Factsheet for VIT_06s0004g04990.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68389	Canola	cytosol	9.95	51.76
Bra002564.1-P	Field mustard	endoplasmic reticulum, golgi	35.07	48.9
CDX80265	Canola	endoplasmic reticulum, golgi	34.62	48.27
TraesCS1B01G037500.1	Wheat	cytosol	44.8	47.94
VIT_06s0004g04970.t01	Wine grape	cytosol	67.19	45.14
VIT_06s0004g04980.t01	Wine grape	nucleus	66.52	41.76
HORVU3Hr1G012520.1	Barley	cytosol	42.31	41.01
PGSC0003DMT400063769	Potato	cytosol, nucleus, peroxisome	55.88	38.24
VIT_13s0019g01780.t01	Wine grape	nucleus	51.13	37.67
GSMUA_Achr10P...	Banana	nucleus	37.33	37.33
Zm00001d034664_P001	Maize	plastid	46.83	37.03
Solyc01g100200.2.1	Tomato	nucleus	55.66	36.94
KRH10240	Soybean	cytosol	50.0	36.47
VIT_08s0007g00510.t01	Wine grape	cytosol, plastid	58.14	36.25
Os04t0590400-01	Rice	cytosol, nucleus, peroxisome	52.04	36.16
KRH29771	Soybean	cytosol	55.2	35.88
KRH24773	Soybean	nucleus	55.43	35.66
Solyc06g082530.1.1	Tomato	cytosol	52.26	35.38
HORVU5Hr1G113620.1	Barley	cytosol, nucleus, peroxisome	51.36	35.25
AT3G46600.1	Thale cress	cytosol	46.38	35.16
GSMUA_Achr10P...	Banana	cytosol	47.51	35.06
PGSC0003DMT400078286	Potato	nucleus	52.26	34.63
KXG37250	Sorghum	cytosol	50.68	34.41
TraesCS5A01G481300.1	Wheat	cytosol	50.91	34.35
Bra033813.1-P	Field mustard	nucleus	45.02	34.19
GSMUA_Achr8P02550_001	Banana	nucleus	30.32	34.18
TraesCS5D01G494900.1	Wheat	cytosol	50.68	34.09
TraesCS5B01G494500.1	Wheat	cytosol	50.68	34.09
KRH23095	Soybean	cytosol	50.23	33.79
KXG38103	Sorghum	cytosol	47.74	33.71
CDY33040	Canola	nucleus	45.48	33.67
GSMUA_Achr7P15080_001	Banana	cytosol	45.02	33.28
KRH23094	Soybean	cytosol	41.4	33.09
CDX68388	Canola	cytosol	31.0	33.09
AT5G59450.1	Thale cress	nucleus	45.48	32.95
CDX82987	Canola	nucleus	44.8	32.95
GSMUA_Achr6P34090_001	Banana	nucleus	45.48	32.84
VIT_13s0019g01810.t01	Wine grape	cytosol	55.2	32.62
KXG21079	Sorghum	cytosol	45.93	32.58
HORVU3Hr1G012550.6	Barley	cytosol	43.89	32.55
KXG21080	Sorghum	cytosol	45.93	32.43
Zm00001d011070_P001	Maize	cytosol	45.93	32.38
Zm00001d035671_P001	Maize	cytosol	45.7	32.27
VIT_06s0004g04950.t01	Wine grape	cytosol	54.98	32.23
VIT_13s0019g01710.t01	Wine grape	cytosol	52.94	32.19
Zm00001d028603_P001	Maize	cytosol	53.39	32.15
OQU92829	Sorghum	cytosol	53.17	32.02
VIT_13s0019g01790.t01	Wine grape	cytosol	52.04	31.99
VIT_13s0019g01700.t01	Wine grape	cytosol	54.52	31.71
Os03t0690600-03	Rice	cytosol	52.04	31.46
TraesCS5D01G152700.1	Wheat	cytosol, plastid	52.26	29.84
TraesCS5A01G139000.1	Wheat	cytosol, plastid	52.26	29.77
TraesCS5B01G138100.1	Wheat	cytosol, plastid	52.04	29.64
VIT_06s0004g04960.t01	Wine grape	nucleus	53.17	29.49
HORVU5Hr1G045020.29	Barley	cytosol	52.04	29.22
TraesCS1B01G037300.1	Wheat	cytosol	45.93	28.84
TraesCS3D01G067900.1	Wheat	nucleus	44.8	28.7
TraesCS1D01G030900.1	Wheat	cytosol	45.93	28.47
TraesCS1D01G030800.1	Wheat	cytosol	45.02	28.39
EES18882	Sorghum	cytosol	47.06	28.38
TraesCS1A01G030300.1	Wheat	cytosol	45.25	28.33
TraesCS3B01G081100.1	Wheat	nucleus	45.7	28.25
TraesCS1D01G031000.1	Wheat	cytosol	46.15	28.14
Zm00001d047813_P002	Maize	nucleus	52.71	28.11
Zm00001d035670_P001	Maize	cytosol	46.15	28.1
TraesCS1B01G037400.1	Wheat	cytosol	45.93	28.08
HORVU1Hr1G004440.1	Barley	cytosol	45.25	27.82
TraesCS3A01G068000.1	Wheat	nucleus	45.02	27.79
TraesCS1A01G030200.1	Wheat	cytosol	45.25	27.74
GSMUA_AchrUn_...	Banana	cytosol	41.18	27.62
EER91260	Sorghum	nucleus	44.8	27.46
OQU91407	Sorghum	nucleus	42.53	27.41
KXG38064	Sorghum	nucleus	44.12	27.08
TraesCS3B01G081000.1	Wheat	cytosol	44.57	27.06
TraesCS3D01G067800.1	Wheat	nucleus	41.18	26.92
TraesCS1D01G031200.1	Wheat	cytosol	44.34	26.89
Zm00001d033166_P001	Maize	nucleus	44.34	26.78
TraesCS3D01G067700.1	Wheat	cytosol	43.44	26.59
EES18880	Sorghum	cytosol	44.57	26.59
TraesCS3A01G067900.1	Wheat	cytosol	42.99	26.32
TraesCS3B01G080900.1	Wheat	nucleus	42.76	26.21
TraesCS1B01G037200.1	Wheat	nucleus	43.44	25.36
VIT_19s0090g01740.t01	Wine grape	cytosol	31.0	25.14
VIT_00s0463g00020.t01	Wine grape	nucleus	30.77	24.95
OQU91406	Sorghum	nucleus	41.86	24.73
VIT_12s0057g00560.t01	Wine grape	cytosol	30.09	24.4
VIT_19s0014g04940.t01	Wine grape	cytosol	30.32	22.98
VIT_04s0044g01370.t01	Wine grape	nucleus	27.15	21.13
VIT_18s0001g15270.t01	Wine grape	cytosol, plastid	26.7	20.89
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	24.43	18.34

Protein Annotations

EntrezGene:100245086	wikigene:100245086	MapMan:15.5.12	ProteinID:CCB43557	ProteinID:CCB43557.1	UniProt:F6GUZ8
EMBL:FN594951	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR005202	EntrezGene:LOC100245086	wikigene:LOC100245086	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF56	InterPro:TF_GRAS	UniParc:UPI00015C7459	ArrayExpress:VIT_06s0004g04990	EnsemblPlantsGene:VIT_06s0004g04990	EnsemblPlants:VIT_06s0004g04990.t01
RefSeq:XP_002280755	RefSeq:XP_002280755.2	RefSeq:XP_019075847.1	:	:	:

Description

No Description!

Coordinates

chr6:+:5942791..5944128

Molecular Weight (calculated)

50926.3 Da

IEP (calculated)

9.077

GRAVY (calculated)

-0.425

Length

442 amino acids

Sequence
(BLAST)

001: MAVHAQNSEP PNVFDEALLY NDLNMSKLCI NDDEASKKLQ QNERSKGSNT KVGRVKRRSK GEVVDLRSLL IQCAQAVAGN DQRAATELLK LIRQHSSPMG
101: DGSQRLAHFF ANGLEARLVG LGMKIYEEYK APGIERPLAA DIIRAYKVYA SACPFKRMSY FFGNWMIGKV AEKATRLHII DFGILFGFQW PSFIQHLSQR
201: PGGPPRLRIT GIDFPQPGFR PAERVEDSGY RLADYCNRFK VPFEYHAIAE KWENIRLEDL KIDKDEKLVV NSLYRLKNLL DETVVEDCPR DAVLNLIRRI
301: NPEIFIHGIV SGSFNGPFFL LRFKEALHQY DALFDMLDAT VPREDQDRML FEKVVYGRYS MNIIAHEGSE RFERPETYKQ WQARNVKAGF RQLLLDQEIL
401: SRVRTTVKQG FHKNFMVEED GGWMLQGWKG RTIHALSCWK PC

Best Arabidopsis Sequence Match ( AT1G07530.1 )
(BLAST)

001: MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS

Arabidopsis Description

SCL14SCL14 [Source:UniProtKB/TrEMBL;Acc:A0A178WH17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.