Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71174 | Canola | cytosol, plastid | 98.59 | 98.59 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 91.35 | 91.35 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 89.94 | 89.94 |
| CDY00074 | Canola | cytosol, plastid | 89.74 | 89.74 |
| CDY19966 | Canola | cytosol | 88.93 | 89.47 |
| AT5G48150.4 | Thale cress | cytosol | 88.13 | 89.39 |
| CDY00883 | Canola | cytosol | 55.33 | 67.9 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 44.47 | 67.38 |
| VIT_12s0057g00560.t01 | Wine grape | cytosol | 70.62 | 64.4 |
| PGSC0003DMT400015696 | Potato | cytosol | 68.81 | 63.93 |
| KRH74015 | Soybean | cytosol | 68.81 | 63.22 |
| KRH14104 | Soybean | cytosol | 69.01 | 62.94 |
| Solyc07g047950.1.1 | Tomato | mitochondrion | 68.41 | 62.39 |
| CDY71156 | Canola | cytosol, plastid | 47.89 | 61.03 |
| CDY07309 | Canola | cytosol | 29.18 | 60.42 |
| TraesCS5A01G414000.1 | Wheat | cytosol | 50.7 | 59.15 |
| CDY37124 | Canola | nucleus | 49.09 | 58.1 |
| CDY22807 | Canola | nucleus | 48.89 | 57.86 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 44.87 | 56.17 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.08 | 54.67 |
| TraesCS5A01G409800.1 | Wheat | nucleus, plastid | 54.53 | 54.09 |
| Zm00001d048199_P001 | Maize | mitochondrion, nucleus | 55.73 | 51.68 |
| Zm00001d030500_P001 | Maize | nucleus | 56.14 | 51.48 |
| Os07t0583600-01 | Rice | plasma membrane | 56.14 | 51.29 |
| Os03t0193000-01 | Rice | plastid | 55.13 | 51.22 |
| EER95348 | Sorghum | cytosol | 54.93 | 50.93 |
| HORVU4Hr1G071670.1 | Barley | cytosol | 54.33 | 50.37 |
| HORVU2Hr1G036280.1 | Barley | cytosol | 56.34 | 50.27 |
| TraesCS5D01G419400.2 | Wheat | cytosol | 55.33 | 50.0 |
| TraesCS4D01G266400.1 | Wheat | cytosol | 53.92 | 50.0 |
| TraesCS2A01G189600.1 | Wheat | cytosol | 55.73 | 50.0 |
| TraesCS2B01G217500.1 | Wheat | cytosol | 55.73 | 50.0 |
| TraesCS2D01G198200.1 | Wheat | cytosol | 55.53 | 49.73 |
| Zm00001d021946_P001 | Maize | cytosol | 55.53 | 49.46 |
| Zm00001d006701_P001 | Maize | cytosol | 55.13 | 49.46 |
| EER97449 | Sorghum | cytosol | 54.33 | 49.36 |
| TraesCS4B01G266700.1 | Wheat | cytosol | 52.92 | 48.98 |
| TraesCS4A01G039000.1 | Wheat | nucleus | 47.48 | 48.26 |
| HORVU5Hr1G099160.1 | Barley | plastid | 55.33 | 43.65 |
| CDY35589 | Canola | cytosol | 46.48 | 43.5 |
| CDY50128 | Canola | cytosol, plastid | 46.28 | 43.15 |
| CDY58168 | Canola | plastid | 45.88 | 43.02 |
| CDY42968 | Canola | cytosol | 45.88 | 42.62 |
| CDY00377 | Canola | cytosol | 42.05 | 38.0 |
| CDY61060 | Canola | cytosol | 40.44 | 37.29 |
| CDY68224 | Canola | cytosol | 42.45 | 36.63 |
| CDY50240 | Canola | cytosol | 42.45 | 36.63 |
| CDY27821 | Canola | cytosol | 28.57 | 31.98 |
| CDY00533 | Canola | cytosol | 28.17 | 31.39 |
| CDX80265 | Canola | endoplasmic reticulum, golgi | 19.92 | 31.23 |
| CDX68389 | Canola | cytosol | 5.03 | 29.41 |
| CDY27063 | Canola | cytosol, plastid | 28.97 | 25.0 |
| CDX91655 | Canola | cytosol | 28.97 | 24.49 |
| CDY71578 | Canola | nucleus, plastid | 25.15 | 23.99 |
| CDY47877 | Canola | nucleus | 26.16 | 21.04 |
| CDY33040 | Canola | nucleus | 25.15 | 20.94 |
| CDY39530 | Canola | cytosol | 25.75 | 20.68 |
| CDY47878 | Canola | nucleus | 27.36 | 19.68 |
| CDX82987 | Canola | nucleus | 23.74 | 19.63 |
| CDY06266 | Canola | cytosol | 24.14 | 18.99 |
| CDX79750 | Canola | peroxisome | 25.55 | 18.84 |
| CDY07777 | Canola | cytosol, nucleus, peroxisome | 25.35 | 18.72 |
| CDX68388 | Canola | cytosol | 15.49 | 18.6 |
| CDX86475 | Canola | nucleus | 26.56 | 18.59 |
| CDY31749 | Canola | cytosol | 26.96 | 18.46 |
| CDX77228 | Canola | cytosol | 24.95 | 18.45 |
| CDY06265 | Canola | cytosol | 24.55 | 17.68 |
| CDY09912 | Canola | cytosol | 24.14 | 17.14 |
| CDY15616 | Canola | nucleus | 24.55 | 17.06 |
| CDY09911 | Canola | nucleus | 17.1 | 14.55 |
Protein Annotations
| EnsemblPlants:CDY05700 | EnsemblPlantsGene:GSBRNA2T00120716001 | GO:A0A078EUH9 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF57 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:CDY05700 | ProteinID:CDY05700.1 | SEG:seg |
| UniParc:UPI0004EC7574 | MapMan:15.5.12 | : | : | : | : |
Description
BnaC02g38370D
Coordinates
chrLK031963:+:1049058..1051590
Molecular Weight (calculated)
55754.3 Da
IEP (calculated)
6.786
GRAVY (calculated)
-0.345
Length
497 amino acids
Sequence
(BLAST)
(BLAST)
001: MYKHPRQEIE AYSLPANSVG KRRYVPVHNS RKRYCTPESS SPDSPAHDVI SNATVLVSHN NSAYEDTSGS CVTDDFNDKI KELETVMMGP DSLDLVLDYN
101: DSFDSTSCQE TNSWRSTLEA VSRRDLRADL VSCAKAMSEN DLMMARSMME KLRLMVSVSG EPIERLGAYL LEGLVAQLSS SGSSIYKSLN QCPEPASTDL
201: LSYMHILYEV CPYFKFGYMS ANGAIAEAMK EENRVHIIDF QIGQGSQWVT LIQAFAARPG GPPRIRITGI DDTTSAYARG GGLSIVGNRL AKLAKQFNVP
301: FEFNSVSVSV SEVKPKNLGV RPGEALAVNF AFVLHHMPDE SVSTENHRDR LLRMVKSLSP KVVTLVEQES NTNTAAFFPR FKETMDYYDA MFESIDVTLP
401: RNHKQRINVE QHCLARDVVN IIACEGADRV ERHELLGKWR SRFGMAGFTP YPLSPLVNST IRSLLRNYSD KYRLEERDGA LYLGWMKRDL VASCAWK
101: DSFDSTSCQE TNSWRSTLEA VSRRDLRADL VSCAKAMSEN DLMMARSMME KLRLMVSVSG EPIERLGAYL LEGLVAQLSS SGSSIYKSLN QCPEPASTDL
201: LSYMHILYEV CPYFKFGYMS ANGAIAEAMK EENRVHIIDF QIGQGSQWVT LIQAFAARPG GPPRIRITGI DDTTSAYARG GGLSIVGNRL AKLAKQFNVP
301: FEFNSVSVSV SEVKPKNLGV RPGEALAVNF AFVLHHMPDE SVSTENHRDR LLRMVKSLSP KVVTLVEQES NTNTAAFFPR FKETMDYYDA MFESIDVTLP
401: RNHKQRINVE QHCLARDVVN IIACEGADRV ERHELLGKWR SRFGMAGFTP YPLSPLVNST IRSLLRNYSD KYRLEERDGA LYLGWMKRDL VASCAWK
001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK
Arabidopsis Description
PAT1Scarecrow-like transcription factor PAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDL7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.