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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • mitochondrion 2
  • cytosol 2
  • nucleus 1
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G04890.1 TraesCS1A01G308700.1 AT2G41100.1 17360592
AT2G04890.1 TraesCS1A01G308800.1 AT2G41100.1 17360592
AT2G04890.1 TraesCS1B01G319300.1 AT2G41100.1 17360592
AT2G04890.1 TraesCS1D01G308000.1 AT2G41100.1 17360592
AT2G04890.1 TraesCS2B01G113800.2 AT2G41100.1 17360592
AT2G04890.1 TraesCS3A01G184500.1 AT2G41100.1 17360592
AT2G04890.1 TraesCS3A01G191900.1 AT2G41100.1 17360592
AT2G04890.1 TraesCS3A01G335000.1 AT2G41100.1 17360592
AT2G04890.1 TraesCS3B01G219900.1 AT2G41100.1 17360592
AT2G04890.1 TraesCS3B01G365900.1 AT2G41100.1 17360592
AT2G04890.1 TraesCS3D01G188600.1 AT2G41100.1 17360592
AT2G04890.1 TraesCS3D01G194500.2 AT2G41100.1 17360592
AT2G04890.1 TraesCS3D01G328300.1 AT2G41100.1 17360592
AT2G04890.1 TraesCS4B01G131100.1 AT2G41100.1 17360592
AT2G04890.1 TraesCS4D01G126100.1 AT2G41100.1 17360592
AT2G04890.1 TraesCS5A01G057100.1 AT2G41100.1 17360592
AT2G04890.1 TraesCS5A01G057200.1 AT2G41100.1 17360592
AT2G04890.1 TraesCS5A01G139700.1 AT2G41100.1 17360592
AT2G04890.1 TraesCS5B01G059900.1 AT2G41100.1 17360592
AT2G04890.1 TraesCS5B01G137100.1 AT2G41100.1 17360592
AT2G04890.1 TraesCS5D01G068000.1 AT2G41100.1 17360592
AT2G04890.1 TraesCS5D01G068100.1 AT2G41100.1 17360592
AT2G04890.1 TraesCS5D01G153400.1 AT2G41100.1 17360592
AT2G04890.1 TraesCS1A01G308700.1 AT5G21274.1 17360592
AT2G04890.1 TraesCS1A01G308800.1 AT5G21274.1 17360592
AT2G04890.1 TraesCS1B01G319300.1 AT5G21274.1 17360592
AT2G04890.1 TraesCS1D01G308000.1 AT5G21274.1 17360592
AT2G04890.1 TraesCS2B01G113800.2 AT5G21274.1 17360592
AT2G04890.1 TraesCS3A01G184500.1 AT5G21274.1 17360592
AT2G04890.1 TraesCS3A01G191900.1 AT5G21274.1 17360592
AT2G04890.1 TraesCS3A01G335000.1 AT5G21274.1 17360592
AT2G04890.1 TraesCS3B01G219900.1 AT5G21274.1 17360592
AT2G04890.1 TraesCS3B01G365900.1 AT5G21274.1 17360592
AT2G04890.1 TraesCS3D01G188600.1 AT5G21274.1 17360592
AT2G04890.1 TraesCS3D01G194500.2 AT5G21274.1 17360592
AT2G04890.1 TraesCS3D01G328300.1 AT5G21274.1 17360592
AT2G04890.1 TraesCS4B01G131100.1 AT5G21274.1 17360592
AT2G04890.1 TraesCS4D01G126100.1 AT5G21274.1 17360592
AT2G04890.1 TraesCS5A01G057100.1 AT5G21274.1 17360592
AT2G04890.1 TraesCS5A01G057200.1 AT5G21274.1 17360592
AT2G04890.1 TraesCS5A01G139700.1 AT5G21274.1 17360592
AT2G04890.1 TraesCS5B01G059900.1 AT5G21274.1 17360592
AT2G04890.1 TraesCS5B01G137100.1 AT5G21274.1 17360592
AT2G04890.1 TraesCS5D01G068000.1 AT5G21274.1 17360592
AT2G04890.1 TraesCS5D01G068100.1 AT5G21274.1 17360592
AT2G04890.1 TraesCS5D01G153400.1 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4A01G039000.1 Wheat nucleus 87.34 95.91
TraesCS4D01G266400.1 Wheat cytosol 95.16 95.34
HORVU4Hr1G071670.1 Barley cytosol 95.16 95.34
Os03t0193000-01 Rice plastid 79.52 79.81
Zm00001d048199_P001 Maize mitochondrion, nucleus 74.3 74.44
EER95348 Sorghum cytosol 74.3 74.44
Bra026077.1-P Field mustard cytosol 34.64 63.27
GSMUA_Achr4P07010_001 Banana cytosol 37.8 61.89
Bra015156.1-P Field mustard cytosol 36.31 61.32
CDY00883 Canola cytosol 43.76 58.02
GSMUA_Achr4P11050_001 Banana nucleus 42.09 56.93
AT2G04890.1 Thale cress cytosol 43.58 56.66
VIT_12s0057g00560.t01 Wine grape cytosol 56.42 55.6
CDY07309 Canola cytosol 24.77 55.42
GSMUA_AchrUn_... Banana nucleus 44.13 55.37
CDY71156 Canola cytosol, plastid 39.66 54.62
PGSC0003DMT400015696 Potato cytosol 53.63 53.83
Solyc07g047950.1.1 Tomato mitochondrion 54.56 53.76
AT5G48150.4 Thale cress cytosol 48.98 53.67
KRH74015 Soybean cytosol 53.82 53.42
CDY54511 Canola cytosol, nucleus, plastid 49.35 53.32
CDY19966 Canola cytosol 48.98 53.24
VIT_19s0090g01740.t01 Wine grape cytosol 54.0 53.21
CDX86324 Canola cytosol, nucleus, plastid 49.16 53.12
CDY37124 Canola nucleus 41.53 53.1
CDY22807 Canola nucleus 41.53 53.1
Bra036185.1-P Field mustard cytosol 48.79 52.93
CDY71174 Canola cytosol, plastid 48.98 52.92
Bra020715.1-P Field mustard cytosol, plastid 48.98 52.92
CDY05700 Canola cytosol, plastid 48.98 52.92
CDY00074 Canola cytosol, plastid 48.79 52.72
KRH14104 Soybean cytosol 53.45 52.66
TraesCS2B01G217500.1 Wheat cytosol 53.45 51.81
PGSC0003DMT400057111 Potato nucleus 51.02 51.02
Solyc07g065270.1.1 Tomato nucleus 51.02 50.93
Bra018860.1-P Field mustard nucleus 49.72 50.86
VIT_00s0463g00020.t01 Wine grape nucleus 50.65 49.91
PGSC0003DMT400060553 Potato cytosol 48.6 49.81
PGSC0003DMT400034763 Potato cytosol 48.98 49.25
KRH73868 Soybean cytosol 49.72 48.99
KRH14274 Soybean cytosol 49.53 48.81
KRH01979 Soybean cytosol 49.16 48.44
Solyc11g012510.1.1 Tomato mitochondrion 48.79 48.34
KRH51175 Soybean cytosol 48.6 48.16
KRH11548 Soybean nucleus 49.35 48.01
KRG98562 Soybean nucleus 48.23 47.52
KRH46306 Soybean cytosol 48.04 47.34
KRH36572 Soybean cytosol 48.23 47.26
Solyc04g014830.1.1 Tomato mitochondrion 48.6 47.2
Bra021063.1-P Field mustard plastid 45.81 46.42
CDY58168 Canola plastid 45.81 46.42
PGSC0003DMT400021748 Potato nucleus 48.23 46.33
CDY35589 Canola cytosol 45.62 46.14
AT4G17230.1 Thale cress cytosol 45.25 45.94
CDY50128 Canola cytosol, plastid 45.44 45.78
CDY42968 Canola cytosol 45.44 45.61
Bra026237.1-P Field mustard plastid 45.25 45.42
AT1G50600.2 Thale cress golgi, mitochondrion 49.91 44.59
TraesCS2B01G239400.1 Wheat cytosol 44.51 41.93
KRH38269 Soybean cytosol 27.56 41.93
TraesCS3B01G441600.1 Wheat cytosol 37.99 36.96
Solyc05g054170.2.1 Tomato mitochondrion, nucleus 21.23 34.23
TraesCS1B01G037500.1 Wheat cytosol 19.74 25.67
TraesCS2B01G413500.1 Wheat cytosol 28.31 24.09
TraesCS4B01G141200.1 Wheat cytosol 23.28 22.05
TraesCS4B01G336200.1 Wheat cytosol 23.28 21.4
TraesCS4B01G140800.1 Wheat cytosol 23.28 21.15
TraesCS4B01G141400.1 Wheat cytosol 23.84 19.36
TraesCS4B01G141100.1 Wheat cytosol 22.53 19.24
TraesCS5B01G494500.1 Wheat cytosol 23.09 18.87
TraesCS7B01G077800.1 Wheat cytosol 25.14 18.37
TraesCS4B01G141300.1 Wheat cytosol 22.72 18.1
TraesCS1B01G037300.1 Wheat cytosol 23.65 18.04
TraesCS7B01G078300.1 Wheat cytosol 24.77 18.02
TraesCS1B01G037400.1 Wheat cytosol 23.09 17.15
TraesCS3B01G081100.1 Wheat nucleus 21.79 16.36
TraesCS5B01G138100.1 Wheat cytosol, plastid 23.28 16.11
TraesCS3B01G081000.1 Wheat cytosol 21.79 16.07
TraesCS3B01G080900.1 Wheat nucleus 21.04 15.67
TraesCS4B01G141500.1 Wheat peroxisome 23.09 15.37
TraesCS3B01G392600.1 Wheat cytosol 23.28 15.34
TraesCS1B01G037200.1 Wheat nucleus 21.6 15.32
Protein Annotations
EnsemblPlants:TraesCS4B01G266700.1EnsemblPlantsGene:TraesCS4B01G266700InterPro:CIGR2InterPro:IPR005202InterPro:TF_GRASPANTHER:PTHR31636
PANTHER:PTHR31636:SF31PFAM:PF03514PFscan:PS50985SEG:segMapMan:15.5.12:
Description
No Description!
Coordinates
chr4B:-:538997044..539003062
Molecular Weight (calculated)
59583.1 Da
IEP (calculated)
6.278
GRAVY (calculated)
-0.314
Length
537 amino acids
Sequence
(BLAST)
001: MSAKASNMSY RYPDNSQIPY YSSSMHVGGN GTCYVQQNHE GHHYMSSDDG SQNSDSKSQV IHPQYSTLES SSANCVYAVN SSTSPQCISG SHISLHDSHS
101: DHTYDSPASG ITEVPGLGFT TLQELADALF GSDSDAVSSD RSSLVIGAAM HQSNWRELLG ISSGDLKQVI VACGKAVDEN NCHEELLISE LQKMVSVSGE
201: PMQRLGAYML EGLVARRYST GHALYKSLKC KEPQPTNSEL MSYMHLLYDI CPFFKFGYMS ANGAIAEAVK GENFIHIIDF QIAQGSQWVT MIQALAARAS
301: GPPCLRITGI DDSDSAYARG GGLDIVGRKL YSVAQSCRLP FEFNAVHAAS HEVTLEHLDI RKGEAIAVNF AYQLHHTPDE SVCIENHRDR ILRMVKSLSP
401: SVVTLVEQEA NTNTAPFFSR YMETLDYYTA MFEAIDVACS RDDKKRMSTE QHCVARDIVN LIACEGAERV ERHEPFGKWR SRLAMAGFRP YPLSALVNNT
501: IRTLLNNYNS YYKLEEKDGV IYLGWKNRKL VVSSAWW
Best Arabidopsis Sequence Match ( AT1G50600.3 )
(BLAST)
001: MEATQKHMIQ EGSSMFYHQP SSVKQMDLSV QTFDSYCTLE SSSGTKSHPC LNNKNNSSST TSFSSNESPI SQANNNNLSR FNNHSPEENN NSPLSGSSAT
101: NTNETELSLM LKDLETAMME PDVDNSYNNQ GGFGQQHGVV SSAMYRSMEM ISRGDLKGVL YECAKAVENY DLEMTDWLIS QLQQMVSVSG EPVQRLGAYM
201: LEGLVARLAS SGSSIYKALR CKDPTGPELL TYMHILYEAC PYFKFGYESA NGAIAEAVKN ESFVHIIDFQ ISQGGQWVSL IRALGARPGG PPNVRITGID
301: DPRSSFARQG GLELVGQRLG KLAEMCGVPF EFHGAALCCT EVEIEKLGVR NGEALAVNFP LVLHHMPDES VTVENHRDRL LRLVKHLSPN VVTLVEQEAN
401: TNTAPFLPRF VETMNHYLAV FESIDVKLAR DHKERINVEQ HCLAREVVNL IACEGVEREE RHEPLGKWRS RFHMAGFKPY PLSSYVNATI KGLLESYSEK
501: YTLEERDGAL YLGWKNQPLI TSCAWR
Arabidopsis Description
SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.