Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER97449 | Sorghum | cytosol | 88.89 | 90.68 |
| Zm00001d006701_P001 | Maize | cytosol | 89.78 | 90.43 |
| Os07t0583600-01 | Rice | plasma membrane | 76.34 | 78.31 |
| TraesCS2D01G198200.1 | Wheat | cytosol | 77.24 | 77.66 |
| TraesCS2A01G189600.1 | Wheat | cytosol | 76.88 | 77.44 |
| HORVU2Hr1G036280.1 | Barley | cytosol | 76.7 | 76.84 |
| TraesCS2B01G217500.1 | Wheat | cytosol | 76.16 | 76.71 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 40.5 | 68.9 |
| Bra026077.1-P | Field mustard | cytosol | 35.66 | 67.69 |
| Bra015156.1-P | Field mustard | cytosol | 35.3 | 61.95 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 42.65 | 59.95 |
| CDY07309 | Canola | cytosol | 25.63 | 59.58 |
| CDY71156 | Canola | cytosol, plastid | 41.58 | 59.49 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.34 | 59.11 |
| AT2G04890.1 | Thale cress | cytosol | 43.19 | 58.35 |
| CDY22807 | Canola | nucleus | 43.91 | 58.33 |
| CDY37124 | Canola | nucleus | 43.91 | 58.33 |
| CDY00883 | Canola | cytosol | 42.11 | 58.02 |
| KRH74015 | Soybean | cytosol | 55.2 | 56.93 |
| VIT_12s0057g00560.t01 | Wine grape | cytosol | 55.56 | 56.88 |
| PGSC0003DMT400015696 | Potato | cytosol | 54.48 | 56.82 |
| KRH14104 | Soybean | cytosol | 55.02 | 56.33 |
| Solyc07g047950.1.1 | Tomato | mitochondrion | 54.84 | 56.15 |
| VIT_19s0090g01740.t01 | Wine grape | cytosol | 54.66 | 55.96 |
| AT5G48150.4 | Thale cress | cytosol | 48.92 | 55.71 |
| CDY05700 | Canola | cytosol, plastid | 49.46 | 55.53 |
| CDY19966 | Canola | cytosol | 48.92 | 55.26 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 49.1 | 55.13 |
| CDY00074 | Canola | cytosol, plastid | 49.1 | 55.13 |
| Bra020715.1-P | Field mustard | cytosol, plastid | 49.1 | 55.13 |
| CDY71174 | Canola | cytosol, plastid | 49.1 | 55.13 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 48.92 | 54.93 |
| Bra018860.1-P | Field mustard | nucleus | 51.61 | 54.86 |
| Bra036185.1-P | Field mustard | cytosol | 48.39 | 54.55 |
| Zm00001d048199_P001 | Maize | mitochondrion, nucleus | 51.61 | 53.73 |
| PGSC0003DMT400057111 | Potato | nucleus | 51.61 | 53.63 |
| Zm00001d030500_P001 | Maize | nucleus | 51.79 | 53.32 |
| Solyc07g065270.1.1 | Tomato | nucleus | 50.9 | 52.79 |
| KRG98562 | Soybean | nucleus | 50.36 | 51.56 |
| KRH11548 | Soybean | nucleus | 50.72 | 51.27 |
| KRH73868 | Soybean | cytosol | 50.0 | 51.19 |
| PGSC0003DMT400034763 | Potato | cytosol | 48.92 | 51.12 |
| VIT_00s0463g00020.t01 | Wine grape | nucleus | 49.82 | 51.01 |
| Solyc11g012510.1.1 | Tomato | mitochondrion | 49.46 | 50.92 |
| KRH36572 | Soybean | cytosol | 49.82 | 50.73 |
| KRH14274 | Soybean | cytosol | 49.46 | 50.64 |
| KRH46306 | Soybean | cytosol | 48.75 | 49.91 |
| PGSC0003DMT400060553 | Potato | cytosol | 46.77 | 49.81 |
| KRH51175 | Soybean | cytosol | 48.21 | 49.63 |
| KRH01979 | Soybean | cytosol | 47.13 | 48.26 |
| CDY50128 | Canola | cytosol, plastid | 46.06 | 48.22 |
| CDY58168 | Canola | plastid | 45.7 | 48.11 |
| Bra021063.1-P | Field mustard | plastid | 45.7 | 48.11 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 51.61 | 47.92 |
| CDY35589 | Canola | cytosol | 45.16 | 47.46 |
| AT4G17230.1 | Thale cress | cytosol | 44.98 | 47.45 |
| Solyc04g014830.1.1 | Tomato | mitochondrion | 46.77 | 47.2 |
| Bra026237.1-P | Field mustard | plastid | 44.8 | 46.73 |
| PGSC0003DMT400021748 | Potato | nucleus | 46.77 | 46.69 |
| CDY42968 | Canola | cytosol | 44.62 | 46.54 |
| KRH38269 | Soybean | cytosol | 28.14 | 44.48 |
| Zm00001d006551_P001 | Maize | golgi, mitochondrion | 44.27 | 40.03 |
| Zm00001d038225_P001 | Maize | cytosol | 36.56 | 36.36 |
| Solyc05g054170.2.1 | Tomato | mitochondrion, nucleus | 19.71 | 33.03 |
| Zm00001d030744_P001 | Maize | cytosol | 22.76 | 25.81 |
| Zm00001d034664_P001 | Maize | plastid | 25.09 | 25.04 |
| Zm00001d051461_P001 | Maize | cytosol | 27.24 | 25.04 |
| Zm00001d026050_P001 | Maize | mitochondrion, nucleus, plastid | 25.99 | 23.27 |
| Zm00001d002573_P001 | Maize | cytosol | 25.99 | 23.27 |
| Zm00001d011070_P001 | Maize | cytosol | 25.99 | 23.13 |
| Zm00001d035671_P001 | Maize | cytosol | 25.45 | 22.68 |
| Zm00001d003553_P001 | Maize | cytosol | 24.01 | 22.08 |
| Zm00001d048601_P001 | Maize | cytosol | 24.55 | 21.34 |
| Zm00001d048588_P001 | Maize | cytosol | 24.19 | 21.29 |
| Zm00001d048600_P001 | Maize | nucleus | 24.01 | 20.78 |
| Zm00001d048681_P001 | Maize | cytosol | 20.61 | 20.21 |
| Zm00001d028603_P001 | Maize | cytosol | 26.16 | 19.89 |
| Zm00001d035670_P001 | Maize | cytosol | 25.63 | 19.7 |
| Zm00001d048602_P001 | Maize | cytosol | 23.48 | 19.67 |
| Zm00001d007248_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 18.82 | 19.41 |
| Zm00001d041536_P001 | Maize | cytosol | 24.55 | 19.3 |
| Zm00001d007713_P001 | Maize | cytosol | 20.61 | 19.2 |
| Zm00001d033166_P001 | Maize | nucleus | 25.09 | 19.13 |
| Zm00001d048682_P001 | Maize | nucleus | 21.15 | 18.76 |
| Zm00001d048604_P001 | Maize | cytosol | 24.55 | 17.91 |
| Zm00001d042907_P001 | Maize | cytosol | 25.45 | 17.55 |
| Zm00001d047813_P002 | Maize | nucleus | 25.99 | 17.49 |
| Zm00001d048603_P001 | Maize | cytosol | 26.88 | 10.54 |
Protein Annotations
| EntrezGene:100384069 | MapMan:15.5.12 | EMBL:BT069073 | UniProt:C0PLA4 | InterPro:CIGR2 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR005202 | ProteinID:ONM59106.1 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF31 |
| InterPro:TF_GRAS | UniParc:UPI000195D207 | EnsemblPlantsGene:Zm00001d021946 | EnsemblPlants:Zm00001d021946_P001 | EnsemblPlants:Zm00001d021946_T001 | SEG:seg |
Description
GRAS-transcription factor 38
Coordinates
chr7:+:166769647..166771323
Molecular Weight (calculated)
60994.9 Da
IEP (calculated)
6.037
GRAVY (calculated)
-0.301
Length
558 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPPTSRMV QHPFGDIPSQ TPKQFLYSGS SQHLCHPYQS ASDAHVAPQR HYTVRSQSQS QSPDAGSEDF ETHSRQYTLD SSSASGCSGH GSPSCQSVHA
101: GSRSPVSHSH DDSHSGSTNG NGSPASASCV TEDPTDLKQK LKDLEAVMLG TDTDPETVDS LEIAIADRLS VEPEEWKNNM VSVPRGDLKE LLIACARAVE
201: QNNGYSIDLM VPELRKMVSV SGEPLERLGA YMVEGLVARL AASGSSIYKA LRCKEPRSSD LLSYMHFLYE ACPYFKFGYM SANGAIAEAV KGEDRIHIID
301: FHIAQGAQWV SLLQALAARP GGPPFVRVTG IDDPVSAYAR GGGLELVGKR LSHIAGLYKV PFQFDAVAIS GSEVEEGHLG VVPGEAVAVN FTLELHHIPD
401: ETVSTANHRD RVLRLVKGLS PRVLTLVEQE SNTNTAPFAQ RFAETLDYYA AIFESIDLAL PRGDRERINI EQHCLAREIV NLVACEGEER VERHEVFGKW
501: KARLMMAGFR PSPLSALVNA TIKTLLQSYS PDYKLAEREG VLYLGWKNRP LIVSSAWH
101: GSRSPVSHSH DDSHSGSTNG NGSPASASCV TEDPTDLKQK LKDLEAVMLG TDTDPETVDS LEIAIADRLS VEPEEWKNNM VSVPRGDLKE LLIACARAVE
201: QNNGYSIDLM VPELRKMVSV SGEPLERLGA YMVEGLVARL AASGSSIYKA LRCKEPRSSD LLSYMHFLYE ACPYFKFGYM SANGAIAEAV KGEDRIHIID
301: FHIAQGAQWV SLLQALAARP GGPPFVRVTG IDDPVSAYAR GGGLELVGKR LSHIAGLYKV PFQFDAVAIS GSEVEEGHLG VVPGEAVAVN FTLELHHIPD
401: ETVSTANHRD RVLRLVKGLS PRVLTLVEQE SNTNTAPFAQ RFAETLDYYA AIFESIDLAL PRGDRERINI EQHCLAREIV NLVACEGEER VERHEVFGKW
501: KARLMMAGFR PSPLSALVNA TIKTLLQSYS PDYKLAEREG VLYLGWKNRP LIVSSAWH
001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK
Arabidopsis Description
PAT1Scarecrow-like transcription factor PAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDL7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.