Factsheet for VIT_18s0001g15270.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P11780_001	Banana	cytosol	43.89	72.51
KRH53364	Soybean	cytosol	68.32	64.33
KRH18097	Soybean	cytosol	67.26	64.3
KRH64568	Soybean	cytosol	67.79	64.26
GSMUA_Achr10P...	Banana	cytosol	62.12	63.59
PGSC0003DMT400063944	Potato	cytosol, mitochondrion	62.65	63.33
KRH15917	Soybean	cytosol	66.19	63.28
VIT_04s0044g01370.t01	Wine grape	nucleus	63.36	63.03
Solyc04g064550.1.1	Tomato	mitochondrion	62.48	62.7
GSMUA_Achr3P02410_001	Banana	nucleus	60.0	57.75
Os01t0881500-01	Rice	cytosol	55.75	56.96
TraesCS3A01G408000.1	Wheat	cytosol	55.04	56.34
TraesCS3B01G441600.1	Wheat	cytosol	55.04	56.34
TraesCS3D01G403100.1	Wheat	cytosol	54.87	56.16
HORVU3Hr1G091250.1	Barley	cytosol	54.87	56.16
EES18257	Sorghum	cytosol	54.51	54.71
KXG33821	Sorghum	cytosol	55.04	54.66
Zm00001d038225_P001	Maize	cytosol	51.15	51.52
VIT_12s0057g00560.t01	Wine grape	cytosol	42.48	44.04
VIT_19s0090g01740.t01	Wine grape	cytosol	41.06	42.57
VIT_00s0463g00020.t01	Wine grape	nucleus	37.35	38.72
VIT_19s0014g04940.t01	Wine grape	cytosol	38.41	37.22
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	33.81	32.43
VIT_06s0004g04990.t01	Wine grape	cytosol	20.89	26.7
VIT_13s0019g01780.t01	Wine grape	nucleus	21.95	20.67
VIT_06s0004g04970.t01	Wine grape	cytosol	23.01	19.76
VIT_06s0004g04980.t01	Wine grape	nucleus	23.89	19.18
VIT_13s0019g01810.t01	Wine grape	cytosol	25.13	18.98
VIT_13s0019g01790.t01	Wine grape	cytosol	23.36	18.36
VIT_08s0007g00510.t01	Wine grape	cytosol, plastid	23.01	18.34
VIT_13s0019g01710.t01	Wine grape	cytosol	23.36	18.16
VIT_06s0004g04950.t01	Wine grape	cytosol	23.72	17.77
VIT_13s0019g01700.t01	Wine grape	cytosol	23.89	17.76
VIT_06s0004g04960.t01	Wine grape	nucleus	22.48	15.93

Protein Annotations

EntrezGene:100253954	wikigene:100253954	MapMan:15.5.12	EMBL:AM441545	EMBL:AM486698	ProteinID:CAN65092
ProteinID:CAN65092.1	ProteinID:CAN77733	ProteinID:CAN77733.1	ProteinID:CCB46092	ProteinID:CCB46092.1	UniProt:F6H091
EMBL:FN595227	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR005202	EntrezGene:LOC100253954	wikigene:LOC100253954	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF10	InterPro:Scarecrow-like_1	InterPro:TF_GRAS	UniParc:UPI00015C8041	ArrayExpress:VIT_18s0001g15270	EnsemblPlantsGene:VIT_18s0001g15270
EnsemblPlants:VIT_18s0001g15270.t01	unigene:Vvi.3841	RefSeq:XP_002266415	RefSeq:XP_002266415.1	RefSeq:XP_010664869.1	RefSeq:XP_010664870.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:+:13408234..13413047

Molecular Weight (calculated)

62907.2 Da

IEP (calculated)

4.691

GRAVY (calculated)

-0.410

Length

565 amino acids

Sequence
(BLAST)

001: MSLVRSAELS AKAYGNPNLY SFKGSSTGPG FSTQIFRSDK RNIVYMTESY CGESNDPKYL VDSPTEELIH PPSSGISGRP FHPQGTASYQ LIADSVSSMT
101: PEGSFFESDY LECESPDQIN YNEDKMRLKL QELERALLDD NDDDDDQSME IDADWADPIG NELLHDSPKE SSSSDSNLSS ISSNKEVSLI PTRTTKQLLF
201: DCAAALAEGN IDGASAMISE LRQKVSIQGD PPQRIAAYMV EGLAARMASS GKCLYKALKC KEPPSLDRLS AMQILFEVCP CFRFGLTAAN GAITETFKDE
301: KRVHIVDFEI NQGSQYILLL QSLAEQAGKK PHIRLTGVDD PDSIQRAVGG LKVIGQRLEN LAEDLNLSFE FQAVASKTSN VTPGMLNCKP GEALVVNFAF
401: QLHHMPDESV STVNQRDQLL RMVKSLNPKL VTIVEQDMHT NTAPFFPRFV EAYNYYSSMF DSLDATLPRG SQDRVNVERQ CLARDIVNIV ACEGEERVER
501: YEAAGKWRAR MMMAGFTSCP MSQNVSDTVR KLIREYSERY TAKEEMGALH FGWEDKSLIF ASAWR

Best Arabidopsis Sequence Match ( AT1G21450.1 )
(BLAST)

001: MVEQTVVREH IKARVMSLVR SAEPSSYRNP KLYTLNENGN NNGVSSAQIF DPDRSKNPCL TDDSYPSQSY EKYFLDSPTD EFVQHPIGSG ASVSSFGSLD
101: SFPYQSRPVL GCSMEFQLPL DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIQE LERALLGDED DKMVGIDNLM EIDSEWSYQN ESEQHQDSPK
201: ESSSADSNSH VSSKEVVSQA TPKQILISCA RALSEGKLEE ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ
301: VLFEVCPCFK FGFLAANGAI LEAIKGEEEV HIIDFDINQG NQYMTLIRSI AELPGKRPRL RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA
401: MPSKTSIVSP STLGCKPGET LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY EYYSAVFESL DMTLPRESQE
501: RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM AGFNPKPMSA KVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR

Arabidopsis Description

SCL1Scarecrow-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.