Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400034763 | Potato | cytosol | 66.79 | 68.16 |
| KRH36572 | Soybean | cytosol | 68.44 | 68.07 |
| Solyc11g012510.1.1 | Tomato | mitochondrion | 67.34 | 67.71 |
| KRH11548 | Soybean | nucleus | 68.26 | 67.39 |
| KRH51175 | Soybean | cytosol | 65.69 | 66.05 |
| KRH01979 | Soybean | cytosol | 65.87 | 65.87 |
| PGSC0003DMT400021748 | Potato | nucleus | 66.61 | 64.94 |
| VIT_12s0057g00560.t01 | Wine grape | cytosol | 64.22 | 64.22 |
| PGSC0003DMT400060553 | Potato | cytosol | 61.65 | 64.12 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 38.17 | 63.41 |
| Solyc04g014830.1.1 | Tomato | mitochondrion | 62.39 | 61.48 |
| AT4G17230.1 | Thale cress | cytosol | 59.63 | 61.44 |
| VIT_19s0090g01740.t01 | Wine grape | cytosol | 61.1 | 61.1 |
| CDY35589 | Canola | cytosol | 58.17 | 59.7 |
| CDY50128 | Canola | cytosol, plastid | 58.35 | 59.66 |
| CDY58168 | Canola | plastid | 57.61 | 59.25 |
| Bra021063.1-P | Field mustard | plastid | 57.61 | 59.25 |
| CDY42968 | Canola | cytosol | 57.98 | 59.07 |
| Bra026237.1-P | Field mustard | plastid | 57.61 | 58.69 |
| TraesCS5A01G414000.1 | Wheat | cytosol | 45.87 | 58.69 |
| TraesCS5A01G409800.1 | Wheat | nucleus, plastid | 53.21 | 57.88 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 41.47 | 56.93 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.4 | 56.54 |
| Zm00001d030500_P001 | Maize | nucleus | 53.58 | 53.87 |
| TraesCS5D01G419400.2 | Wheat | cytosol | 53.95 | 53.45 |
| Solyc05g054170.2.1 | Tomato | mitochondrion, nucleus | 32.66 | 53.45 |
| Zm00001d048199_P001 | Maize | mitochondrion, nucleus | 52.29 | 53.17 |
| Os03t0193000-01 | Rice | plastid | 51.74 | 52.71 |
| EER95348 | Sorghum | cytosol | 51.38 | 52.24 |
| Os07t0583600-01 | Rice | plasma membrane | 51.74 | 51.84 |
| TraesCS2B01G217500.1 | Wheat | cytosol | 52.48 | 51.62 |
| TraesCS4A01G039000.1 | Wheat | nucleus | 46.24 | 51.53 |
| HORVU4Hr1G071670.1 | Barley | cytosol | 50.64 | 51.49 |
| TraesCS4D01G266400.1 | Wheat | cytosol | 50.46 | 51.31 |
| HORVU2Hr1G036280.1 | Barley | cytosol | 51.93 | 50.81 |
| TraesCS2A01G189600.1 | Wheat | cytosol | 51.56 | 50.72 |
| Zm00001d006701_P001 | Maize | cytosol | 51.56 | 50.72 |
| TraesCS4B01G266700.1 | Wheat | cytosol | 49.91 | 50.65 |
| EER97449 | Sorghum | cytosol | 50.83 | 50.64 |
| TraesCS2D01G198200.1 | Wheat | cytosol | 51.56 | 50.63 |
| Zm00001d021946_P001 | Maize | cytosol | 51.01 | 49.82 |
| HORVU5Hr1G099160.1 | Barley | plastid | 53.39 | 46.19 |
| VIT_19s0014g04940.t01 | Wine grape | cytosol | 46.24 | 43.22 |
| VIT_04s0044g01370.t01 | Wine grape | nucleus | 41.47 | 39.79 |
| VIT_18s0001g15270.t01 | Wine grape | cytosol, plastid | 38.72 | 37.35 |
| VIT_06s0004g04990.t01 | Wine grape | cytosol | 24.95 | 30.77 |
| VIT_16s0050g00950.t01 | Wine grape | cytosol, nucleus, plastid | 28.99 | 26.83 |
| VIT_13s0019g01780.t01 | Wine grape | nucleus | 26.24 | 23.83 |
| VIT_13s0019g01710.t01 | Wine grape | cytosol | 29.36 | 22.01 |
| VIT_08s0007g00510.t01 | Wine grape | cytosol, plastid | 28.07 | 21.58 |
| VIT_13s0019g01790.t01 | Wine grape | cytosol | 28.44 | 21.56 |
| VIT_13s0019g01810.t01 | Wine grape | cytosol | 29.54 | 21.52 |
| VIT_06s0004g04970.t01 | Wine grape | cytosol | 24.95 | 20.67 |
| VIT_13s0019g01700.t01 | Wine grape | cytosol | 28.62 | 20.53 |
| VIT_06s0004g04980.t01 | Wine grape | nucleus | 26.42 | 20.45 |
| VIT_06s0004g04950.t01 | Wine grape | cytosol | 27.52 | 19.89 |
| VIT_06s0004g04960.t01 | Wine grape | nucleus | 26.97 | 18.44 |
Protein Annotations
| EntrezGene:100245041 | wikigene:100245041 | MapMan:15.5.12 | ProteinID:CCB57414 | ProteinID:CCB57414.1 | UniProt:F6HRV6 |
| EMBL:FN596045 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:IPR005202 | EntrezGene:LOC100245041 | wikigene:LOC100245041 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF45 | InterPro:Scarecrow-like_13 | InterPro:TF_GRAS | UniParc:UPI00015CDB25 | ArrayExpress:VIT_00s0463g00020 | EnsemblPlantsGene:VIT_00s0463g00020 |
| EnsemblPlants:VIT_00s0463g00020.t01 | unigene:Vvi.2540 | RefSeq:XP_002272401 | RefSeq:XP_002272401.1 | RefSeq:XP_010647042.1 | : |
Description
No Description!
Coordinates
chrUn:-:29700118..29704632
Molecular Weight (calculated)
60405.7 Da
IEP (calculated)
6.006
GRAVY (calculated)
-0.274
Length
545 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTSEEHQSS GGIHRLYHQP VQELQPYCLS EIQILDNNEC PSNGIQQTHL SFGTYNEQYF TLESAPVTAG YNVCDSSPSA GSISSNRSPF SPQGSQSYLS
101: DPHHSPDNAS GSPISGSSGV DDGNELRHKL RELELSLLGP ESDTTDSCNC SFRSGAHQAA SIARWKVEMI PRLDLKQVLV ACAEAVSEND MSRTADLMGV
201: LEQMVSVSGE PIQRLGAYML EGLRARLELS GSCIYKALKC KEPTGPELLS YMHILYQICP YYKFAYMSAN VVIGEAIKNE PRIHIIDFQI AQGSQWVSLI
301: QALACRPGGA PLIRITGVDD SDSAHARGGG LHMVGLRLSK VAESCNVPFE FHAAGMSGSE VELENLRICH GEALAVNFPY MLHHMPDESV STANHRDRLL
401: RLIKSLQPKV VTLVEQESNT NTSAFLPRFV ETLDYYTAMF ESIDVARPRN DKQRINAEQH CVARDIVNII ACEGAERVER HELLGKWRSR FLMAGFNPYP
501: LSSSVSLAIK DMLKEYSPNF WLQERNGALY LGWKNRILAT SCAWV
101: DPHHSPDNAS GSPISGSSGV DDGNELRHKL RELELSLLGP ESDTTDSCNC SFRSGAHQAA SIARWKVEMI PRLDLKQVLV ACAEAVSEND MSRTADLMGV
201: LEQMVSVSGE PIQRLGAYML EGLRARLELS GSCIYKALKC KEPTGPELLS YMHILYQICP YYKFAYMSAN VVIGEAIKNE PRIHIIDFQI AQGSQWVSLI
301: QALACRPGGA PLIRITGVDD SDSAHARGGG LHMVGLRLSK VAESCNVPFE FHAAGMSGSE VELENLRICH GEALAVNFPY MLHHMPDESV STANHRDRLL
401: RLIKSLQPKV VTLVEQESNT NTSAFLPRFV ETLDYYTAMF ESIDVARPRN DKQRINAEQH CVARDIVNII ACEGAERVER HELLGKWRSR FLMAGFNPYP
501: LSSSVSLAIK DMLKEYSPNF WLQERNGALY LGWKNRILAT SCAWV
001: MQTSQKHHSA AGLHMLYPQV YCSPQFQAKD NKGFSDIPSK ENFFTLESST ASGSLPSYDS PSVSITSGRS PFSPQGSQSC ISDLHHSPDN VYGSPLSGVS
101: SLAYDEAGVK SKIRELEVSL LSGDTKVEEF SGFSPAAGKS WNWDELLALT PQLDLKEVLV EAARAVADGD FATAYGFLDV LEQMVSVSGS PIQRLGTYMA
201: EGLRARLEGS GSNIYKSLKC NEPTGRELMS YMSVLYEICP YWKFAYTTAN VEILEAIAGE TRVHIIDFQI AQGSQYMFLI QELAKRPGGP PLLRVTGVDD
301: SQSTYARGGG LSLVGERLAT LAQSCGVPFE FHDAIMSGCK VQREHLGLEP GFAVVVNFPY VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT
401: NTSPFLSRFV ETLDYYTAMF ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HEVLGIWRVR MMMAGFTGWP VSTSAAFAAS EMLKAYDKNY
501: KLGGHEGALY LFWKRRPMAT CSVWKPNPN
101: SLAYDEAGVK SKIRELEVSL LSGDTKVEEF SGFSPAAGKS WNWDELLALT PQLDLKEVLV EAARAVADGD FATAYGFLDV LEQMVSVSGS PIQRLGTYMA
201: EGLRARLEGS GSNIYKSLKC NEPTGRELMS YMSVLYEICP YWKFAYTTAN VEILEAIAGE TRVHIIDFQI AQGSQYMFLI QELAKRPGGP PLLRVTGVDD
301: SQSTYARGGG LSLVGERLAT LAQSCGVPFE FHDAIMSGCK VQREHLGLEP GFAVVVNFPY VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT
401: NTSPFLSRFV ETLDYYTAMF ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HEVLGIWRVR MMMAGFTGWP VSTSAAFAAS EMLKAYDKNY
501: KLGGHEGALY LFWKRRPMAT CSVWKPNPN
Arabidopsis Description
SCL13SCARECROW-like 13 [Source:TAIR;Acc:AT4G17230]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.