Factsheet for GSMUA_Achr6P11780_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017915.1-P	Field mustard	cytoskeleton, cytosol, nucleus, plastid	69.3	58.09
GSMUA_Achr10P...	Banana	cytosol	88.6	54.89
GSMUA_Achr8P03610_001	Banana	cytosol	23.1	54.86
GSMUA_Achr3P02410_001	Banana	nucleus	85.96	50.09
VIT_04s0044g01370.t01	Wine grape	nucleus	75.44	45.42
Os01t0881500-01	Rice	cytosol	72.81	45.03
TraesCS3A01G408000.1	Wheat	cytosol	71.93	44.57
TraesCS3B01G441600.1	Wheat	cytosol	71.93	44.57
TraesCS3D01G403100.1	Wheat	cytosol	71.93	44.57
PGSC0003DMT400063944	Potato	cytosol, mitochondrion	72.51	44.36
HORVU3Hr1G091250.1	Barley	cytosol	71.34	44.2
VIT_18s0001g15270.t01	Wine grape	cytosol, plastid	72.51	43.89
Solyc04g064550.1.1	Tomato	mitochondrion	72.22	43.87
CDY61060	Canola	cytosol	69.01	43.78
KXG33821	Sorghum	cytosol	72.51	43.59
KRH64568	Soybean	cytosol	75.73	43.46
Bra012280.1-P	Field mustard	cytosol	69.59	43.35
EES18257	Sorghum	cytosol	71.34	43.34
KRH53364	Soybean	cytosol	75.73	43.17
CDY00377	Canola	cytosol	68.71	42.73
KRH18097	Soybean	cytosol	73.68	42.64
KRH15917	Soybean	cytosol	72.81	42.13
Zm00001d038225_P001	Maize	cytosol	69.01	42.07
GSMUA_Achr4P07010_001	Banana	cytosol	40.06	41.77
CDY68224	Canola	cytosol	69.88	41.49
CDY50240	Canola	cytosol	69.59	41.32
AT1G21450.1	Thale cress	nucleus	66.96	38.62
GSMUA_Achr4P11050_001	Banana	nucleus	40.35	34.76
GSMUA_Achr6P24310_001	Banana	cytosol	51.17	32.71
GSMUA_AchrUn_...	Banana	nucleus	40.06	32.01
GSMUA_Achr9P12070_001	Banana	mitochondrion, plastid	40.94	26.92
GSMUA_Achr5P12810_001	Banana	cytosol, plastid	42.98	26.16
GSMUA_AchrUn_...	Banana	plastid	44.15	25.81
GSMUA_Achr4P26400_001	Banana	cytosol, mitochondrion, plastid	43.27	25.34
GSMUA_Achr9P18770_001	Banana	cytosol	41.23	24.78
GSMUA_Achr1P03650_001	Banana	mitochondrion	40.64	24.39
GSMUA_Achr9P24710_001	Banana	endoplasmic reticulum, plastid	38.3	22.47
GSMUA_Achr4P24960_001	Banana	cytosol	29.53	20.82
GSMUA_Achr5P08320_001	Banana	cytosol	21.64	16.48
GSMUA_Achr10P...	Banana	cytosol	26.32	15.03
GSMUA_Achr10P...	Banana	nucleus	19.3	14.93
GSMUA_Achr6P34090_001	Banana	nucleus	25.73	14.38
GSMUA_Achr7P15080_001	Banana	cytosol	24.85	14.21
GSMUA_Achr8P02550_001	Banana	nucleus	14.62	12.76
GSMUA_AchrUn_...	Banana	cytosol	20.76	10.77

Protein Annotations

EnsemblPlants:GSMUA_Achr6P11780_001	EnsemblPlants:GSMUA_Achr6T11780_001	EnsemblPlantsGene:GSMUA_Achr6G11780_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:Scarecrow-like_1
InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF10	PFAM:PF03514	PFscan:PS50985	UniParc:UPI00029497EC
UniProt:M0T676	MapMan:15.5.12	:	:	:	:

Description

Scarecrow-like protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G11780_001]

Coordinates

chr6:-:7807413..7809116

Molecular Weight (calculated)

38340.1 Da

IEP (calculated)

5.490

GRAVY (calculated)

-0.147

Length

342 amino acids

Sequence
(BLAST)

001: MVSIQGDPPQ RLSAYMVEGL AARIASSGRG LYKALKCKEP PTSDQLSAMQ ILFEVCPCFK FGYMAANYII IEAFRDEEKV HIIDFDLNQG SQYINLIQTL
101: STWPHKPPHL RISAVDDPES VQRAVGGLEI IGRRLEKLAE ELGVPFEFSA IAVKSGDVTP GMLDRRLGEA LVVNFAFQLH HMPDESVSTV NQRDELLRMV
201: KGLGPKLVTV VEQDMNTNTA PFLPRFMEVY NYYSAVFDSL DATLPRDSSD RMNVERQCLA RDIVNIVACE GADRIERYEV AGKWRARMTM AGFVSCPFGT
301: NVNGLVRALS GSYCDRYKIK EESGALYFGW EDKTLVVTSA WR

Best Arabidopsis Sequence Match ( AT1G21450.1 )
(BLAST)

001: MVEQTVVREH IKARVMSLVR SAEPSSYRNP KLYTLNENGN NNGVSSAQIF DPDRSKNPCL TDDSYPSQSY EKYFLDSPTD EFVQHPIGSG ASVSSFGSLD
101: SFPYQSRPVL GCSMEFQLPL DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIQE LERALLGDED DKMVGIDNLM EIDSEWSYQN ESEQHQDSPK
201: ESSSADSNSH VSSKEVVSQA TPKQILISCA RALSEGKLEE ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ
301: VLFEVCPCFK FGFLAANGAI LEAIKGEEEV HIIDFDINQG NQYMTLIRSI AELPGKRPRL RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA
401: MPSKTSIVSP STLGCKPGET LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY EYYSAVFESL DMTLPRESQE
501: RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM AGFNPKPMSA KVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR

Arabidopsis Description

SCL1Scarecrow-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.