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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra018296.1-P
Bra033467.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G04890.1 Bra000214.1-P AT2G41100.1 17360592
AT2G04890.1 Bra018296.1-P AT3G51920.1 17360592
AT2G04890.1 Bra033467.1-P AT3G51920.1 17360592
AT2G04890.1 Bra002368.1-P AT5G21274.1 17360592
AT2G04890.1 Bra006595.1-P AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY00883 Canola cytosol 94.34 74.07
AT2G04890.1 Thale cress cytosol 87.74 67.55
Bra026077.1-P Field mustard cytosol 58.18 62.93
GSMUA_Achr4P07010_001 Banana cytosol 49.06 47.56
Bra020715.1-P Field mustard cytosol, plastid 73.58 47.08
Bra036185.1-P Field mustard cytosol 72.33 46.46
TraesCS5A01G414000.1 Wheat cytosol 60.69 45.31
TraesCS5A01G409800.1 Wheat nucleus, plastid 63.52 40.32
GSMUA_Achr4P11050_001 Banana nucleus 49.37 39.55
Bra018860.1-P Field mustard nucleus 65.09 39.43
Os07t0583600-01 Rice plasma membrane 64.78 37.87
Bra017915.1-P Field mustard cytoskeleton, cytosol, nucleus, plastid 48.43 37.75
Os03t0193000-01 Rice plastid 63.21 37.57
Zm00001d030500_P001 Maize nucleus 63.84 37.45
Zm00001d048199_P001 Maize mitochondrion, nucleus 62.89 37.31
HORVU4Hr1G071670.1 Barley cytosol 62.58 37.13
TraesCS5D01G419400.2 Wheat cytosol 64.15 37.09
TraesCS2B01G217500.1 Wheat cytosol 64.15 36.82
TraesCS4D01G266400.1 Wheat cytosol 61.95 36.75
EER97449 Sorghum cytosol 63.21 36.75
EER95348 Sorghum cytosol 61.64 36.57
GSMUA_AchrUn_... Banana nucleus 49.06 36.45
HORVU2Hr1G036280.1 Barley cytosol 63.84 36.45
TraesCS2D01G198200.1 Wheat cytosol 63.52 36.4
TraesCS4B01G266700.1 Wheat cytosol 61.32 36.31
Zm00001d006701_P001 Maize cytosol 63.21 36.28
TraesCS2A01G189600.1 Wheat cytosol 62.89 36.1
Zm00001d021946_P001 Maize cytosol 61.95 35.3
TraesCS4A01G039000.1 Wheat nucleus 53.46 34.76
HORVU5Hr1G099160.1 Barley plastid 63.84 32.22
Bra026237.1-P Field mustard plastid 53.14 31.59
Bra021063.1-P Field mustard plastid 52.52 31.51
Bra002564.1-P Field mustard endoplasmic reticulum, golgi 28.3 28.39
Bra012280.1-P Field mustard cytosol 48.74 28.23
Bra028312.1-P Field mustard cytosol 37.74 26.43
Bra022596.1-P Field mustard plastid 38.36 21.07
Bra015584.1-P Field mustard cytosol 24.53 17.89
Bra033813.1-P Field mustard nucleus 29.87 16.32
Bra028391.1-P Field mustard nucleus 30.5 15.65
Bra000012.1-P Field mustard cytosol, nucleus, peroxisome 32.08 15.16
Bra028390.1-P Field mustard cytosol 31.76 14.31
Bra031581.1-P Field mustard cytosol 29.87 14.22
Bra030688.1-P Field mustard nucleus 32.08 13.73
Bra035653.1-P Field mustard cytosol 30.82 13.57
Bra031580.1-P Field mustard cytosol 29.25 13.48
Protein Annotations
EnsemblPlants:Bra015156.1EnsemblPlants:Bra015156.1-PEnsemblPlantsGene:Bra015156GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR005202InterPro:TF_GRAS
PANTHER:PTHR31636PANTHER:PTHR31636:SF57PFAM:PF03514PFscan:PS50985UniParc:UPI00025412A9UniProt:M4DF84
MapMan:15.5.12:::::
Description
AT2G04890 (E=2e-163) SCL21 | SCL21 (SCARECROW-LIKE 21); transcription factor
Coordinates
chrA07:+:3004878..3005834
Molecular Weight (calculated)
35778.9 Da
IEP (calculated)
6.055
GRAVY (calculated)
-0.095
Length
318 amino acids
Sequence
(BLAST)
001: MLEGLVARLA TTGSSIYKSL QSREPESCDF LSYDYLLHEV CPYFKFGYMS ANGAIVEAMK DEERIHIIDF EIGEGSQWVA LIQAFSARPG GAPNIRIIGI
101: GDGSKLVAVR RRLEKLAKKF DVPFNFHPVS VSSCEVEAEN LDARIGEALG VNFAYMLHHL PDESVSTENH RDRVLRIVKS LSPKVVTLVE QECNTNTSPF
201: LPRFLETLSY YTAMFESIDV ILPRNHKERI NVEQHCLASN VVNIIACEGA ERIERHELLG KWKSRFSMAG FEPYPLSSVV SATIRALLKY YNNGYGIEER
301: DGALYLGWMD RILVSSCA
Best Arabidopsis Sequence Match ( AT2G04890.1 )
(BLAST)
001: MDNVRGSIML QPLPEIAESI DDAICHELSM WPDDAKDLLL IVEAISRGDL KLVLVACAKA VSENNLLMAR WCMGELRGMV SISGEPIQRL GAYMLEGLVA
101: RLAASGSSIY KSLQSREPES YEFLSYVYVL HEVCPYFKFG YMSANGAIAE AMKDEERIHI IDFQIGQGSQ WIALIQAFAA RPGGAPNIRI TGVGDGSVLV
201: TVKKRLEKLA KKFDVPFRFN AVSRPSCEVE VENLDVRDGE ALGVNFAYML HHLPDESVSM ENHRDRLLRM VKSLSPKVVT LVEQECNTNT SPFLPRFLET
301: LSYYTAMFES IDVMLPRNHK ERINIEQHCM ARDVVNIIAC EGAERIERHE LLGKWKSRFS MAGFEPYPLS SIISATIRAL LRDYSNGYAI EERDGALYLG
401: WMDRILVSSC AWK
Arabidopsis Description
SCL21SCL21 [Source:UniProtKB/TrEMBL;Acc:A0A178VWV4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.