Factsheet for TraesCS3D01G403100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G441600.1	Wheat	cytosol	99.09	99.09
TraesCS3A01G408000.1	Wheat	cytosol	98.73	98.73
HORVU3Hr1G091250.1	Barley	cytosol	98.01	98.01
Os01t0881500-01	Rice	cytosol	87.86	87.7
KXG33821	Sorghum	cytosol	87.32	84.71
GSMUA_Achr6P11780_001	Banana	cytosol	44.57	71.93
Zm00001d038225_P001	Maize	cytosol	70.65	69.52
Bra017915.1-P	Field mustard	cytoskeleton, cytosol, nucleus, plastid	45.65	61.76
GSMUA_Achr10P...	Banana	cytosol	60.87	60.87
GSMUA_Achr3P02410_001	Banana	nucleus	59.24	55.71
VIT_04s0044g01370.t01	Wine grape	nucleus	57.25	55.63
VIT_18s0001g15270.t01	Wine grape	cytosol, plastid	56.16	54.87
KRH64568	Soybean	cytosol	56.52	52.35
KRH18097	Soybean	cytosol	55.25	51.61
KRH53364	Soybean	cytosol	55.98	51.5
Solyc04g064550.1.1	Tomato	mitochondrion	52.17	51.15
PGSC0003DMT400063944	Potato	cytosol, mitochondrion	51.63	50.98
CDY61060	Canola	cytosol	49.46	50.65
KRH15917	Soybean	cytosol	54.17	50.59
CDY00377	Canola	cytosol	50.36	50.55
CDY50240	Canola	cytosol	52.72	50.52
CDY68224	Canola	cytosol	52.17	50.0
Bra012280.1-P	Field mustard	cytosol	49.46	49.73
AT1G21450.1	Thale cress	nucleus	51.63	48.06
TraesCS4D01G266400.1	Wheat	cytosol	37.5	38.62
TraesCS2D01G198200.1	Wheat	cytosol	38.41	38.2
TraesCS5D01G419400.2	Wheat	cytosol	38.04	38.18
TraesCS2D01G220200.1	Wheat	cytosol	37.68	36.49
TraesCS2D01G393200.1	Wheat	cytosol	30.62	26.95
TraesCS4D01G136100.1	Wheat	cytosol	23.37	22.09
TraesCS4D01G136200.1	Wheat	cytosol	23.37	21.22
TraesCS7D01G174100.1	Wheat	cytosol	25.91	20.37
TraesCS4D01G135900.1	Wheat	cytosol	23.01	19.91
TraesCS5D01G092000.1	Wheat	cytosol	21.74	19.48
TraesCS7D01G174300.1	Wheat	cytosol	25.54	19.34
TraesCS4D01G136000.1	Wheat	cytosol	22.64	19.26
TraesCS4D01G135500.1	Wheat	cytosol	21.92	18.73
TraesCS3D01G067900.1	Wheat	nucleus	23.37	18.7
TraesCS4D01G136400.1	Wheat	mitochondrion	24.09	18.68
TraesCS4D01G136300.1	Wheat	cytosol	22.46	18.4
TraesCS4D01G332000.1	Wheat	cytosol	21.92	17.93
TraesCS5D01G494900.1	Wheat	cytosol	20.83	17.5
TraesCS1D01G031000.1	Wheat	cytosol	22.83	17.38
TraesCS3D01G067800.1	Wheat	nucleus	21.2	17.31
TraesCS1D01G030800.1	Wheat	cytosol	21.92	17.26
TraesCS1D01G031200.1	Wheat	cytosol	22.46	17.01
TraesCS1D01G030900.1	Wheat	cytosol	21.74	16.83
TraesCS3D01G067700.1	Wheat	cytosol	21.92	16.76
TraesCS5D01G152700.1	Wheat	cytosol, plastid	23.01	16.41
TraesCS4D01G136500.1	Wheat	peroxisome	21.01	15.12
TraesCS3D01G354100.1	Wheat	cytosol, extracellular, nucleus	21.74	14.67

Protein Annotations

EnsemblPlants:TraesCS3D01G403100.1	EnsemblPlantsGene:TraesCS3D01G403100	InterPro:IPR005202	InterPro:Scarecrow-like_1	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF10	PFAM:PF03514	PFscan:PS50985	SEG:seg	MapMan:15.5.12	:

Description

No Description!

Coordinates

chr3D:+:517275032..517276979

Molecular Weight (calculated)

61442.3 Da

IEP (calculated)

4.481

GRAVY (calculated)

-0.296

Length

552 amino acids

Sequence
(BLAST)

001: MSFVGRVDPS TTYADNIYVH KFGAPNSNFA ARRFGSDTQL FRYGPEPFNS EDYGHMGFPE APSAAFQNSF YNQQASLTPC SDAEKDSPVF SNVSQQNSQS
101: ISDNQSSGLE VEFDDEIRLK LQELEHALLD DGDDILFEIS QAGCISDEWA DPMKDVLLAT SPKESESSIS CAGSNSGEAR TPKQLLFDCA TALAEYNVDE
201: AQAIITDLRQ MVSIQGDPSH RIAAYLVEGL AARIVASGTG IYKALTCKDP PTLYQLSAMQ ILFEICPCYR FGFMAANYAI LEACKGEERM HIIDFDINQG
301: SQYITLMQFM KDDANKPRHL RITGVDDHET VQRTVGGLKV IGQRLEKLAE DCGISFEFRA VGADIGDVTP AMLDCRPGEA LVVNFAFQLH HLPDESVSIM
401: NERDQLLRMV KGLQPKLVTL VEQDANTNTA PFQTRFREVY DYYSALFDSL DATLPRESPD RMNVERQCLA REIVNILACE GPDRVERYEV AGKWRARMTM
501: AGFAPCPFSS NVIGGIRSLL SSYCDRYKFE EDHGGLHFGW GEKTLIVASA WQ

Best Arabidopsis Sequence Match ( AT1G21450.1 )
(BLAST)

001: MVEQTVVREH IKARVMSLVR SAEPSSYRNP KLYTLNENGN NNGVSSAQIF DPDRSKNPCL TDDSYPSQSY EKYFLDSPTD EFVQHPIGSG ASVSSFGSLD
101: SFPYQSRPVL GCSMEFQLPL DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIQE LERALLGDED DKMVGIDNLM EIDSEWSYQN ESEQHQDSPK
201: ESSSADSNSH VSSKEVVSQA TPKQILISCA RALSEGKLEE ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ
301: VLFEVCPCFK FGFLAANGAI LEAIKGEEEV HIIDFDINQG NQYMTLIRSI AELPGKRPRL RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA
401: MPSKTSIVSP STLGCKPGET LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY EYYSAVFESL DMTLPRESQE
501: RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM AGFNPKPMSA KVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR

Arabidopsis Description

SCL1Scarecrow-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.