Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4A01G039000.1 | Wheat | nucleus | 87.34 | 95.91 |
TraesCS4D01G266400.1 | Wheat | cytosol | 95.16 | 95.34 |
HORVU4Hr1G071670.1 | Barley | cytosol | 95.16 | 95.34 |
Os03t0193000-01 | Rice | plastid | 79.52 | 79.81 |
Zm00001d048199_P001 | Maize | mitochondrion, nucleus | 74.3 | 74.44 |
EER95348 | Sorghum | cytosol | 74.3 | 74.44 |
Bra026077.1-P | Field mustard | cytosol | 34.64 | 63.27 |
GSMUA_Achr4P07010_001 | Banana | cytosol | 37.8 | 61.89 |
Bra015156.1-P | Field mustard | cytosol | 36.31 | 61.32 |
CDY00883 | Canola | cytosol | 43.76 | 58.02 |
GSMUA_Achr4P11050_001 | Banana | nucleus | 42.09 | 56.93 |
AT2G04890.1 | Thale cress | cytosol | 43.58 | 56.66 |
VIT_12s0057g00560.t01 | Wine grape | cytosol | 56.42 | 55.6 |
CDY07309 | Canola | cytosol | 24.77 | 55.42 |
GSMUA_AchrUn_... | Banana | nucleus | 44.13 | 55.37 |
CDY71156 | Canola | cytosol, plastid | 39.66 | 54.62 |
PGSC0003DMT400015696 | Potato | cytosol | 53.63 | 53.83 |
Solyc07g047950.1.1 | Tomato | mitochondrion | 54.56 | 53.76 |
AT5G48150.4 | Thale cress | cytosol | 48.98 | 53.67 |
KRH74015 | Soybean | cytosol | 53.82 | 53.42 |
CDY54511 | Canola | cytosol, nucleus, plastid | 49.35 | 53.32 |
CDY19966 | Canola | cytosol | 48.98 | 53.24 |
VIT_19s0090g01740.t01 | Wine grape | cytosol | 54.0 | 53.21 |
CDX86324 | Canola | cytosol, nucleus, plastid | 49.16 | 53.12 |
CDY37124 | Canola | nucleus | 41.53 | 53.1 |
CDY22807 | Canola | nucleus | 41.53 | 53.1 |
Bra036185.1-P | Field mustard | cytosol | 48.79 | 52.93 |
CDY71174 | Canola | cytosol, plastid | 48.98 | 52.92 |
Bra020715.1-P | Field mustard | cytosol, plastid | 48.98 | 52.92 |
CDY05700 | Canola | cytosol, plastid | 48.98 | 52.92 |
CDY00074 | Canola | cytosol, plastid | 48.79 | 52.72 |
KRH14104 | Soybean | cytosol | 53.45 | 52.66 |
TraesCS2B01G217500.1 | Wheat | cytosol | 53.45 | 51.81 |
PGSC0003DMT400057111 | Potato | nucleus | 51.02 | 51.02 |
Solyc07g065270.1.1 | Tomato | nucleus | 51.02 | 50.93 |
Bra018860.1-P | Field mustard | nucleus | 49.72 | 50.86 |
VIT_00s0463g00020.t01 | Wine grape | nucleus | 50.65 | 49.91 |
PGSC0003DMT400060553 | Potato | cytosol | 48.6 | 49.81 |
PGSC0003DMT400034763 | Potato | cytosol | 48.98 | 49.25 |
KRH73868 | Soybean | cytosol | 49.72 | 48.99 |
KRH14274 | Soybean | cytosol | 49.53 | 48.81 |
KRH01979 | Soybean | cytosol | 49.16 | 48.44 |
Solyc11g012510.1.1 | Tomato | mitochondrion | 48.79 | 48.34 |
KRH51175 | Soybean | cytosol | 48.6 | 48.16 |
KRH11548 | Soybean | nucleus | 49.35 | 48.01 |
KRG98562 | Soybean | nucleus | 48.23 | 47.52 |
KRH46306 | Soybean | cytosol | 48.04 | 47.34 |
KRH36572 | Soybean | cytosol | 48.23 | 47.26 |
Solyc04g014830.1.1 | Tomato | mitochondrion | 48.6 | 47.2 |
Bra021063.1-P | Field mustard | plastid | 45.81 | 46.42 |
CDY58168 | Canola | plastid | 45.81 | 46.42 |
PGSC0003DMT400021748 | Potato | nucleus | 48.23 | 46.33 |
CDY35589 | Canola | cytosol | 45.62 | 46.14 |
AT4G17230.1 | Thale cress | cytosol | 45.25 | 45.94 |
CDY50128 | Canola | cytosol, plastid | 45.44 | 45.78 |
CDY42968 | Canola | cytosol | 45.44 | 45.61 |
Bra026237.1-P | Field mustard | plastid | 45.25 | 45.42 |
AT1G50600.2 | Thale cress | golgi, mitochondrion | 49.91 | 44.59 |
TraesCS2B01G239400.1 | Wheat | cytosol | 44.51 | 41.93 |
KRH38269 | Soybean | cytosol | 27.56 | 41.93 |
TraesCS3B01G441600.1 | Wheat | cytosol | 37.99 | 36.96 |
Solyc05g054170.2.1 | Tomato | mitochondrion, nucleus | 21.23 | 34.23 |
TraesCS1B01G037500.1 | Wheat | cytosol | 19.74 | 25.67 |
TraesCS2B01G413500.1 | Wheat | cytosol | 28.31 | 24.09 |
TraesCS4B01G141200.1 | Wheat | cytosol | 23.28 | 22.05 |
TraesCS4B01G336200.1 | Wheat | cytosol | 23.28 | 21.4 |
TraesCS4B01G140800.1 | Wheat | cytosol | 23.28 | 21.15 |
TraesCS4B01G141400.1 | Wheat | cytosol | 23.84 | 19.36 |
TraesCS4B01G141100.1 | Wheat | cytosol | 22.53 | 19.24 |
TraesCS5B01G494500.1 | Wheat | cytosol | 23.09 | 18.87 |
TraesCS7B01G077800.1 | Wheat | cytosol | 25.14 | 18.37 |
TraesCS4B01G141300.1 | Wheat | cytosol | 22.72 | 18.1 |
TraesCS1B01G037300.1 | Wheat | cytosol | 23.65 | 18.04 |
TraesCS7B01G078300.1 | Wheat | cytosol | 24.77 | 18.02 |
TraesCS1B01G037400.1 | Wheat | cytosol | 23.09 | 17.15 |
TraesCS3B01G081100.1 | Wheat | nucleus | 21.79 | 16.36 |
TraesCS5B01G138100.1 | Wheat | cytosol, plastid | 23.28 | 16.11 |
TraesCS3B01G081000.1 | Wheat | cytosol | 21.79 | 16.07 |
TraesCS3B01G080900.1 | Wheat | nucleus | 21.04 | 15.67 |
TraesCS4B01G141500.1 | Wheat | peroxisome | 23.09 | 15.37 |
TraesCS3B01G392600.1 | Wheat | cytosol | 23.28 | 15.34 |
TraesCS1B01G037200.1 | Wheat | nucleus | 21.6 | 15.32 |
Protein Annotations
EnsemblPlants:TraesCS4B01G266700.1 | EnsemblPlantsGene:TraesCS4B01G266700 | InterPro:CIGR2 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 |
PANTHER:PTHR31636:SF31 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | : |
Description
No Description!
Coordinates
chr4B:-:538997044..539003062
Molecular Weight (calculated)
59583.1 Da
IEP (calculated)
6.278
GRAVY (calculated)
-0.314
Length
537 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAKASNMSY RYPDNSQIPY YSSSMHVGGN GTCYVQQNHE GHHYMSSDDG SQNSDSKSQV IHPQYSTLES SSANCVYAVN SSTSPQCISG SHISLHDSHS
101: DHTYDSPASG ITEVPGLGFT TLQELADALF GSDSDAVSSD RSSLVIGAAM HQSNWRELLG ISSGDLKQVI VACGKAVDEN NCHEELLISE LQKMVSVSGE
201: PMQRLGAYML EGLVARRYST GHALYKSLKC KEPQPTNSEL MSYMHLLYDI CPFFKFGYMS ANGAIAEAVK GENFIHIIDF QIAQGSQWVT MIQALAARAS
301: GPPCLRITGI DDSDSAYARG GGLDIVGRKL YSVAQSCRLP FEFNAVHAAS HEVTLEHLDI RKGEAIAVNF AYQLHHTPDE SVCIENHRDR ILRMVKSLSP
401: SVVTLVEQEA NTNTAPFFSR YMETLDYYTA MFEAIDVACS RDDKKRMSTE QHCVARDIVN LIACEGAERV ERHEPFGKWR SRLAMAGFRP YPLSALVNNT
501: IRTLLNNYNS YYKLEEKDGV IYLGWKNRKL VVSSAWW
101: DHTYDSPASG ITEVPGLGFT TLQELADALF GSDSDAVSSD RSSLVIGAAM HQSNWRELLG ISSGDLKQVI VACGKAVDEN NCHEELLISE LQKMVSVSGE
201: PMQRLGAYML EGLVARRYST GHALYKSLKC KEPQPTNSEL MSYMHLLYDI CPFFKFGYMS ANGAIAEAVK GENFIHIIDF QIAQGSQWVT MIQALAARAS
301: GPPCLRITGI DDSDSAYARG GGLDIVGRKL YSVAQSCRLP FEFNAVHAAS HEVTLEHLDI RKGEAIAVNF AYQLHHTPDE SVCIENHRDR ILRMVKSLSP
401: SVVTLVEQEA NTNTAPFFSR YMETLDYYTA MFEAIDVACS RDDKKRMSTE QHCVARDIVN LIACEGAERV ERHEPFGKWR SRLAMAGFRP YPLSALVNNT
501: IRTLLNNYNS YYKLEEKDGV IYLGWKNRKL VVSSAWW
001: MEATQKHMIQ EGSSMFYHQP SSVKQMDLSV QTFDSYCTLE SSSGTKSHPC LNNKNNSSST TSFSSNESPI SQANNNNLSR FNNHSPEENN NSPLSGSSAT
101: NTNETELSLM LKDLETAMME PDVDNSYNNQ GGFGQQHGVV SSAMYRSMEM ISRGDLKGVL YECAKAVENY DLEMTDWLIS QLQQMVSVSG EPVQRLGAYM
201: LEGLVARLAS SGSSIYKALR CKDPTGPELL TYMHILYEAC PYFKFGYESA NGAIAEAVKN ESFVHIIDFQ ISQGGQWVSL IRALGARPGG PPNVRITGID
301: DPRSSFARQG GLELVGQRLG KLAEMCGVPF EFHGAALCCT EVEIEKLGVR NGEALAVNFP LVLHHMPDES VTVENHRDRL LRLVKHLSPN VVTLVEQEAN
401: TNTAPFLPRF VETMNHYLAV FESIDVKLAR DHKERINVEQ HCLAREVVNL IACEGVEREE RHEPLGKWRS RFHMAGFKPY PLSSYVNATI KGLLESYSEK
501: YTLEERDGAL YLGWKNQPLI TSCAWR
101: NTNETELSLM LKDLETAMME PDVDNSYNNQ GGFGQQHGVV SSAMYRSMEM ISRGDLKGVL YECAKAVENY DLEMTDWLIS QLQQMVSVSG EPVQRLGAYM
201: LEGLVARLAS SGSSIYKALR CKDPTGPELL TYMHILYEAC PYFKFGYESA NGAIAEAVKN ESFVHIIDFQ ISQGGQWVSL IRALGARPGG PPNVRITGID
301: DPRSSFARQG GLELVGQRLG KLAEMCGVPF EFHGAALCCT EVEIEKLGVR NGEALAVNFP LVLHHMPDES VTVENHRDRL LRLVKHLSPN VVTLVEQEAN
401: TNTAPFLPRF VETMNHYLAV FESIDVKLAR DHKERINVEQ HCLAREVVNL IACEGVEREE RHEPLGKWRS RFHMAGFKPY PLSSYVNATI KGLLESYSEK
501: YTLEERDGAL YLGWKNQPLI TSCAWR
Arabidopsis Description
SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.