Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50240 | Canola | cytosol | 97.92 | 97.92 |
| CDY00377 | Canola | cytosol | 83.16 | 87.09 |
| CDY61060 | Canola | cytosol | 79.86 | 85.34 |
| AT1G21450.1 | Thale cress | nucleus | 85.76 | 83.31 |
| GSMUA_Achr6P11780_001 | Banana | cytosol | 41.49 | 69.88 |
| KRH15917 | Soybean | cytosol | 62.5 | 60.91 |
| KRH18097 | Soybean | cytosol | 62.33 | 60.74 |
| KRH64568 | Soybean | cytosol | 62.15 | 60.07 |
| KRH53364 | Soybean | cytosol | 61.98 | 59.5 |
| PGSC0003DMT400063944 | Potato | cytosol, mitochondrion | 56.08 | 57.78 |
| Solyc04g064550.1.1 | Tomato | mitochondrion | 56.42 | 57.73 |
| VIT_04s0044g01370.t01 | Wine grape | nucleus | 56.6 | 57.39 |
| GSMUA_Achr10P... | Banana | cytosol | 54.34 | 56.7 |
| Os01t0881500-01 | Rice | cytosol | 50.87 | 52.98 |
| GSMUA_Achr3P02410_001 | Banana | nucleus | 53.65 | 52.64 |
| TraesCS3B01G441600.1 | Wheat | cytosol | 50.0 | 52.17 |
| HORVU3Hr1G091250.1 | Barley | cytosol | 50.0 | 52.17 |
| TraesCS3D01G403100.1 | Wheat | cytosol | 50.0 | 52.17 |
| TraesCS3A01G408000.1 | Wheat | cytosol | 49.83 | 51.99 |
| KXG33821 | Sorghum | cytosol | 50.87 | 51.49 |
| EES18257 | Sorghum | cytosol | 48.96 | 50.09 |
| Zm00001d038225_P001 | Maize | cytosol | 47.4 | 48.66 |
| CDY00883 | Canola | cytosol | 32.12 | 45.68 |
| CDY71156 | Canola | cytosol, plastid | 29.34 | 43.33 |
| CDY07309 | Canola | cytosol | 17.71 | 42.5 |
| CDY71174 | Canola | cytosol, plastid | 36.63 | 42.45 |
| CDY05700 | Canola | cytosol, plastid | 36.63 | 42.45 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 36.46 | 42.25 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 36.28 | 42.05 |
| CDY22807 | Canola | nucleus | 30.56 | 41.9 |
| CDY37124 | Canola | nucleus | 30.56 | 41.9 |
| CDY00074 | Canola | cytosol, plastid | 36.11 | 41.85 |
| CDY19966 | Canola | cytosol | 35.76 | 41.7 |
| CDY35589 | Canola | cytosol | 35.76 | 38.79 |
| CDY42968 | Canola | cytosol | 35.59 | 38.32 |
| CDY58168 | Canola | plastid | 34.72 | 37.74 |
| CDY50128 | Canola | cytosol, plastid | 34.9 | 37.71 |
| CDY27821 | Canola | cytosol | 26.74 | 34.68 |
| CDY00533 | Canola | cytosol | 26.74 | 34.53 |
| CDY27063 | Canola | cytosol, plastid | 27.6 | 27.6 |
| CDX80265 | Canola | endoplasmic reticulum, golgi | 15.1 | 27.44 |
| CDX91655 | Canola | cytosol | 27.43 | 26.87 |
| CDX68389 | Canola | cytosol | 3.82 | 25.88 |
| CDY39530 | Canola | cytosol | 22.74 | 21.16 |
| CDY47877 | Canola | nucleus | 22.57 | 21.04 |
| CDY71578 | Canola | nucleus, plastid | 18.92 | 20.92 |
| CDY06266 | Canola | cytosol | 21.7 | 19.78 |
| CDY33040 | Canola | nucleus | 20.31 | 19.6 |
| CDX79750 | Canola | peroxisome | 22.57 | 19.29 |
| CDY07777 | Canola | cytosol, nucleus, peroxisome | 22.4 | 19.17 |
| CDX86475 | Canola | nucleus | 23.26 | 18.87 |
| CDY47878 | Canola | nucleus | 22.05 | 18.38 |
| CDY06265 | Canola | cytosol | 21.53 | 17.97 |
| CDX82987 | Canola | nucleus | 18.75 | 17.97 |
| CDY09912 | Canola | cytosol | 21.7 | 17.86 |
| CDY31749 | Canola | cytosol | 22.4 | 17.77 |
| CDY15616 | Canola | nucleus | 21.88 | 17.62 |
| CDX77228 | Canola | cytosol | 20.14 | 17.26 |
| CDY09911 | Canola | nucleus | 16.67 | 16.44 |
| CDX68388 | Canola | cytosol | 11.46 | 15.94 |
Protein Annotations
| MapMan:15.5.12 | GO:A0A078JN45 | UniProt:A0A078JN45 | EnsemblPlants:CDY68224 | ProteinID:CDY68224 | ProteinID:CDY68224.1 |
| ncoils:Coil | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00072040001 | InterPro:IPR005202 | PFAM:PF03514 | PFscan:PS50985 |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF10 | InterPro:Scarecrow-like_1 | InterPro:TF_GRAS | UniParc:UPI0004EF2386 | SEG:seg |
Description
BnaCnng58110DBnaCnng58110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JN45]
Coordinates
chrLK037009:+:1728..4226
Molecular Weight (calculated)
64398.2 Da
IEP (calculated)
4.714
GRAVY (calculated)
-0.403
Length
576 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLVRSAELS AAAAAYRNPK LYSLNENGYN TGGGTSVEMF DPDRSKNTCL TDDSYPSQNY EKYFLDSPTD EFAQQQHPVG SGGASVSSFG SLESFPYQSR
101: PVLGCSMEYQ LPFDSTSTSS MSLFGGYQVA TQSPSMEFDD EQMRSKIQEL ERALLDDEDD DDKMVGIDQL MEIDNEWSPK ESSSEDSNSH ASSKEVISQA
201: TTTPKQILIS CARALSQGKS EEALSMVNEL RQIVSIQGDP SQRIAAYMVE GLAARMAASG KFLYKALKCK EPPSDERLAA MQVLFEVCPC FKFGFLAAND
301: AIIDSIRDEK EVHIIDFDIN QGNQYMTLIK TVASLPVKGR PRLRLTGVDD PESVQRSVGG LRIIGLRLEQ LAKDHGVSFE FKAVASKTNI VSPSTLGCKP
401: GEALIVNFAF QLHHMPDESV TTVNQRDELL HMVKSLNPKL VTVVEQDVNT NTSPFFPRFM EAYEYYSAVF DSLDMTLPRE SQERMNVERQ CLARDIVNIV
501: ACEGEERIER YEVAGKWRAR MMMAGFSPRP MSGRVTSNIQ SLIKRDYCSK YKVKEEMGEL HFCWEEKSLI VASAWR
101: PVLGCSMEYQ LPFDSTSTSS MSLFGGYQVA TQSPSMEFDD EQMRSKIQEL ERALLDDEDD DDKMVGIDQL MEIDNEWSPK ESSSEDSNSH ASSKEVISQA
201: TTTPKQILIS CARALSQGKS EEALSMVNEL RQIVSIQGDP SQRIAAYMVE GLAARMAASG KFLYKALKCK EPPSDERLAA MQVLFEVCPC FKFGFLAAND
301: AIIDSIRDEK EVHIIDFDIN QGNQYMTLIK TVASLPVKGR PRLRLTGVDD PESVQRSVGG LRIIGLRLEQ LAKDHGVSFE FKAVASKTNI VSPSTLGCKP
401: GEALIVNFAF QLHHMPDESV TTVNQRDELL HMVKSLNPKL VTVVEQDVNT NTSPFFPRFM EAYEYYSAVF DSLDMTLPRE SQERMNVERQ CLARDIVNIV
501: ACEGEERIER YEVAGKWRAR MMMAGFSPRP MSGRVTSNIQ SLIKRDYCSK YKVKEEMGEL HFCWEEKSLI VASAWR
001: MVEQTVVREH IKARVMSLVR SAEPSSYRNP KLYTLNENGN NNGVSSAQIF DPDRSKNPCL TDDSYPSQSY EKYFLDSPTD EFVQHPIGSG ASVSSFGSLD
101: SFPYQSRPVL GCSMEFQLPL DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIQE LERALLGDED DKMVGIDNLM EIDSEWSYQN ESEQHQDSPK
201: ESSSADSNSH VSSKEVVSQA TPKQILISCA RALSEGKLEE ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ
301: VLFEVCPCFK FGFLAANGAI LEAIKGEEEV HIIDFDINQG NQYMTLIRSI AELPGKRPRL RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA
401: MPSKTSIVSP STLGCKPGET LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY EYYSAVFESL DMTLPRESQE
501: RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM AGFNPKPMSA KVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR
101: SFPYQSRPVL GCSMEFQLPL DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIQE LERALLGDED DKMVGIDNLM EIDSEWSYQN ESEQHQDSPK
201: ESSSADSNSH VSSKEVVSQA TPKQILISCA RALSEGKLEE ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ
301: VLFEVCPCFK FGFLAANGAI LEAIKGEEEV HIIDFDINQG NQYMTLIRSI AELPGKRPRL RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA
401: MPSKTSIVSP STLGCKPGET LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY EYYSAVFESL DMTLPRESQE
501: RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM AGFNPKPMSA KVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR
Arabidopsis Description
SCL1Scarecrow-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.