Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033813.1-P | Field mustard | nucleus | 95.01 | 98.11 |
| CDX68389 | Canola | cytosol | 13.81 | 97.65 |
| CDX68388 | Canola | cytosol | 64.06 | 93.0 |
| AT3G46600.1 | Thale cress | cytosol | 81.7 | 84.22 |
| CDX80265 | Canola | endoplasmic reticulum, golgi | 38.1 | 72.24 |
| CDY33040 | Canola | nucleus | 63.39 | 63.82 |
| VIT_06s0004g04990.t01 | Wine grape | cytosol | 32.95 | 44.8 |
| TraesCS1B01G037500.1 | Wheat | cytosol | 29.28 | 42.62 |
| PGSC0003DMT400063769 | Potato | cytosol, nucleus, peroxisome | 45.42 | 42.26 |
| Solyc01g100200.2.1 | Tomato | nucleus | 46.59 | 42.04 |
| KRH10240 | Soybean | cytosol | 41.1 | 40.76 |
| Zm00001d034664_P001 | Maize | plastid | 37.44 | 40.25 |
| KRH23095 | Soybean | cytosol | 43.76 | 40.03 |
| KRH24773 | Soybean | nucleus | 44.59 | 39.01 |
| HORVU3Hr1G012520.1 | Barley | cytosol | 29.28 | 38.6 |
| KRH29771 | Soybean | cytosol | 43.59 | 38.53 |
| KRH23094 | Soybean | cytosol | 35.11 | 38.16 |
| VIT_06s0004g04980.t01 | Wine grape | nucleus | 44.59 | 38.07 |
| Solyc06g082530.1.1 | Tomato | cytosol | 41.1 | 37.83 |
| PGSC0003DMT400078286 | Potato | nucleus | 41.76 | 37.63 |
| VIT_06s0004g04970.t01 | Wine grape | cytosol | 40.93 | 37.39 |
| KXG37250 | Sorghum | cytosol | 39.93 | 36.87 |
| GSMUA_Achr10P... | Banana | nucleus | 26.96 | 36.65 |
| Os04t0590400-01 | Rice | cytosol, nucleus, peroxisome | 38.77 | 36.64 |
| CDY39530 | Canola | cytosol | 37.44 | 36.35 |
| CDY47877 | Canola | nucleus | 37.1 | 36.08 |
| CDY71578 | Canola | nucleus, plastid | 31.11 | 35.89 |
| HORVU5Hr1G113620.1 | Barley | cytosol, nucleus, peroxisome | 38.1 | 35.56 |
| GSMUA_Achr10P... | Banana | cytosol | 35.27 | 35.39 |
| CDX86475 | Canola | nucleus | 41.43 | 35.07 |
| Zm00001d035671_P001 | Maize | cytosol | 36.44 | 34.98 |
| TraesCS5B01G494500.1 | Wheat | cytosol | 38.1 | 34.86 |
| TraesCS5D01G494900.1 | Wheat | cytosol | 38.1 | 34.86 |
| TraesCS5A01G481300.1 | Wheat | cytosol | 37.94 | 34.81 |
| KXG21080 | Sorghum | cytosol | 36.11 | 34.66 |
| KXG38103 | Sorghum | cytosol | 35.77 | 34.34 |
| CDY06266 | Canola | cytosol | 36.11 | 34.34 |
| Zm00001d011070_P001 | Maize | cytosol | 35.77 | 34.29 |
| CDX79750 | Canola | peroxisome | 38.27 | 34.12 |
| KXG21079 | Sorghum | cytosol | 35.27 | 34.03 |
| CDY07777 | Canola | cytosol, nucleus, peroxisome | 38.1 | 34.03 |
| GSMUA_Achr7P15080_001 | Banana | cytosol | 33.61 | 33.78 |
| CDY47878 | Canola | nucleus | 38.1 | 33.14 |
| CDY15616 | Canola | nucleus | 39.1 | 32.87 |
| Os03t0690600-03 | Rice | cytosol | 39.93 | 32.83 |
| CDY06265 | Canola | cytosol | 37.44 | 32.61 |
| GSMUA_Achr6P34090_001 | Banana | nucleus | 33.11 | 32.52 |
| OQU92829 | Sorghum | cytosol | 39.6 | 32.43 |
| HORVU3Hr1G012550.6 | Barley | cytosol | 31.78 | 32.05 |
| Zm00001d028603_P001 | Maize | cytosol | 39.1 | 32.02 |
| CDY09912 | Canola | cytosol | 36.94 | 31.71 |
| GSMUA_Achr8P02550_001 | Banana | nucleus | 20.63 | 31.63 |
| CDX77228 | Canola | cytosol | 34.44 | 30.8 |
| TraesCS1B01G037300.1 | Wheat | cytosol | 35.61 | 30.4 |
| TraesCS1D01G030900.1 | Wheat | cytosol | 35.27 | 29.73 |
| TraesCS1A01G030300.1 | Wheat | cytosol | 34.78 | 29.6 |
| CDY07309 | Canola | cytosol | 11.81 | 29.58 |
| TraesCS1D01G030800.1 | Wheat | cytosol | 34.44 | 29.53 |
| CDY31749 | Canola | cytosol | 35.61 | 29.48 |
| Zm00001d035670_P001 | Maize | cytosol | 35.61 | 29.48 |
| TraesCS1B01G037400.1 | Wheat | cytosol | 35.27 | 29.32 |
| TraesCS5A01G139000.1 | Wheat | cytosol, plastid | 37.77 | 29.25 |
| TraesCS5D01G152700.1 | Wheat | cytosol, plastid | 37.6 | 29.2 |
| TraesCS5B01G138100.1 | Wheat | cytosol, plastid | 37.6 | 29.12 |
| HORVU5Hr1G045020.29 | Barley | cytosol | 38.1 | 29.1 |
| HORVU1Hr1G004440.1 | Barley | cytosol | 34.78 | 29.07 |
| OQU91407 | Sorghum | nucleus | 32.95 | 28.86 |
| TraesCS1A01G030200.1 | Wheat | cytosol | 34.61 | 28.85 |
| TraesCS3D01G067900.1 | Wheat | nucleus | 33.11 | 28.84 |
| EES18882 | Sorghum | cytosol | 35.11 | 28.79 |
| TraesCS1D01G031000.1 | Wheat | cytosol | 34.61 | 28.69 |
| CDY00883 | Canola | cytosol | 19.3 | 28.64 |
| Zm00001d047813_P002 | Maize | nucleus | 39.27 | 28.47 |
| GSMUA_AchrUn_... | Banana | cytosol | 31.11 | 28.38 |
| TraesCS1D01G031200.1 | Wheat | cytosol | 34.11 | 28.12 |
| CDY09911 | Canola | nucleus | 27.12 | 27.91 |
| TraesCS3B01G081100.1 | Wheat | nucleus | 32.95 | 27.69 |
| Zm00001d033166_P001 | Maize | nucleus | 33.44 | 27.46 |
| EES18880 | Sorghum | cytosol | 33.78 | 27.4 |
| TraesCS3B01G081000.1 | Wheat | cytosol | 33.11 | 27.34 |
| TraesCS3B01G080900.1 | Wheat | nucleus | 32.78 | 27.32 |
| TraesCS3D01G067700.1 | Wheat | cytosol | 32.78 | 27.29 |
| TraesCS3A01G068000.1 | Wheat | nucleus | 32.45 | 27.23 |
| KXG38064 | Sorghum | nucleus | 32.45 | 27.08 |
| EER91260 | Sorghum | nucleus | 32.45 | 27.05 |
| TraesCS3A01G067900.1 | Wheat | cytosol | 32.45 | 27.01 |
| TraesCS3D01G067800.1 | Wheat | nucleus | 30.28 | 26.92 |
| OQU91406 | Sorghum | nucleus | 33.11 | 26.6 |
| TraesCS1B01G037200.1 | Wheat | nucleus | 32.61 | 25.89 |
| CDY71156 | Canola | cytosol, plastid | 16.64 | 25.64 |
| CDY22807 | Canola | nucleus | 17.47 | 25.0 |
| CDY37124 | Canola | nucleus | 17.47 | 25.0 |
| CDY00074 | Canola | cytosol, plastid | 20.3 | 24.55 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 20.13 | 24.35 |
| CDY19966 | Canola | cytosol | 19.97 | 24.29 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 19.97 | 24.14 |
| CDY05700 | Canola | cytosol, plastid | 19.63 | 23.74 |
| CDY71174 | Canola | cytosol, plastid | 19.63 | 23.74 |
| CDY00533 | Canola | cytosol | 17.14 | 23.09 |
| CDY27821 | Canola | cytosol | 16.81 | 22.75 |
| CDY58168 | Canola | plastid | 19.97 | 22.64 |
| CDY35589 | Canola | cytosol | 19.63 | 22.22 |
| CDY50128 | Canola | cytosol, plastid | 19.63 | 22.14 |
| CDY42968 | Canola | cytosol | 19.63 | 22.06 |
| CDY00377 | Canola | cytosol | 18.8 | 20.55 |
| CDY61060 | Canola | cytosol | 18.14 | 20.22 |
| CDY27063 | Canola | cytosol, plastid | 19.13 | 19.97 |
| CDY68224 | Canola | cytosol | 17.97 | 18.75 |
| CDY50240 | Canola | cytosol | 17.8 | 18.58 |
| CDX91655 | Canola | cytosol | 18.14 | 18.54 |
Protein Annotations
| EnsemblPlants:CDX82987 | EnsemblPlantsGene:GSBRNA2T00138423001 | GO:A0A078D1J5 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF56 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:CDX82987 | ProteinID:CDX82987.1 | SEG:seg |
| UniParc:UPI0004EE1BD7 | MapMan:15.5.12 | : | : | : | : |
Description
BnaA01g19870D
Coordinates
chrLK031831:+:250419..252405
Molecular Weight (calculated)
68332.8 Da
IEP (calculated)
5.486
GRAVY (calculated)
-0.546
Length
601 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAILQVPVD GFRFDNGSGS CCKPRNNLDS GTSRFTCFKE SESQNLSSPT ESTESQNRSS QTESTVCSTN HPVLKYINDM LMEEDIEEQS CMLEDSLALQ
101: AAERSFFEVL QEDQKPSDQD DSSLENLSPL HQPTSGFTGS PEITSEESTR RYHRLRDDEE EDDLQGGRKS KLPAISVVDE LAEKLEEVLL VCQKKDHGEA
201: TPNKTGRAKG SLNRSKPQKS DQPVDMRNLL MQCAQAVASF DQSRAFEKLK EIREHSSSHG DATQRLGYHL ANALEARITG TMKTPAFDVL SRTSMVDILK
301: AYKEFVQACP TLAMCYYTAN RSIFELASKA TALHIVDFGI LYGFQWPCLI QALSARPGGP PKLRVTGIEL PQPGFRPSER VEETGRRLKR FCDKFSVPFE
401: YNFIAKAWDT ITLDELVINS GETTVVNCIL RLQYTPDETV SLNSPRDTAL KLFRDINPDL FVFAEINGTY NSPFFLTRFR EAMFHCSSLF DMFESNISEE
501: NDCRTLVERE LIIKDAMSVI ACEGAERFAR PETYKQWQVR ILRAGFRPAK LNKQIMKEGK ELVRDRYHKD FVIDNDNHWM FQGWKGRVLY ALSCWKPAKK
601: Q
101: AAERSFFEVL QEDQKPSDQD DSSLENLSPL HQPTSGFTGS PEITSEESTR RYHRLRDDEE EDDLQGGRKS KLPAISVVDE LAEKLEEVLL VCQKKDHGEA
201: TPNKTGRAKG SLNRSKPQKS DQPVDMRNLL MQCAQAVASF DQSRAFEKLK EIREHSSSHG DATQRLGYHL ANALEARITG TMKTPAFDVL SRTSMVDILK
301: AYKEFVQACP TLAMCYYTAN RSIFELASKA TALHIVDFGI LYGFQWPCLI QALSARPGGP PKLRVTGIEL PQPGFRPSER VEETGRRLKR FCDKFSVPFE
401: YNFIAKAWDT ITLDELVINS GETTVVNCIL RLQYTPDETV SLNSPRDTAL KLFRDINPDL FVFAEINGTY NSPFFLTRFR EAMFHCSSLF DMFESNISEE
501: NDCRTLVERE LIIKDAMSVI ACEGAERFAR PETYKQWQVR ILRAGFRPAK LNKQIMKEGK ELVRDRYHKD FVIDNDNHWM FQGWKGRVLY ALSCWKPAKK
601: Q
001: MDAILPVPVD GFRFDTGSGS CCKPRNNLES GTTNRFTCFN ESESQSNPSP TESKVCSDYL PVFKYINDML MEEDLEGQSC MLEDSLALQA AERSFFEVLQ
101: DQTPISGDLE DGSLGNFSSI TSLHQPEVSE ESTRRYRHRD DDEDDDLESG RKSKLPAIST VDELAEKFEE VLLVCQKNDQ GEATEKKTRH VKGSSNRYKQ
201: QKSDQPVDMR NLLMQCAQAV ASFDQRRAFE KLKEIREHSS RHGDATQRLG YHFAEALEAR ITGTMTTPIS ATSSRTSMVD ILKAYKGFVQ ACPTLIMCYF
301: TANRTINELA SKATTLHIID FGILYGFQWP CLIQALSKRD IGPPLLRVTG IELPQSGFRP SERVEETGRR LKRFCDKFNV PFEYSFIAKN WENITLDDLV
401: INSGETTVVN CILRLQYTPD ETVSLNSPRD TALKLFRDIN PDLFVFAEIN GTYNSPFFLT RFREALFHCS SLFDMYETTL SEDDNCRTLV ERELIIRDAM
501: SVIACEGSER FARPETYKQW QVRILRAGFR PAKLSKQIVK DGKEIVKERY HKDFVIDNDN HWMFQGWKGR VLYAVSCWKP AKK
101: DQTPISGDLE DGSLGNFSSI TSLHQPEVSE ESTRRYRHRD DDEDDDLESG RKSKLPAIST VDELAEKFEE VLLVCQKNDQ GEATEKKTRH VKGSSNRYKQ
201: QKSDQPVDMR NLLMQCAQAV ASFDQRRAFE KLKEIREHSS RHGDATQRLG YHFAEALEAR ITGTMTTPIS ATSSRTSMVD ILKAYKGFVQ ACPTLIMCYF
301: TANRTINELA SKATTLHIID FGILYGFQWP CLIQALSKRD IGPPLLRVTG IELPQSGFRP SERVEETGRR LKRFCDKFNV PFEYSFIAKN WENITLDDLV
401: INSGETTVVN CILRLQYTPD ETVSLNSPRD TALKLFRDIN PDLFVFAEIN GTYNSPFFLT RFREALFHCS SLFDMYETTL SEDDNCRTLV ERELIIRDAM
501: SVIACEGSER FARPETYKQW QVRILRAGFR PAKLSKQIVK DGKEIVKERY HKDFVIDNDN HWMFQGWKGR VLYAVSCWKP AKK
Arabidopsis Description
SCL30Scarecrow-like protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.