Factsheet for VIT_08s0007g00510.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049420	Potato	cytosol	57.97	61.9
KRG99969	Soybean	cytosol	63.47	61.06
KRH49113	Soybean	cytosol	62.34	60.22
KRH65839	Soybean	cytosol, plastid	61.78	60.0
GSMUA_Achr10P...	Banana	nucleus	36.95	59.28
PGSC0003DMT400022997	Potato	cytosol, plastid	62.48	58.21
VIT_06s0004g04990.t01	Wine grape	cytosol	36.25	58.14
Solyc09g010920.1.1	Tomato	cytosol	62.2	57.95
Solyc10g086530.1.1	Tomato	cytosol	61.5	57.29
GSMUA_Achr10P...	Banana	cytosol	47.95	56.76
VIT_13s0019g01810.t01	Wine grape	cytosol	59.52	56.42
VIT_13s0019g01700.t01	Wine grape	cytosol	58.82	54.87
GSMUA_Achr8P02550_001	Banana	nucleus	30.32	54.85
VIT_13s0019g01780.t01	Wine grape	nucleus	45.7	54.0
VIT_13s0019g01710.t01	Wine grape	cytosol	55.01	53.65
VIT_13s0019g01790.t01	Wine grape	cytosol	53.6	52.85
GSMUA_Achr7P15080_001	Banana	cytosol	44.57	52.84
Bra000012.1-P	Field mustard	cytosol, nucleus, peroxisome	48.8	51.41
CDY07777	Canola	cytosol, nucleus, peroxisome	48.8	51.41
CDX79750	Canola	peroxisome	48.8	51.34
Zm00001d034664_P001	Maize	plastid	40.2	50.98
GSMUA_Achr6P34090_001	Banana	nucleus	44.01	50.98
OQU92829	Sorghum	cytosol	51.76	50.0
Zm00001d028603_P001	Maize	cytosol	51.62	49.86
Os04t0590400-01	Rice	cytosol, nucleus, peroxisome	44.71	49.84
AT2G37650.1	Thale cress	cytosol	50.21	49.58
Os03t0690600-03	Rice	cytosol	50.78	49.25
VIT_06s0004g04950.t01	Wine grape	cytosol	52.05	48.94
TraesCS1B01G037500.1	Wheat	cytosol	28.35	48.67
VIT_06s0004g04970.t01	Wine grape	cytosol	45.13	48.63
VIT_06s0004g04980.t01	Wine grape	nucleus	48.24	48.58
HORVU3Hr1G012520.1	Barley	cytosol	30.75	47.81
KXG37250	Sorghum	cytosol	43.72	47.62
HORVU5Hr1G113620.1	Barley	cytosol, nucleus, peroxisome	42.6	46.89
TraesCS5A01G481300.1	Wheat	cytosol	42.74	46.26
GSMUA_AchrUn_...	Banana	cytosol	42.74	45.98
TraesCS5D01G494900.1	Wheat	cytosol	42.6	45.97
TraesCS5B01G494500.1	Wheat	cytosol	42.6	45.97
KXG38103	Sorghum	cytosol	39.92	45.21
VIT_06s0004g04960.t01	Wine grape	nucleus	50.63	45.04
KXG21080	Sorghum	cytosol	39.35	44.57
Zm00001d011070_P001	Maize	cytosol	39.35	44.5
TraesCS5A01G139000.1	Wheat	cytosol, plastid	48.66	44.46
TraesCS5D01G152700.1	Wheat	cytosol, plastid	48.38	44.32
TraesCS5B01G138100.1	Wheat	cytosol, plastid	48.38	44.2
KXG21079	Sorghum	cytosol	38.65	43.98
HORVU5Hr1G045020.29	Barley	cytosol	48.66	43.84
Zm00001d035671_P001	Maize	cytosol	38.36	43.45
Zm00001d047813_P002	Maize	nucleus	50.07	42.82
HORVU3Hr1G012550.6	Barley	cytosol	34.84	41.44
TraesCS1B01G037300.1	Wheat	cytosol	37.94	38.21
TraesCS3D01G067900.1	Wheat	nucleus	36.95	37.97
OQU91407	Sorghum	nucleus	36.39	37.61
Zm00001d035670_P001	Maize	cytosol	38.22	37.33
HORVU1Hr1G004440.1	Barley	cytosol	37.52	37.0
TraesCS1D01G030900.1	Wheat	cytosol	37.09	36.89
Zm00001d033166_P001	Maize	nucleus	38.08	36.89
TraesCS3B01G081100.1	Wheat	nucleus	37.09	36.78
TraesCS3A01G068000.1	Wheat	nucleus	37.09	36.73
EES18882	Sorghum	cytosol	37.8	36.56
TraesCS3D01G067700.1	Wheat	cytosol	37.09	36.43
TraesCS1D01G030800.1	Wheat	cytosol	35.83	36.23
TraesCS1D01G031000.1	Wheat	cytosol	36.95	36.14
EER91260	Sorghum	nucleus	36.67	36.06
TraesCS3B01G080900.1	Wheat	nucleus	36.67	36.06
KXG38064	Sorghum	nucleus	36.53	35.97
TraesCS3A01G067900.1	Wheat	cytosol	36.53	35.87
TraesCS3B01G081000.1	Wheat	cytosol	36.81	35.85
OQU91406	Sorghum	nucleus	37.8	35.83
TraesCS1A01G030200.1	Wheat	cytosol	36.39	35.78
TraesCS1A01G030300.1	Wheat	cytosol	35.54	35.69
TraesCS1B01G037400.1	Wheat	cytosol	36.39	35.68
EES18880	Sorghum	cytosol	37.09	35.49
TraesCS3D01G067800.1	Wheat	nucleus	33.71	35.35
TraesCS1D01G031200.1	Wheat	cytosol	36.25	35.25
TraesCS1B01G037200.1	Wheat	nucleus	34.56	32.36
VIT_19s0090g01740.t01	Wine grape	cytosol	22.99	29.91
VIT_12s0057g00560.t01	Wine grape	cytosol	22.0	28.62
VIT_00s0463g00020.t01	Wine grape	nucleus	21.58	28.07
VIT_19s0014g04940.t01	Wine grape	cytosol	21.44	26.07
VIT_04s0044g01370.t01	Wine grape	nucleus	18.9	23.59
VIT_18s0001g15270.t01	Wine grape	cytosol, plastid	18.34	23.01
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	16.36	19.69

Protein Annotations

MapMan:15.5.12	ProteinID:CCB55585	ProteinID:CCB55585.1	UniProt:F6HLC1	EMBL:FN595991	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202	PFAM:PF03514
PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF44	TIGR:TC62777	InterPro:TF_GRAS	UniParc:UPI00021098FA
ArrayExpress:VIT_08s0007g00510	EnsemblPlantsGene:VIT_08s0007g00510	EnsemblPlants:VIT_08s0007g00510.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:14792305..14795408

Molecular Weight (calculated)

80451.2 Da

IEP (calculated)

6.235

GRAVY (calculated)

-0.530

Length

709 amino acids

Sequence
(BLAST)

001: MIMDPSRRGF SSSVNGIQLG NRPFSILSDH NLVAGAKFEN SLFDRSFREV RYLKPDPASA NTASDGLSVS PEEDDCDFSD EVLKYINQML MEEDMEDQTY
101: MLQQSLDLQA AEKSFYEVLG KKYPPSGNLA DNCWIQSPSD CNTSQVQASP FSSSNSVVST MDGLVDSPNS TLQLPDLYNE SQSVWQFQKG VEEASKFLPS
201: GNELFFNLEV KASLPQGLKG GNNEVVVKSE LKDEEEHSPS GSRVRKNPQR EDIGLEEERS TKQAAVYTES TLRSEMFDMV LLCNRNNCKP HSSTPHEALQ
301: NETSSNLQQQ NGQVKGSNGG KGRGKKQSGK KEVVDLRTLL IQCAQAVAAD DRRSANELLK QVRQHSSPFG DGNQRLAHCF ADGLEARLAG TGSQIYKGLI
401: SKGRSAADIL KAYHLYVSVC PFRKMSNFFS NRSIMIRAEK ATRLHIIDFG ILYGFQWPTF IQRLSSRPGG PPKLRITGIE FPQPGFRPAE RIEETGRRLA
501: NYAASFNVPF EYNAIAKKWE TIQLEELQID RDELLVVNCL YRFETLLDET VAVDSPRNIV LNMIKKIRPD IFIQGIVNGS YNAPFFVTRF REALFHFSAQ
601: FDMLETTVLR ENWERMLIER EIFGREALNV IACEGWERVE RPETYKQWQL RNLRAGFVQL PLNRETMKRA TERVTTNYHK DFVIDEDSQW MLQGWKGRII
701: YALSAWKPA

Best Arabidopsis Sequence Match ( AT2G37650.1 )
(BLAST)

001: MITEPSLTGI SGMVNRNRLS GLPDQPSSHS FTPVTLYDGF NYNLSSDHIN TVVAAPENSV FIREEEEEED PADDFDFSDA VLGYISQMLN EEDMDDKVCM
101: LQESLDLEAA ERSLYEAIGK KYPPSPERNL AFAERNSENL DRVVPGNYTG GDCIGFGNGG IKPLSSGFTL DFRNPQSCSS ILSVPQSNGL ITIYGDGIDE
201: SSKNNRENHQ SVWLFRREIE EANRFNPEEN ELIVNFREEN CVSKARKNSS RDEICVEEER SSKLPAVFGE DILRSDVVDK ILVHVPGGES MKEFNALRDV
301: LKKGVEKKKA SDAQGGKRRA RGRGRGRGRG GGGGQNGKKE VVDLRSLLIH CAQAVAADDR RCAGQLLKQI RLHSTPFGDG NQRLAHCFAN GLEARLAGTG
401: SQIYKGIVSK PRSAAAVLKA HQLFLACCPF RKLSYFITNK TIRDLVGNSQ RVHVIDFGIL YGFQWPTLIH RFSMYGSPKV RITGIEFPQP GFRPAQRVEE
501: TGQRLAAYAK LFGVPFEYKA IAKKWDAIQL EDLDIDRDEI TVVNCLYRAE NLHDESVKVE SCRDTVLNLI GKINPDLFVF GIVNGAYNAP FFVTRFREAL
601: FHFSSIFDML ETIVPREDEE RMFLEMEVFG REALNVIACE GWERVERPET YKQWHVRAMR SGLVQVPFDP SIMKTSLHKV HTFYHKDFVI DQDNRWLLQG
701: WKGRTVMALS VWKPESKA

Arabidopsis Description

SCL9Scarecrow-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:O80933]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.