481300.1 | Wheat | cytosol | 37.41 | 41.53 |
| Zm00001d047813_P002 | Maize | nucleus | 45.94 | 40.29 |
| GSMUA_AchrUn_... | Banana | cytosol | 36.18 | 39.91 |
| HORVU3Hr1G012550.6 | Barley | cytosol | 32.46 | 39.6 |
| TraesCS1B01G037300.1 | Wheat | cytosol | 35.49 | 36.65 |
| TraesCS1D01G030900.1 | Wheat | cytosol | 35.9 | 36.61 |
| OQU91407 | Sorghum | nucleus | 34.39 | 36.44 |
| TraesCS1A01G030300.1 | Wheat | cytosol | 35.21 | 36.26 |
| TraesCS3D01G067900.1 | Wheat | nucleus | 34.25 | 36.09 |
| TraesCS1D01G030800.1 | Wheat | cytosol | 34.66 | 35.95 |
| HORVU1Hr1G004440.1 | Barley | cytosol | 35.49 | 35.88 |
| Zm00001d035670_P001 | Maize | cytosol | 35.35 | 35.4 |
| Zm00001d033166_P001 | Maize | nucleus | 35.63 | 35.38 |
| TraesCS3B01G081100.1 | Wheat | nucleus | 34.66 | 35.24 |
| TraesCS1D01G031200.1 | Wheat | cytosol | 35.21 | 35.12 |
| EER91260 | Sorghum | nucleus | 34.8 | 35.09 |
| EES18882 | Sorghum | cytosol | 35.35 | 35.06 |
| TraesCS3A01G068000.1 | Wheat | nucleus | 34.53 | 35.06 |
| TraesCS1D01G031000.1 | Wheat | cytosol | 34.94 | 35.03 |
| TraesCS1A01G030200.1 | Wheat | cytosol | 34.53 | 34.81 |
| TraesCS1B01G037400.1 | Wheat | cytosol | 34.39 | 34.58 |
| OQU91406 | Sorghum | nucleus | 35.21 | 34.22 |
| EES18880 | Sorghum | cytosol | 34.53 | 33.87 |
| TraesCS3D01G067700.1 | Wheat | cytosol | 33.42 | 33.66 |
| KXG38064 | Sorghum | nucleus | 33.29 | 33.61 |
| TraesCS3B01G080900.1 | Wheat | nucleus | 33.29 | 33.56 |
| TraesCS3D01G067800.1 | Wheat | nucleus | 30.95 | 33.28 |
| TraesCS3B01G081000.1 | Wheat | cytosol | 33.15 | 33.1 |
| TraesCS3A01G067900.1 | Wheat | cytosol | 32.74 | 32.96 |
| TraesCS1B01G037200.1 | Wheat | nucleus | 33.42 | 32.1 |
| VIT_19s0090g01740.t01 | Wine grape | cytosol | 22.83 | 30.46 |
| VIT_00s0463g00020.t01 | Wine grape | nucleus | 22.01 | 29.36 |
| VIT_12s0057g00560.t01 | Wine grape | cytosol | 21.6 | 28.81 |
| VIT_19s0014g04940.t01 | Wine grape | cytosol | 20.77 | 25.9 |
| VIT_04s0044g01370.t01 | Wine grape | nucleus | 19.26 | 24.65 |
| VIT_18s0001g15270.t01 | Wine grape | cytosol, plastid | 18.16 | 23.36 |
| VIT_16s0050g00950.t01 | Wine grape | cytosol, nucleus, plastid | 16.09 | 19.86 |
Protein Annotations
| EntrezGene:100242700 | wikigene:100242700 | MapMan:15.5.12 | ProteinID:CCB56337 | ProteinID:CCB56337.1 | UniProt:F6HNW7 |
| EMBL:FN595998 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:IPR005202 | EntrezGene:LOC100242700 | wikigene:LOC100242700 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF44 | InterPro:TF_GRAS | UniParc:UPI00015C9966 | ArrayExpress:VIT_13s0019g01710 | EnsemblPlantsGene:VIT_13s0019g01710 | EnsemblPlants:VIT_13s0019g01710.t01 |
| RefSeq:XP_002278402 | RefSeq:XP_002278402.1 | RefSeq:XP_002278402.2 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr13:+:3155530..3158178
Molecular Weight (calculated)
82184.5 Da
IEP (calculated)
6.021
GRAVY (calculated)
-0.474
Length
727 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGIKLDKAS STILLGQNFT DGFKLQGPYL DKNDVDVPPW LPDTSSGNLP SWSSAGVEEN LHEDCDFNDV ALKYISQILM EEDMEEKTCM LQESLALEAT
101: EKSFYNVIGE NYPPSIDHHR ASSIDEIHED QYENNCSSFG GDNLVEPGWN WDVGEYRYPH MASQSTSSSF RSSNSADSKV DGFVDEPKSI LEIPNIFSGS
201: ESSSQFRRGA EEARKFLPNG NGLFVGVVNN LSGLLVGEVK QGHEDMGFKV EKKHPNEHFA EGSRGKRNSH PEDLDAEEDR NTKLSAIFDE LTVRSEMLDQ
301: VLLCDAVKSE AALRESLKNE ASKTLQQQEC QSKRSNLGKS RGRKKGGKKD VVDLSNLLTL CAQAVVAGNQ RSANDQLKLI RQHASPMGDG MQRMAYYFVN
401: GLEARLRGSG TEIYKGVLTR GTSAANILKA YHLFLAICPF KKLLNFFSNT TIRKLAEKAE SLHIIDFGIL YGFQWPSLIQ CLSSRPGGPP KLRITGIDLP
501: KPGFRPAERV QETGRRLANY AKSFNVPFEF NAIAQKWETI QVEDLKIDTE DVLVVNCHCR FRNLLDETVT VESPRDTVLN LIRKLNPVVF IQGIVNGGYG
601: APFFRTRFRE ALFHYSALFD MLEHIVPRER LERTVIEREF FGWEAMNVIA CEGSERIERP ESYRQCQFRN MRAGFMQLPL DEEIVNKAKE KLKLCYHKDF
701: ILYEDGPWLL QGWKGRMLFA ISSWKPA
101: EKSFYNVIGE NYPPSIDHHR ASSIDEIHED QYENNCSSFG GDNLVEPGWN WDVGEYRYPH MASQSTSSSF RSSNSADSKV DGFVDEPKSI LEIPNIFSGS
201: ESSSQFRRGA EEARKFLPNG NGLFVGVVNN LSGLLVGEVK QGHEDMGFKV EKKHPNEHFA EGSRGKRNSH PEDLDAEEDR NTKLSAIFDE LTVRSEMLDQ
301: VLLCDAVKSE AALRESLKNE ASKTLQQQEC QSKRSNLGKS RGRKKGGKKD VVDLSNLLTL CAQAVVAGNQ RSANDQLKLI RQHASPMGDG MQRMAYYFVN
401: GLEARLRGSG TEIYKGVLTR GTSAANILKA YHLFLAICPF KKLLNFFSNT TIRKLAEKAE SLHIIDFGIL YGFQWPSLIQ CLSSRPGGPP KLRITGIDLP
501: KPGFRPAERV QETGRRLANY AKSFNVPFEF NAIAQKWETI QVEDLKIDTE DVLVVNCHCR FRNLLDETVT VESPRDTVLN LIRKLNPVVF IQGIVNGGYG
601: APFFRTRFRE ALFHYSALFD MLEHIVPRER LERTVIEREF FGWEAMNVIA CEGSERIERP ESYRQCQFRN MRAGFMQLPL DEEIVNKAKE KLKLCYHKDF
701: ILYEDGPWLL QGWKGRMLFA ISSWKPA
001: MITEPSLTGI SGMVNRNRLS GLPDQPSSHS FTPVTLYDGF NYNLSSDHIN TVVAAPENSV FIREEEEEED PADDFDFSDA VLGYISQMLN EEDMDDKVCM
101: LQESLDLEAA ERSLYEAIGK KYPPSPERNL AFAERNSENL DRVVPGNYTG GDCIGFGNGG IKPLSSGFTL DFRNPQSCSS ILSVPQSNGL ITIYGDGIDE
201: SSKNNRENHQ SVWLFRREIE EANRFNPEEN ELIVNFREEN CVSKARKNSS RDEICVEEER SSKLPAVFGE DILRSDVVDK ILVHVPGGES MKEFNALRDV
301: LKKGVEKKKA SDAQGGKRRA RGRGRGRGRG GGGGQNGKKE VVDLRSLLIH CAQAVAADDR RCAGQLLKQI RLHSTPFGDG NQRLAHCFAN GLEARLAGTG
401: SQIYKGIVSK PRSAAAVLKA HQLFLACCPF RKLSYFITNK TIRDLVGNSQ RVHVIDFGIL YGFQWPTLIH RFSMYGSPKV RITGIEFPQP GFRPAQRVEE
501: TGQRLAAYAK LFGVPFEYKA IAKKWDAIQL EDLDIDRDEI TVVNCLYRAE NLHDESVKVE SCRDTVLNLI GKINPDLFVF GIVNGAYNAP FFVTRFREAL
601: FHFSSIFDML ETIVPREDEE RMFLEMEVFG REALNVIACE GWERVERPET YKQWHVRAMR SGLVQVPFDP SIMKTSLHKV HTFYHKDFVI DQDNRWLLQG
701: WKGRTVMALS VWKPESKA
101: LQESLDLEAA ERSLYEAIGK KYPPSPERNL AFAERNSENL DRVVPGNYTG GDCIGFGNGG IKPLSSGFTL DFRNPQSCSS ILSVPQSNGL ITIYGDGIDE
201: SSKNNRENHQ SVWLFRREIE EANRFNPEEN ELIVNFREEN CVSKARKNSS RDEICVEEER SSKLPAVFGE DILRSDVVDK ILVHVPGGES MKEFNALRDV
301: LKKGVEKKKA SDAQGGKRRA RGRGRGRGRG GGGGQNGKKE VVDLRSLLIH CAQAVAADDR RCAGQLLKQI RLHSTPFGDG NQRLAHCFAN GLEARLAGTG
401: SQIYKGIVSK PRSAAAVLKA HQLFLACCPF RKLSYFITNK TIRDLVGNSQ RVHVIDFGIL YGFQWPTLIH RFSMYGSPKV RITGIEFPQP GFRPAQRVEE
501: TGQRLAAYAK LFGVPFEYKA IAKKWDAIQL EDLDIDRDEI TVVNCLYRAE NLHDESVKVE SCRDTVLNLI GKINPDLFVF GIVNGAYNAP FFVTRFREAL
601: FHFSSIFDML ETIVPREDEE RMFLEMEVFG REALNVIACE GWERVERPET YKQWHVRAMR SGLVQVPFDP SIMKTSLHKV HTFYHKDFVI DQDNRWLLQG
701: WKGRTVMALS VWKPESKA
Arabidopsis Description
SCL9Scarecrow-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:O80933]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.