Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G217500.1 | Wheat | cytosol | 85.85 | 84.3 |
| HORVU2Hr1G036280.1 | Barley | cytosol | 86.21 | 84.2 |
| TraesCS2D01G198200.1 | Wheat | cytosol | 85.48 | 83.78 |
| TraesCS2A01G189600.1 | Wheat | cytosol | 84.93 | 83.39 |
| EER97449 | Sorghum | cytosol | 82.17 | 81.72 |
| Zm00001d006701_P001 | Maize | cytosol | 81.25 | 79.78 |
| Zm00001d021946_P001 | Maize | cytosol | 78.31 | 76.34 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 43.57 | 72.26 |
| Bra026077.1-P | Field mustard | cytosol | 37.5 | 69.39 |
| Bra015156.1-P | Field mustard | cytosol | 37.87 | 64.78 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 46.32 | 63.48 |
| CDY00883 | Canola | cytosol | 45.04 | 60.49 |
| CDY07309 | Canola | cytosol | 26.65 | 60.42 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.06 | 59.81 |
| CDY71156 | Canola | cytosol, plastid | 42.83 | 59.74 |
| AT2G04890.1 | Thale cress | cytosol | 44.67 | 58.84 |
| KRH74015 | Soybean | cytosol | 58.46 | 58.78 |
| KRH14104 | Soybean | cytosol | 58.27 | 58.17 |
| CDY22807 | Canola | nucleus | 44.85 | 58.1 |
| CDY37124 | Canola | nucleus | 44.85 | 58.1 |
| VIT_19s0090g01740.t01 | Wine grape | cytosol | 58.09 | 57.98 |
| VIT_12s0057g00560.t01 | Wine grape | cytosol | 58.09 | 57.98 |
| PGSC0003DMT400015696 | Potato | cytosol | 56.62 | 57.57 |
| Solyc07g047950.1.1 | Tomato | mitochondrion | 56.8 | 56.7 |
| PGSC0003DMT400057111 | Potato | nucleus | 55.88 | 56.61 |
| AT5G48150.4 | Thale cress | cytosol | 50.92 | 56.53 |
| CDY05700 | Canola | cytosol, plastid | 51.29 | 56.14 |
| Solyc07g065270.1.1 | Tomato | nucleus | 55.33 | 55.95 |
| Bra020715.1-P | Field mustard | cytosol, plastid | 51.1 | 55.94 |
| CDY71174 | Canola | cytosol, plastid | 51.1 | 55.94 |
| Bra018860.1-P | Field mustard | nucleus | 53.68 | 55.62 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 50.74 | 55.53 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 50.37 | 55.13 |
| Os03t0193000-01 | Rice | plastid | 54.04 | 54.95 |
| CDY19966 | Canola | cytosol | 49.63 | 54.66 |
| CDY00074 | Canola | cytosol, plastid | 49.63 | 54.33 |
| Bra036185.1-P | Field mustard | cytosol | 49.26 | 54.14 |
| PGSC0003DMT400034763 | Potato | cytosol | 51.29 | 52.25 |
| KRH11548 | Soybean | nucleus | 52.57 | 51.81 |
| VIT_00s0463g00020.t01 | Wine grape | nucleus | 51.84 | 51.74 |
| PGSC0003DMT400060553 | Potato | cytosol | 49.63 | 51.53 |
| Solyc11g012510.1.1 | Tomato | mitochondrion | 51.29 | 51.48 |
| KRH36572 | Soybean | cytosol | 51.65 | 51.28 |
| KRH73868 | Soybean | cytosol | 51.1 | 51.01 |
| KRG98562 | Soybean | nucleus | 50.92 | 50.83 |
| KRH14274 | Soybean | cytosol | 50.37 | 50.28 |
| KRH51175 | Soybean | cytosol | 49.63 | 49.82 |
| KRH01979 | Soybean | cytosol | 49.82 | 49.72 |
| KRH46306 | Soybean | cytosol | 49.45 | 49.36 |
| PGSC0003DMT400021748 | Potato | nucleus | 50.55 | 49.2 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 54.23 | 49.08 |
| Solyc04g014830.1.1 | Tomato | mitochondrion | 49.63 | 48.82 |
| CDY58168 | Canola | plastid | 46.69 | 47.92 |
| Bra021063.1-P | Field mustard | plastid | 46.69 | 47.92 |
| CDY50128 | Canola | cytosol, plastid | 46.69 | 47.65 |
| CDY35589 | Canola | cytosol | 46.51 | 47.65 |
| AT4G17230.1 | Thale cress | cytosol | 45.96 | 47.26 |
| Bra026237.1-P | Field mustard | plastid | 46.32 | 47.1 |
| CDY42968 | Canola | cytosol | 46.14 | 46.92 |
| Os07t0545800-01 | Rice | cytosol, nucleus | 46.51 | 44.31 |
| KRH38269 | Soybean | cytosol | 28.31 | 43.63 |
| Os01t0881500-01 | Rice | cytosol | 40.44 | 39.78 |
| Solyc05g054170.2.1 | Tomato | mitochondrion, nucleus | 21.32 | 34.83 |
| Os02t0681900-01 | Rice | cytosol | 26.65 | 23.46 |
| Os04t0580300-01 | Rice | cytosol, nucleus, plastid | 25.92 | 22.78 |
| Os11t0706200-00 | Rice | nucleus | 24.26 | 22.26 |
| Os11t0705900-01 | Rice | cytosol | 25.92 | 21.96 |
| Os04t0590400-01 | Rice | cytosol, nucleus, peroxisome | 24.45 | 20.91 |
| Os11t0705200-01 | Rice | cytosol | 26.47 | 20.81 |
| Os03t0690600-03 | Rice | cytosol | 25.55 | 19.02 |
| Os12t0573200-01 | Rice | cytosol, plasma membrane | 25.74 | 18.97 |
| Os01t0842200-01 | Rice | cytosol | 27.02 | 17.93 |
| Os11t0139600-01 | Rice | nucleus | 18.01 | 16.81 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:4343735 | EMBL:AK073470 | EMBL:AK098890 | EMBL:AK122131 | EMBL:AY062210 |
| ProteinID:BAC55608.1 | ProteinID:BAF22029.1 | ProteinID:BAT02360.1 | InterPro:CIGR2 | ProteinID:EAZ40446.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR005202 | EnsemblPlantsGene:Os07g0583600 |
| EnsemblPlants:Os07t0583600-01 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF31 | UniProt:Q8GVE1 |
| InterPro:TF_GRAS | UniParc:UPI0000004478 | RefSeq:XP_015646745.1 | SEG:seg | : | : |
Description
CHITIN INDUSIBLE GIBBERELLIN RESPONSIVE GENE 2Chitin-inducible gibberellin-responsive protein. (Os07t0583600-01);Chitin-inducible gibberellin-responsive protein. (Os07t0583600-02);Similar to Chitin-inducible gibberellin-responsive protein 2. (Os07t0583600-03)
Coordinates
chr7:+:23650525..23654038
Molecular Weight (calculated)
60111.5 Da
IEP (calculated)
6.428
GRAVY (calculated)
-0.324
Length
544 amino acids
Sequence
(BLAST)
(BLAST)
001: MADTPTSRMI HPFSNIPSQN LKQFQYSDNP QHPCHPYRAP SDTHVVPHHY GLKSHSPDAG YESQATPNKY TLDSSEGAGC MRHDSPSSQS FTTRSGSPLS
101: QEDSHSDSTD GSPVGASCVT EDPNDLKQKL KDLEAVMLGP DSEIVNSLEN SVANQLSLEP EKWVRMMGIP RGNLKELLIA CARAVEEKNS FAIDMMIPEL
201: RKIVSVSGEP LERLGAYMVE GLVARLASSG ISIYKALKCK EPKSSDLLSY MHFLYEACPY FKFGYMSANG AIAEAVKGED RIHIIDFHIS QGAQWISLLQ
301: ALAARPGGPP TVRITGIDDS VSAYARGGGL ELVGRRLSHI ASLCKVPFEF HPLAISGSKV EAAHLGVIPG EALAVNFTLE LHHIPDESVS TANHRDRLLR
401: MVKSLSPKVL TLVEMESNTN TAPFPQRFAE TLDYYTAIFE SIDLTLPRDD RERINMEQHC LAREIVNLIA CEGEERAERY EPFGKWKARL TMAGFRPSPL
501: SSLVNATIRT LLQSYSDNYK LAERDGALYL GWKSRPLVVS SAWH
101: QEDSHSDSTD GSPVGASCVT EDPNDLKQKL KDLEAVMLGP DSEIVNSLEN SVANQLSLEP EKWVRMMGIP RGNLKELLIA CARAVEEKNS FAIDMMIPEL
201: RKIVSVSGEP LERLGAYMVE GLVARLASSG ISIYKALKCK EPKSSDLLSY MHFLYEACPY FKFGYMSANG AIAEAVKGED RIHIIDFHIS QGAQWISLLQ
301: ALAARPGGPP TVRITGIDDS VSAYARGGGL ELVGRRLSHI ASLCKVPFEF HPLAISGSKV EAAHLGVIPG EALAVNFTLE LHHIPDESVS TANHRDRLLR
401: MVKSLSPKVL TLVEMESNTN TAPFPQRFAE TLDYYTAIFE SIDLTLPRDD RERINMEQHC LAREIVNLIA CEGEERAERY EPFGKWKARL TMAGFRPSPL
501: SSLVNATIRT LLQSYSDNYK LAERDGALYL GWKSRPLVVS SAWH
001: MRIKMRLSVF IIPLVESRQA SGIINKQSTS LLIRFSLYLE ASISTKSFFS KSQRISQTQS PICLSANYYQ PDNLDMEATQ KHMIQEGSSM FYHQPSSVKQ
101: MDLSVQTFDS YCTLESSSGT KSHPCLNNKN NSSSTTSFSS NESPISQANN NNLSRFNNHS PEENNNSPLS GSSATNTNET ELSLMLKDLE TAMMEPDVDN
201: SYNNQGGFGQ QHGVVSSAMY RSMEMISRGD LKGVLYECAK AVENYDLEMT DWLISQLQQM VSVSGEPVQR LGAYMLEGLV ARLASSGSSI YKALRCKDPT
301: GPELLTYMHI LYEACPYFKF GYESANGAIA EAVKNESFVH IIDFQISQGG QWVSLIRALG ARPGGPPNVR ITGIDDPRSS FARQGGLELV GQRLGKLAEM
401: CGVPFEFHGA ALCCTEVEIE KLGVRNGEAL AVNFPLVLHH MPDESVTVEN HRDRLLRLVK HLSPNVVTLV EQEANTNTAP FLPRFVETMN HYLAVFESID
501: VKLARDHKER INVEQHCLAR EVVNLIACEG VEREERHEPL GKWRSRFHMA GFKPYPLSSY VNATIKGLLE SYSEKYTLEE RDGALYLGWK NQPLITSCAW
601: R
101: MDLSVQTFDS YCTLESSSGT KSHPCLNNKN NSSSTTSFSS NESPISQANN NNLSRFNNHS PEENNNSPLS GSSATNTNET ELSLMLKDLE TAMMEPDVDN
201: SYNNQGGFGQ QHGVVSSAMY RSMEMISRGD LKGVLYECAK AVENYDLEMT DWLISQLQQM VSVSGEPVQR LGAYMLEGLV ARLASSGSSI YKALRCKDPT
301: GPELLTYMHI LYEACPYFKF GYESANGAIA EAVKNESFVH IIDFQISQGG QWVSLIRALG ARPGGPPNVR ITGIDDPRSS FARQGGLELV GQRLGKLAEM
401: CGVPFEFHGA ALCCTEVEIE KLGVRNGEAL AVNFPLVLHH MPDESVTVEN HRDRLLRLVK HLSPNVVTLV EQEANTNTAP FLPRFVETMN HYLAVFESID
501: VKLARDHKER INVEQHCLAR EVVNLIACEG VEREERHEPL GKWRSRFHMA GFKPYPLSSY VNATIKGLLE SYSEKYTLEE RDGALYLGWK NQPLITSCAW
601: R
Arabidopsis Description
SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [mitochondrion,golgi]
SUBAcon: [mitochondrion,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.