Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31749 | Canola | cytosol | 96.88 | 89.67 |
| CDY47878 | Canola | nucleus | 70.68 | 68.74 |
| AT2G29060.1 | Thale cress | cytosol | 70.54 | 68.3 |
| CDY71578 | Canola | nucleus, plastid | 52.53 | 67.75 |
| CDY15616 | Canola | nucleus | 59.23 | 55.66 |
| CDX86475 | Canola | nucleus | 58.18 | 55.07 |
| KRH24780 | Soybean | cytosol | 45.68 | 46.52 |
| CDX80265 | Canola | endoplasmic reticulum, golgi | 20.68 | 43.85 |
| VIT_06s0004g04950.t01 | Wine grape | cytosol | 48.07 | 42.84 |
| CDX68389 | Canola | cytosol | 5.36 | 42.35 |
| GSMUA_Achr10P... | Banana | nucleus | 27.23 | 41.4 |
| KRH29779 | Soybean | cytosol | 45.68 | 41.37 |
| TraesCS1B01G037500.1 | Wheat | cytosol | 25.15 | 40.92 |
| HORVU3Hr1G012520.1 | Barley | cytosol | 27.23 | 40.13 |
| Zm00001d034664_P001 | Maize | plastid | 32.89 | 39.53 |
| VIT_06s0004g04960.t01 | Wine grape | nucleus | 46.73 | 39.4 |
| GSMUA_Achr10P... | Banana | cytosol | 34.97 | 39.23 |
| KRH10243 | Soybean | nucleus | 38.69 | 39.1 |
| GSMUA_Achr7P15080_001 | Banana | cytosol | 34.38 | 38.63 |
| Os04t0590400-01 | Rice | cytosol, nucleus, peroxisome | 36.31 | 38.36 |
| KRH23089 | Soybean | cytosol | 36.76 | 38.35 |
| CDY47877 | Canola | nucleus | 35.27 | 38.35 |
| CDX79750 | Canola | peroxisome | 38.39 | 38.28 |
| CDY07777 | Canola | cytosol, nucleus, peroxisome | 37.95 | 37.89 |
| CDY39530 | Canola | cytosol | 34.82 | 37.8 |
| GSMUA_Achr8P02550_001 | Banana | nucleus | 22.02 | 37.76 |
| OQU92829 | Sorghum | cytosol | 41.07 | 37.6 |
| KRH23090 | Soybean | vacuole | 34.52 | 37.36 |
| Zm00001d028603_P001 | Maize | cytosol | 40.48 | 37.06 |
| CDY06266 | Canola | cytosol | 34.82 | 37.03 |
| KXG37250 | Sorghum | cytosol | 35.57 | 36.71 |
| CDY33040 | Canola | nucleus | 32.59 | 36.68 |
| Os03t0690600-03 | Rice | cytosol | 39.88 | 36.66 |
| KXG38103 | Sorghum | cytosol | 34.08 | 36.58 |
| GSMUA_Achr6P34090_001 | Banana | nucleus | 33.04 | 36.27 |
| HORVU5Hr1G113620.1 | Barley | cytosol, nucleus, peroxisome | 34.67 | 36.18 |
| TraesCS5B01G494500.1 | Wheat | cytosol | 35.27 | 36.07 |
| TraesCS5A01G481300.1 | Wheat | cytosol | 35.12 | 36.03 |
| TraesCS5D01G494900.1 | Wheat | cytosol | 35.12 | 35.92 |
| KXG21079 | Sorghum | cytosol | 33.04 | 35.63 |
| KXG21080 | Sorghum | cytosol | 33.04 | 35.46 |
| Zm00001d035671_P001 | Maize | cytosol | 32.74 | 35.14 |
| Zm00001d011070_P001 | Maize | cytosol | 32.74 | 35.09 |
| CDX82987 | Canola | nucleus | 30.8 | 34.44 |
| HORVU3Hr1G012550.6 | Barley | cytosol | 30.06 | 33.89 |
| CDY06265 | Canola | cytosol | 34.52 | 33.62 |
| TraesCS5D01G152700.1 | Wheat | cytosol, plastid | 38.54 | 33.46 |
| CDY09911 | Canola | nucleus | 29.02 | 33.39 |
| TraesCS5A01G139000.1 | Wheat | cytosol, plastid | 38.54 | 33.38 |
| TraesCS5B01G138100.1 | Wheat | cytosol, plastid | 38.39 | 33.25 |
| HORVU5Hr1G045020.29 | Barley | cytosol | 38.54 | 32.91 |
| Zm00001d047813_P002 | Maize | nucleus | 40.48 | 32.81 |
| CDY09912 | Canola | cytosol | 34.08 | 32.71 |
| CDX68388 | Canola | cytosol | 19.49 | 31.64 |
| EER91260 | Sorghum | nucleus | 33.63 | 31.35 |
| TraesCS3D01G067800.1 | Wheat | nucleus | 31.25 | 31.07 |
| TraesCS3A01G067900.1 | Wheat | cytosol | 33.33 | 31.02 |
| TraesCS3D01G067700.1 | Wheat | cytosol | 33.33 | 31.02 |
| TraesCS3D01G067900.1 | Wheat | nucleus | 31.85 | 31.01 |
| GSMUA_AchrUn_... | Banana | cytosol | 30.36 | 30.96 |
| OQU91407 | Sorghum | nucleus | 31.4 | 30.76 |
| TraesCS3B01G080900.1 | Wheat | nucleus | 32.89 | 30.65 |
| KXG38064 | Sorghum | nucleus | 32.74 | 30.56 |
| TraesCS1A01G030300.1 | Wheat | cytosol | 31.99 | 30.45 |
| TraesCS1D01G030800.1 | Wheat | cytosol | 31.7 | 30.39 |
| Zm00001d033166_P001 | Maize | nucleus | 33.04 | 30.33 |
| TraesCS3A01G068000.1 | Wheat | nucleus | 32.29 | 30.31 |
| TraesCS1B01G037300.1 | Wheat | cytosol | 31.7 | 30.26 |
| HORVU1Hr1G004440.1 | Barley | cytosol | 32.29 | 30.18 |
| OQU91406 | Sorghum | nucleus | 33.33 | 29.95 |
| TraesCS3B01G081100.1 | Wheat | nucleus | 31.7 | 29.79 |
| TraesCS3B01G081000.1 | Wheat | cytosol | 32.14 | 29.67 |
| TraesCS1D01G030900.1 | Wheat | cytosol | 31.4 | 29.59 |
| EES18882 | Sorghum | cytosol | 32.14 | 29.47 |
| TraesCS1B01G037400.1 | Wheat | cytosol | 31.55 | 29.32 |
| TraesCS1D01G031200.1 | Wheat | cytosol | 31.7 | 29.22 |
| TraesCS1D01G031000.1 | Wheat | cytosol | 31.25 | 28.97 |
| Zm00001d035670_P001 | Maize | cytosol | 31.1 | 28.79 |
| CDY07309 | Canola | cytosol | 10.27 | 28.75 |
| TraesCS1A01G030200.1 | Wheat | cytosol | 30.65 | 28.57 |
| EES18880 | Sorghum | cytosol | 31.4 | 28.48 |
| CDY00883 | Canola | cytosol | 16.22 | 26.91 |
| TraesCS1B01G037200.1 | Wheat | nucleus | 30.06 | 26.68 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 19.05 | 25.75 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 18.9 | 25.55 |
| CDY05700 | Canola | cytosol, plastid | 18.45 | 24.95 |
| CDY71156 | Canola | cytosol, plastid | 14.43 | 24.87 |
| CDY71174 | Canola | cytosol, plastid | 18.3 | 24.75 |
| CDY00074 | Canola | cytosol, plastid | 18.15 | 24.55 |
| CDY19966 | Canola | cytosol | 18.01 | 24.49 |
| CDY22807 | Canola | nucleus | 15.03 | 24.05 |
| CDY37124 | Canola | nucleus | 15.03 | 24.05 |
| CDY58168 | Canola | plastid | 18.6 | 23.58 |
| CDY42968 | Canola | cytosol | 18.45 | 23.18 |
| CDY35589 | Canola | cytosol | 18.3 | 23.16 |
| CDY50128 | Canola | cytosol, plastid | 18.3 | 23.08 |
| CDY61060 | Canola | cytosol | 17.41 | 21.71 |
| CDY00377 | Canola | cytosol | 17.41 | 21.27 |
| CDY27821 | Canola | cytosol | 13.69 | 20.72 |
| CDY00533 | Canola | cytosol | 13.69 | 20.63 |
| CDY68224 | Canola | cytosol | 17.26 | 20.14 |
| CDY50240 | Canola | cytosol | 17.11 | 19.97 |
| CDY27063 | Canola | cytosol, plastid | 15.03 | 17.53 |
| CDX91655 | Canola | cytosol | 14.29 | 16.33 |
Protein Annotations
| EnsemblPlants:CDX77228 | EnsemblPlantsGene:GSBRNA2T00127897001 | GO:A0A078CQ79 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF132 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:CDX77228 | ProteinID:CDX77228.1 | SEG:seg |
| UniParc:UPI0004EDD1B8 | MapMan:15.5.12 | : | : | : | : |
Description
BnaC04g40230D
Coordinates
chrLK031809:+:2299335..2301512
Molecular Weight (calculated)
76454.0 Da
IEP (calculated)
6.338
GRAVY (calculated)
-0.561
Length
672 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSYSAGFPG SFDNFHFNCK IDFSNLGNGL YLDDQPFLRS PSPFPPLPLP PLHPPPHPEP YSQQNLHAAD ADADVDADDD CTDSVLQYIS QVLMEEDMDD
101: KPCMFHDALS LQAAERSLYE ALGEKYPDST SPIQLAHNPD ELSDITSSGY TSRTTTTTTT SSDWSFDSLE NSRPSWMQTS IPKNFVFQST PSTRSSPTSG
201: RNTGIRSSSS NDLLVIDVEN DHHYVPYRIT GEKCHWREDE HLPEERNKKQ SAVYADDPEL SEMFDKILLF GDPKENPKCI LNETSQKEPP KASPSPKGET
301: TTYPRGQKPT AYVKEIPDLR SLLLSCAQAV SVNDHRRAEG LLRLVRQHSS SYGDGTERLA HYFANSLEAR LAGTGTQVYT ALSSKKTSAA DMLKAYQTYK
401: TMPNTIHIID FGISYGFQWH SLVHRLAWRR GSTCKLRITG IDLPQRGFRP ANGVIETGHR LAKYCKKFNV PFEYNAIAQK WETIKLEDLK LKEGEFVAVN
501: SLFRFRNLLD ETVAVDSPRD VVLRLIQKIK PNIFIPSILS GSYNAPFFVT RFREVLYHFS SLFDMCDTTL TREDPMRVVF EKEFYGREIM NVVACEGTAR
601: VERPESYKQW QGRMVRAGFR QLPVEKELVQ KLRLMVDKEY KSKEFDVDQD GNWFLQGWKG RLVYASSFWV SV
101: KPCMFHDALS LQAAERSLYE ALGEKYPDST SPIQLAHNPD ELSDITSSGY TSRTTTTTTT SSDWSFDSLE NSRPSWMQTS IPKNFVFQST PSTRSSPTSG
201: RNTGIRSSSS NDLLVIDVEN DHHYVPYRIT GEKCHWREDE HLPEERNKKQ SAVYADDPEL SEMFDKILLF GDPKENPKCI LNETSQKEPP KASPSPKGET
301: TTYPRGQKPT AYVKEIPDLR SLLLSCAQAV SVNDHRRAEG LLRLVRQHSS SYGDGTERLA HYFANSLEAR LAGTGTQVYT ALSSKKTSAA DMLKAYQTYK
401: TMPNTIHIID FGISYGFQWH SLVHRLAWRR GSTCKLRITG IDLPQRGFRP ANGVIETGHR LAKYCKKFNV PFEYNAIAQK WETIKLEDLK LKEGEFVAVN
501: SLFRFRNLLD ETVAVDSPRD VVLRLIQKIK PNIFIPSILS GSYNAPFFVT RFREVLYHFS SLFDMCDTTL TREDPMRVVF EKEFYGREIM NVVACEGTAR
601: VERPESYKQW QGRMVRAGFR QLPVEKELVQ KLRLMVDKEY KSKEFDVDQD GNWFLQGWKG RLVYASSFWV SV
001: MGSYSAGFPG SLDWFDFPGL GNGSYLNDQP LLDIGSVPPP LDPYPQQNLA SADADFSDSV LKYISQVLME EDMEDKPCMF HDALSLQAAE KSLYEALGEK
101: YPVDDSDQPL TTTTSLAQLV SSPGGSSYAS STTTTSSDSQ WSFDCLENNR PSSWLQTPIP SNFIFQSTST RASSGNAVFG SSFSGDLVSN MFNDTDLALQ
201: FKKGMEEASK FLPKSSQLVI DNSVPNRLTG KKSHWREEEH LTEERSKKQS AIYVDETDEL TDMFDNILIF GEAKEQPVCI LNESFPKEPA KASTFSKSPK
301: GEKPEASGNS YTKETPDLRT MLVSCAQAVS INDRRTADEL LSRIRQHSSS YGDGTERLAH YFANSLEARL AGIGTQVYTA LSSKKTSTSD MLKAYQTYIS
401: VCPFKKIAII FANHSIMRLA SSANAKTIHI IDFGISDGFQ WPSLIHRLAW RRGSSCKLRI TGIELPQRGF RPAEGVIETG RRLAKYCQKF NIPFEYNAIA
501: QKWESIKLED LKLKEGEFVA VNSLFRFRNL LDETVAVHSP RDTVLKLIRK IKPDVFIPGI LSGSYNAPFF VTRFREVLFH YSSLFDMCDT NLTREDPMRV
601: MFEKEFYGRE IMNVVACEGT ERVERPESYK QWQARAMRAG FRQIPLEKEL VQKLKLMVES GYKPKEFDVD QDCHWLLQGW KGRIVYGSSI WVPL
101: YPVDDSDQPL TTTTSLAQLV SSPGGSSYAS STTTTSSDSQ WSFDCLENNR PSSWLQTPIP SNFIFQSTST RASSGNAVFG SSFSGDLVSN MFNDTDLALQ
201: FKKGMEEASK FLPKSSQLVI DNSVPNRLTG KKSHWREEEH LTEERSKKQS AIYVDETDEL TDMFDNILIF GEAKEQPVCI LNESFPKEPA KASTFSKSPK
301: GEKPEASGNS YTKETPDLRT MLVSCAQAVS INDRRTADEL LSRIRQHSSS YGDGTERLAH YFANSLEARL AGIGTQVYTA LSSKKTSTSD MLKAYQTYIS
401: VCPFKKIAII FANHSIMRLA SSANAKTIHI IDFGISDGFQ WPSLIHRLAW RRGSSCKLRI TGIELPQRGF RPAEGVIETG RRLAKYCQKF NIPFEYNAIA
501: QKWESIKLED LKLKEGEFVA VNSLFRFRNL LDETVAVHSP RDTVLKLIRK IKPDVFIPGI LSGSYNAPFF VTRFREVLFH YSSLFDMCDT NLTREDPMRV
601: MFEKEFYGRE IMNVVACEGT ERVERPESYK QWQARAMRAG FRQIPLEKEL VQKLKLMVES GYKPKEFDVD QDCHWLLQGW KGRIVYGSSI WVPL
Arabidopsis Description
SCL33Scarecrow-like protein 33 [Source:UniProtKB/Swiss-Prot;Acc:P0C883]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.