CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15917	Soybean	cytosol	95.94	95.94
KRH53364	Soybean	cytosol	78.68	77.5
KRH64568	Soybean	cytosol	78.0	77.35
GSMUA_Achr6P11780_001	Banana	cytosol	42.64	73.68
Bra017915.1-P	Field mustard	cytoskeleton, cytosol, nucleus, plastid	50.08	72.55
VIT_18s0001g15270.t01	Wine grape	cytosol, plastid	64.3	67.26
CDY61060	Canola	cytosol	58.04	63.64
CDY00377	Canola	cytosol	58.21	62.55
CDY68224	Canola	cytosol	60.74	62.33
Bra012280.1-P	Field mustard	cytosol	57.7	62.11
CDY50240	Canola	cytosol	60.41	61.98
PGSC0003DMT400063944	Potato	cytosol, mitochondrion	58.04	61.36
Solyc04g064550.1.1	Tomato	mitochondrion	58.21	61.1
GSMUA_Achr10P...	Banana	cytosol	57.02	61.05
AT1G21450.1	Thale cress	nucleus	60.91	60.71
GSMUA_Achr3P02410_001	Banana	nucleus	57.19	57.58
Os01t0881500-01	Rice	cytosol	51.78	55.33
HORVU3Hr1G091250.1	Barley	cytosol	51.61	55.25
TraesCS3D01G403100.1	Wheat	cytosol	51.61	55.25
TraesCS3B01G441600.1	Wheat	cytosol	51.61	55.25
TraesCS3A01G408000.1	Wheat	cytosol	51.61	55.25
KXG33821	Sorghum	cytosol	52.28	54.31
EES18257	Sorghum	cytosol	50.93	53.46
Zm00001d038225_P001	Maize	cytosol	48.05	50.62
KRH74015	Soybean	cytosol	40.27	43.99
KRH14104	Soybean	cytosol	40.27	43.67
KRH36572	Soybean	cytosol	36.89	39.78
KRH11548	Soybean	nucleus	37.06	39.67
KRH22210	Soybean	cytosol, plastid	38.24	39.17
KRH55599	Soybean	plastid	37.39	38.91
KRH73868	Soybean	cytosol	35.87	38.9
KRH27129	Soybean	plastid	36.89	38.86
KRH51175	Soybean	cytosol	35.36	38.56
KRH25905	Soybean	cytosol, plastid	36.89	38.38
KRG98562	Soybean	nucleus	35.36	38.35
KRH14274	Soybean	cytosol	35.19	38.17
KRH46306	Soybean	cytosol	35.19	38.17
KRH01979	Soybean	cytosol	34.86	37.8
KRH38269	Soybean	cytosol	18.95	31.73
KRG91573	Soybean	plastid	30.29	30.13
KRH35251	Soybean	plastid	29.78	29.83
KRH08880	Soybean	plastid	28.93	26.03
KRH38397	Soybean	plastid	23.69	25.93
KRH24780	Soybean	cytosol	23.35	20.91
KRH10243	Soybean	nucleus	23.35	20.75
KRH10240	Soybean	cytosol	20.98	20.46
KRH23089	Soybean	cytosol	22.0	20.19
KRH29771	Soybean	cytosol	23.18	20.15
KRH29773	Soybean	cytosol	20.81	20.03
KRH29774	Soybean	cytosol	21.32	19.97
KRH23094	Soybean	cytosol	18.61	19.89
KRH23090	Soybean	vacuole	20.81	19.81
KRH29775	Soybean	nucleus	22.5	19.76
KRH24775	Soybean	cytosol	22.5	19.56
KRH24773	Soybean	nucleus	22.67	19.51
KRH23095	Soybean	cytosol	21.49	19.33
KRH24778	Soybean	nucleus	21.49	18.79
KRH29779	Soybean	cytosol	23.35	18.6
KRH49113	Soybean	cytosol	23.01	18.53
KRG99969	Soybean	cytosol	22.84	18.32
KRH23091	Soybean	endoplasmic reticulum, plasma membrane	22.84	18.17
KRH10241	Soybean	cytosol, nucleus, peroxisome	20.98	18.02
KRH65839	Soybean	cytosol, plastid	22.0	17.81

Protein Annotations

EntrezGene:100807048	MapMan:15.5.12	EMBL:ACUP02008029	EnsemblPlantsGene:GLYMA_13G037100	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:I1LXB0	InterPro:IPR005202	EnsemblPlants:KRH18097
ProteinID:KRH18097	ProteinID:KRH18097.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF10
InterPro:Scarecrow-like_1	InterPro:TF_GRAS	UniParc:UPI000233BA93	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr13:+:11622743..11626638

Molecular Weight (calculated)

66022.8 Da

IEP (calculated)

4.717

GRAVY (calculated)

-0.422

Length

591 amino acids

Sequence
(BLAST)

001: MSLVISTELA DTSYGNAKLY TLKGTDVTPD LSSHNFAPDK HRNMYMTKSY SCESYEKYFH DSPTEELIEP SSSSISGNSV HPDGASSYLL RASSGASVIV
101: NNPFDTSIWS TRHRDAYQSN SVSDFVENGS PDGLDFDGEM RLKLQELERA LLSDEEEEEQ GIFETVQSME IDPDMVEWAN PLQDMLLHDS PKESSSSDSS
201: NLSSISSTTK DTSQNSPQTP KQLLYDCARI LSEGNEQEAT SMINKLRQMV SIQGDPSQRI AAYMVEGLAA RVATSGKCIY QALRCKEPPS NDRLAAMQIL
301: FEVCPCFKFG YIAANGAIAE AVRDEKKVHI IDFDISQGTQ YITLIQTLAS MPGRPPHVRL TGVDDPESVQ RSIGGINIIG QRLEKLAEEL GLPFEFRAVA
401: SGTSNVTQSM LDCRPGEALV VNFAFQLHHM RDETVSTVNE RDQLLRMVKS LNPKLVTVVE QDMNTNTSPF LPRFVEAYNY YSAVFNTLDA TLPRESQDRM
501: NVERQCLAKD IVNIVACEGE ERIERYEVAG KWRARLSMAG FTPSPMSTNV REAIRKLIIK QYCDKFKIKE EMGGLHFGWE DKNLIVASAW K

Best Arabidopsis Sequence Match ( AT1G21450.1 )
(BLAST)

001: MVEQTVVREH IKARVMSLVR SAEPSSYRNP KLYTLNENGN NNGVSSAQIF DPDRSKNPCL TDDSYPSQSY EKYFLDSPTD EFVQHPIGSG ASVSSFGSLD
101: SFPYQSRPVL GCSMEFQLPL DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIQE LERALLGDED DKMVGIDNLM EIDSEWSYQN ESEQHQDSPK
201: ESSSADSNSH VSSKEVVSQA TPKQILISCA RALSEGKLEE ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ
301: VLFEVCPCFK FGFLAANGAI LEAIKGEEEV HIIDFDINQG NQYMTLIRSI AELPGKRPRL RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA
401: MPSKTSIVSP STLGCKPGET LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY EYYSAVFESL DMTLPRESQE
501: RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM AGFNPKPMSA KVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR

Arabidopsis Description

SCL1Scarecrow-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.