Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G409800.1 | Wheat | nucleus, plastid | 88.91 | 97.6 |
| Zm00001d030500_P001 | Maize | nucleus | 80.36 | 81.55 |
| HORVU5Hr1G099160.1 | Barley | plastid | 92.73 | 80.95 |
| TraesCS4D01G266400.1 | Wheat | cytosol | 68.91 | 70.71 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 40.73 | 68.29 |
| Bra026077.1-P | Field mustard | cytosol | 34.36 | 64.29 |
| Bra015156.1-P | Field mustard | cytosol | 37.09 | 64.15 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 43.82 | 60.71 |
| CDY00883 | Canola | cytosol | 44.18 | 60.0 |
| AT2G04890.1 | Thale cress | cytosol | 44.73 | 59.56 |
| VIT_12s0057g00560.t01 | Wine grape | cytosol | 58.73 | 59.27 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.64 | 58.64 |
| KRH14104 | Soybean | cytosol | 57.64 | 58.17 |
| KRH74015 | Soybean | cytosol | 56.91 | 57.86 |
| Solyc07g047950.1.1 | Tomato | mitochondrion | 57.27 | 57.8 |
| PGSC0003DMT400015696 | Potato | cytosol | 56.0 | 57.57 |
| VIT_19s0090g01740.t01 | Wine grape | cytosol | 56.36 | 56.88 |
| CDY71156 | Canola | cytosol, plastid | 40.0 | 56.41 |
| AT5G48150.4 | Thale cress | cytosol | 50.18 | 56.33 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 50.18 | 55.53 |
| CDY07309 | Canola | cytosol | 24.18 | 55.42 |
| CDY05700 | Canola | cytosol, plastid | 50.0 | 55.33 |
| Bra020715.1-P | Field mustard | cytosol, plastid | 50.0 | 55.33 |
| CDY71174 | Canola | cytosol, plastid | 50.0 | 55.33 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 50.0 | 55.33 |
| CDY19966 | Canola | cytosol | 49.45 | 55.06 |
| CDY37124 | Canola | nucleus | 42.0 | 55.0 |
| CDY22807 | Canola | nucleus | 42.0 | 55.0 |
| CDY00074 | Canola | cytosol, plastid | 49.64 | 54.93 |
| Bra036185.1-P | Field mustard | cytosol | 49.27 | 54.75 |
| TraesCS2D01G198200.1 | Wheat | cytosol | 54.91 | 54.41 |
| VIT_00s0463g00020.t01 | Wine grape | nucleus | 53.45 | 53.95 |
| PGSC0003DMT400057111 | Potato | nucleus | 52.0 | 53.26 |
| KRH73868 | Soybean | cytosol | 52.73 | 53.21 |
| Solyc07g065270.1.1 | Tomato | nucleus | 52.0 | 53.16 |
| Bra018860.1-P | Field mustard | nucleus | 50.55 | 52.95 |
| KRH14274 | Soybean | cytosol | 52.18 | 52.66 |
| KRG98562 | Soybean | nucleus | 51.82 | 52.29 |
| PGSC0003DMT400034763 | Potato | cytosol | 50.55 | 52.06 |
| PGSC0003DMT400060553 | Potato | cytosol | 48.73 | 51.15 |
| Solyc11g012510.1.1 | Tomato | mitochondrion | 50.36 | 51.11 |
| KRH46306 | Soybean | cytosol | 50.55 | 51.01 |
| KRH01979 | Soybean | cytosol | 50.36 | 50.83 |
| KRH11548 | Soybean | nucleus | 50.73 | 50.54 |
| KRH51175 | Soybean | cytosol | 49.64 | 50.37 |
| KRH36572 | Soybean | cytosol | 50.0 | 50.18 |
| AT4G17230.1 | Thale cress | cytosol | 48.18 | 50.09 |
| Bra021063.1-P | Field mustard | plastid | 48.18 | 50.0 |
| CDY58168 | Canola | plastid | 48.18 | 50.0 |
| CDY50128 | Canola | cytosol, plastid | 47.82 | 49.34 |
| CDY35589 | Canola | cytosol | 47.27 | 48.96 |
| Solyc04g014830.1.1 | Tomato | mitochondrion | 48.73 | 48.46 |
| Bra026237.1-P | Field mustard | plastid | 47.09 | 48.41 |
| CDY42968 | Canola | cytosol | 47.09 | 48.41 |
| PGSC0003DMT400021748 | Potato | nucleus | 48.55 | 47.76 |
| KRH38269 | Soybean | cytosol | 29.82 | 46.46 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 50.55 | 46.26 |
| TraesCS2D01G220200.1 | Wheat | cytosol | 43.64 | 42.11 |
| TraesCS3D01G403100.1 | Wheat | cytosol | 38.18 | 38.04 |
| Solyc05g054170.2.1 | Tomato | mitochondrion, nucleus | 21.45 | 35.44 |
| TraesCS4D01G135900.1 | Wheat | cytosol | 27.27 | 23.51 |
| TraesCS2D01G393200.1 | Wheat | cytosol | 26.73 | 23.45 |
| TraesCS4D01G136100.1 | Wheat | cytosol | 24.73 | 23.29 |
| TraesCS4D01G136200.1 | Wheat | cytosol | 24.73 | 22.37 |
| TraesCS4D01G135500.1 | Wheat | cytosol | 25.45 | 21.67 |
| TraesCS7D01G174100.1 | Wheat | cytosol | 26.36 | 20.66 |
| TraesCS4D01G332000.1 | Wheat | cytosol | 25.27 | 20.59 |
| TraesCS7D01G174300.1 | Wheat | cytosol | 27.27 | 20.58 |
| TraesCS5D01G494900.1 | Wheat | cytosol | 24.55 | 20.55 |
| TraesCS4D01G136300.1 | Wheat | cytosol | 24.55 | 20.03 |
| TraesCS4D01G136000.1 | Wheat | cytosol | 23.27 | 19.72 |
| TraesCS4D01G136400.1 | Wheat | mitochondrion | 25.45 | 19.66 |
| TraesCS5D01G092000.1 | Wheat | cytosol | 22.0 | 19.64 |
| TraesCS3D01G067900.1 | Wheat | nucleus | 24.18 | 19.28 |
| TraesCS1D01G030800.1 | Wheat | cytosol | 24.55 | 19.26 |
| TraesCS1D01G030900.1 | Wheat | cytosol | 24.36 | 18.79 |
| TraesCS1D01G031000.1 | Wheat | cytosol | 24.36 | 18.48 |
| TraesCS5D01G152700.1 | Wheat | cytosol, plastid | 25.82 | 18.35 |
| TraesCS1D01G031200.1 | Wheat | cytosol | 23.64 | 17.83 |
| TraesCS3D01G067700.1 | Wheat | cytosol | 23.27 | 17.73 |
| TraesCS3D01G067800.1 | Wheat | nucleus | 21.64 | 17.6 |
| TraesCS4D01G136500.1 | Wheat | peroxisome | 24.18 | 17.34 |
| TraesCS3D01G354100.1 | Wheat | cytosol, extracellular, nucleus | 24.36 | 16.38 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G419400.2 | EnsemblPlantsGene:TraesCS5D01G419400 | InterPro:CIGR2 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF31 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | : |
Description
No Description!
Coordinates
chr5D:-:480479712..480481364
Molecular Weight (calculated)
60895.0 Da
IEP (calculated)
6.199
GRAVY (calculated)
-0.236
Length
550 amino acids
Sequence
(BLAST)
(BLAST)
001: LSHKVAITSM SAKASERTYR CSDDSQMAYY NNSVPLAENG RFYMMQNHLD VHYTSSGDGS QKISSNPQVF EAQYCTLESS SANGVYPTQS STSSHSISPI
101: SGSPLSQNDS HSYHTYDSPP TASCVTEIPD FQSKLKELEN AILGPELDIA SDSPESLLQA NHPLKQDNWR QLLGINTGDL KQVIIACGKA VAANDMYATE
201: LLISELGQLV SVSGDPMQRL GAYMLEGLVA RLSFSGSKLY KSLKCKEPTS SELMSYMHLL CEICPFYKFG YMSANGAIAE AIKGENFVHI IDFQIAQGSQ
301: WITIIQALAA RPGGPPFLRI TGIDDSNSAY ARGGGLDMVG TRLHSISASC GLPFEFNAVH AASHEVYIQH LDTRPGEAIV VNFAYQLHHT PDESVSVENH
401: RDRIIRMIKS LSPRVVTLVE QESNTNTSAF LPRYLETLDY YTAMFESIDV ALPRDDKRRI STEQHCVARD IVNLIACEGA ERVERHEVFG KWKARFAMAG
501: FRPYPLSSVV NNTIKTLLDS YHSCYRLEER DGVLYLGWKG RVLVVSSAWC
101: SGSPLSQNDS HSYHTYDSPP TASCVTEIPD FQSKLKELEN AILGPELDIA SDSPESLLQA NHPLKQDNWR QLLGINTGDL KQVIIACGKA VAANDMYATE
201: LLISELGQLV SVSGDPMQRL GAYMLEGLVA RLSFSGSKLY KSLKCKEPTS SELMSYMHLL CEICPFYKFG YMSANGAIAE AIKGENFVHI IDFQIAQGSQ
301: WITIIQALAA RPGGPPFLRI TGIDDSNSAY ARGGGLDMVG TRLHSISASC GLPFEFNAVH AASHEVYIQH LDTRPGEAIV VNFAYQLHHT PDESVSVENH
401: RDRIIRMIKS LSPRVVTLVE QESNTNTSAF LPRYLETLDY YTAMFESIDV ALPRDDKRRI STEQHCVARD IVNLIACEGA ERVERHEVFG KWKARFAMAG
501: FRPYPLSSVV NNTIKTLLDS YHSCYRLEER DGVLYLGWKG RVLVVSSAWC
001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK
Arabidopsis Description
PAT1Scarecrow-like transcription factor PAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDL7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.