Factsheet for Bra021063.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58168	Canola	plastid	100.0	100.0
Bra026237.1-P	Field mustard	plastid	88.49	87.66
AT4G17230.1	Thale cress	cytosol	86.42	86.58
KRH36572	Soybean	cytosol	60.38	58.39
KRH51175	Soybean	cytosol	59.62	58.3
KRH11548	Soybean	nucleus	60.38	57.97
KRH01979	Soybean	cytosol	59.43	57.8
VIT_00s0463g00020.t01	Wine grape	nucleus	59.25	57.61
Bra026077.1-P	Field mustard	cytosol	31.89	57.48
PGSC0003DMT400034763	Potato	cytosol	55.66	55.24
Solyc11g012510.1.1	Tomato	mitochondrion	56.42	55.17
PGSC0003DMT400060553	Potato	cytosol	53.21	53.82
PGSC0003DMT400021748	Potato	nucleus	56.6	53.67
GSMUA_Achr4P07010_001	Banana	cytosol	32.64	52.74
Bra015156.1-P	Field mustard	cytosol	31.51	52.52
TraesCS5A01G409800.1	Wheat	nucleus, plastid	49.43	52.3
Solyc04g014830.1.1	Tomato	mitochondrion	53.96	51.72
TraesCS5A01G414000.1	Wheat	cytosol	41.32	51.41
TraesCS5D01G419400.2	Wheat	cytosol	50.0	48.18
TraesCS4A01G039000.1	Wheat	nucleus	43.96	47.65
EER95348	Sorghum	cytosol	47.55	47.01
Zm00001d006701_P001	Maize	cytosol	49.06	46.93
Os03t0193000-01	Rice	plastid	47.36	46.92
HORVU4Hr1G071670.1	Barley	cytosol	47.36	46.83
Os07t0583600-01	Rice	plasma membrane	47.92	46.69
Bra018860.1-P	Field mustard	nucleus	46.23	46.67
EER97449	Sorghum	cytosol	48.11	46.62
TraesCS2B01G217500.1	Wheat	cytosol	48.68	46.57
TraesCS4D01G266400.1	Wheat	cytosol	46.98	46.46
Zm00001d048199_P001	Maize	mitochondrion, nucleus	46.98	46.46
GSMUA_Achr4P11050_001	Banana	nucleus	34.72	46.35
TraesCS2D01G198200.1	Wheat	cytosol	48.49	46.31
Bra020715.1-P	Field mustard	cytosol, plastid	43.4	46.28
Bra036185.1-P	Field mustard	cytosol	43.02	46.06
TraesCS2A01G189600.1	Wheat	cytosol	48.11	46.03
HORVU2Hr1G036280.1	Barley	cytosol	48.3	45.96
TraesCS4B01G266700.1	Wheat	cytosol	46.42	45.81
GSMUA_AchrUn_...	Banana	nucleus	36.98	45.79
Zm00001d030500_P001	Maize	nucleus	46.79	45.76
Zm00001d021946_P001	Maize	cytosol	48.11	45.7
Bra017915.1-P	Field mustard	cytoskeleton, cytosol, nucleus, plastid	32.83	42.65
Solyc05g054170.2.1	Tomato	mitochondrion, nucleus	26.23	41.74
HORVU5Hr1G099160.1	Barley	plastid	48.68	40.95
Bra012280.1-P	Field mustard	cytosol	37.17	35.88
Bra002564.1-P	Field mustard	endoplasmic reticulum, golgi	18.3	30.6
Bra028312.1-P	Field mustard	cytosol	24.91	29.07
Bra022596.1-P	Field mustard	plastid	26.6	24.35
Bra015584.1-P	Field mustard	cytosol	19.06	23.17
Bra028391.1-P	Field mustard	nucleus	24.72	21.13
Bra033813.1-P	Field mustard	nucleus	22.26	20.27
Bra000012.1-P	Field mustard	cytosol, nucleus, peroxisome	25.66	20.21
Bra028390.1-P	Field mustard	cytosol	26.42	19.83
Bra031581.1-P	Field mustard	cytosol	24.91	19.76
Bra030688.1-P	Field mustard	nucleus	26.6	18.98
Bra035653.1-P	Field mustard	cytosol	24.91	18.28
Bra031580.1-P	Field mustard	cytosol	23.02	17.68

Protein Annotations

EnsemblPlants:Bra021063.1	EnsemblPlants:Bra021063.1-P	EnsemblPlantsGene:Bra021063	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:Scarecrow-like_13
InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF45	PFAM:PF03514	PFscan:PS50985	SEG:seg
UniParc:UPI0002546EE2	UniProt:M4DX17	MapMan:15.5.12	:	:	:

Description

AT4G17230 (E=2e-255) SCL13 | SCL13 (Scarecrow-like 13); transcription factor

Coordinates

chrA08:-:10115987..10117579

Molecular Weight (calculated)

58429.2 Da

IEP (calculated)

5.948

GRAVY (calculated)

-0.278

Length

530 amino acids

Sequence
(BLAST)

001: MQTSQKHHSA AGLHMLYPQP HCSPQFQMID NNGSSKESFF TLESSTASGT TLPSYDSPSS VSIKSGRSPF SPQGSHSCIS DPHPSPENVY ESSLTAASSY
101: IYDEAGVKSK IRELEDTLLS SDPKVEEYSG FSPAAGKSWN WDELLALTPQ LDLKEVLLEG ARAVADGDFA TACGFIDVLE QMVSVSGSPI QRLGAYMAEG
201: LRARLEGSGG NIYRALKCNE PTGRELMSYM GVLYEICPYW KFAYTAANAA ILEATAGDNR IHVIDFQIAQ GSQYMFLIHE LAKRPGGPPL LRVTGVDDSQ
301: SYYARGGGLT LVGEKLANMA KSCGVPFEFH DAIMSGCEVH REHLGVEPGF AVVVNFPYVL HHMPDESVSV ENHRDRLLHL IKSLGPRLVT LVEQESNTNT
401: SPFLSRFAET LDYYTAMFES IDAARPRDDK QRISAEQHCV ARDIVNMIAC EERERVERHE VLGKWRVRMM MAGFVGWPVG GSAAFAASEM LKGYDKNYKL
501: GGSDGALYLF WKRRPMATCS AWKPNLNQIV

Best Arabidopsis Sequence Match ( AT4G17230.2 )
(BLAST)

001: MQTSQKHHSA AGLHMLYPQV YCSPQFQAKD NKGFSDIPSK ENFFTLESST ASGSLPSYDS PSVSITSGRS PFSPQGSQSC ISDLHHSPDN VYGSPLSGVS
101: SLAYDEAGVK SKIRELEVSL LSGDTKVEEF SGFSPAAGKS WNWDELLALT PQLDLKEVLV EAARAVADGD FATAYGFLDV LEQMVSVSGS PIQRLGTYMA
201: EGLRARLEGS GSNIYKSLKC NEPTGRELMS YMSVLYEICP YWKFAYTTAN VEILEAIAGE TRVHIIDFQI AQGSQYMFLI QELAKRPGGP PLLRVTGVDD
301: SQSTYARGGG LSLVGERLAT LAQSCGVPFE FHDAIMSGCK VQREHLGLEP GFAVVVNFPY VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT
401: NTSPFLSRFV ETLDYYTAMF ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HEVLGIWRVR MMMAGFTGWP VSTSAAFAAS EMLKAYDKNY
501: KLGGHEGALY LFWKRRPMAT CSVWKPNPN

Arabidopsis Description

SCL13SCARECROW-like 13 [Source:TAIR;Acc:AT4G17230]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.