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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, peroxisome
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5B01G494500.1 Wheat cytosol 93.79 91.93
TraesCS5D01G494900.1 Wheat cytosol 93.32 91.48
TraesCS5A01G481300.1 Wheat cytosol 91.77 90.23
Os04t0590400-01 Rice cytosol, nucleus, peroxisome 67.7 68.55
Zm00001d034664_P001 Maize plastid 55.12 63.51
KXG37250 Sorghum cytosol 62.42 61.75
Solyc04g011630.1.1 Tomato cytosol 15.68 59.41
CDX68389 Canola cytosol 7.76 58.82
VIT_06s0004g04990.t01 Wine grape cytosol 35.25 51.36
Bra002564.1-P Field mustard endoplasmic reticulum, golgi 24.53 49.84
CDX80265 Canola endoplasmic reticulum, golgi 24.22 49.21
HORVU3Hr1G012520.1 Barley cytosol 33.39 47.15
PGSC0003DMT400005480 Potato cytosol 33.39 44.15
VIT_08s0007g00510.t01 Wine grape cytosol, plastid 46.89 42.6
PGSC0003DMT400049420 Potato cytosol 42.55 41.27
PGSC0003DMT400063769 Potato cytosol, nucleus, peroxisome 40.99 40.87
AT3G46600.1 Thale cress cytosol 36.49 40.31
KRH65839 Soybean cytosol, plastid 45.34 40.0
VIT_13s0019g01780.t01 Wine grape nucleus 36.8 39.5
Bra015584.1-P Field mustard cytosol 26.71 39.45
KRH10240 Soybean cytosol 37.11 39.44
KRH29771 Soybean cytosol 41.61 39.41
KRH24780 Soybean cytosol 40.37 39.39
Solyc01g100200.2.1 Tomato nucleus 40.68 39.34
Bra033813.1-P Field mustard nucleus 35.4 39.18
VIT_06s0004g04970.t01 Wine grape cytosol 39.91 39.06
KRH29773 Soybean cytosol 37.11 38.93
KRH24773 Soybean nucleus 41.46 38.86
VIT_06s0004g04980.t01 Wine grape nucleus 42.39 38.78
VIT_13s0019g01810.t01 Wine grape cytosol 45.03 38.77
Solyc06g082530.1.1 Tomato cytosol 39.13 38.59
CDY71578 Canola nucleus, plastid 31.21 38.58
PGSC0003DMT400022997 Potato cytosol, plastid 45.5 38.5
Solyc10g086530.1.1 Tomato cytosol 45.5 38.5
KRG99969 Soybean cytosol 43.94 38.4
AT2G29065.1 Thale cress cytosol, nucleus, plastid 37.42 38.25
KRH49113 Soybean cytosol 43.48 38.15
Solyc09g010920.1.1 Tomato cytosol 45.03 38.11
CDX82987 Canola nucleus 35.56 38.1
CDY39530 Canola cytosol 36.49 37.96
PGSC0003DMT400078286 Potato nucleus 39.29 37.93
PGSC0003DMT400016258 Potato cytosol 42.86 37.91
Bra000012.1-P Field mustard cytosol, nucleus, peroxisome 39.6 37.89
CDY07777 Canola cytosol, nucleus, peroxisome 39.6 37.89
CDY47877 Canola nucleus 36.34 37.86
CDX79750 Canola peroxisome 39.6 37.83
Bra028391.1-P Field mustard nucleus 36.34 37.74
CDY33040 Canola nucleus 34.94 37.69
KRH23094 Soybean cytosol 32.3 37.61
KRH23095 Soybean cytosol 38.35 37.6
AT2G37650.1 Thale cress cytosol 41.77 37.47
AT5G59450.1 Thale cress nucleus 35.4 37.38
CDX86475 Canola nucleus 41.15 37.32
VIT_13s0019g01710.t01 Wine grape cytosol 42.08 37.28
HORVU3Hr1G012550.6 Barley cytosol 34.47 37.25
HORVU4Hr1G027520.2 Barley cytosol, peroxisome 37.73 37.21
KRH24775 Soybean cytosol 39.13 37.06
VIT_13s0019g01790.t01 Wine grape cytosol 41.3 37.0
VIT_13s0019g01700.t01 Wine grape cytosol 43.48 36.84
KRH29774 Soybean cytosol 35.87 36.61
HORVU5Hr1G045020.29 Barley cytosol 44.72 36.59
HORVU4Hr1G027900.1 Barley cytosol 37.58 36.56
CDY06266 Canola cytosol 35.87 36.55
HORVU5Hr1G020900.1 Barley cytosol 42.24 36.51
Solyc06g076280.1.1 Tomato cytosol 42.39 36.5
VIT_06s0004g04950.t01 Wine grape cytosol 42.55 36.34
PGSC0003DMT400077972 Potato cytosol 42.24 36.17
KRH29775 Soybean nucleus 37.73 36.11
Solyc05g053090.1.1 Tomato cytosol 41.61 36.07
HORVU4Hr1G027610.1 Barley cytosol 37.89 36.04
KRH29779 Soybean cytosol 41.46 35.98
PGSC0003DMT400069949 Potato cytosol 41.46 35.74
HORVU3Hr1G086210.1 Barley cytosol, nucleus, plasma membrane 43.63 35.52
Bra030688.1-P Field mustard nucleus 40.68 35.26
HORVU4Hr1G080460.5 Barley cytosol 31.83 35.22
Bra031581.1-P Field mustard cytosol 36.34 35.03
KRH23089 Soybean cytosol 34.94 34.94
CDY15616 Canola nucleus 38.66 34.83
KRH23090 Soybean vacuole 33.54 34.78
KRH10243 Soybean nucleus 35.87 34.74
CDX77228 Canola cytosol 36.18 34.67
KRH24778 Soybean nucleus 36.34 34.62
CDY47878 Canola nucleus 37.11 34.59
AT2G29060.1 Thale cress cytosol 37.27 34.58
CDX68388 Canola cytosol 22.2 34.54
KRH23091 Soybean endoplasmic reticulum, plasma membrane 39.6 34.32
AT1G07520.3 Thale cress cytosol 36.96 34.2
HORVU1Hr1G004440.1 Barley cytosol 37.89 33.94
Bra028390.1-P Field mustard cytosol 37.11 33.85
CDY06265 Canola cytosol 36.18 33.77
KRH10241 Soybean cytosol, nucleus, peroxisome 36.02 33.72
AT1G07530.1 Thale cress cytosol 40.22 33.68
Bra031580.1-P Field mustard cytosol 36.02 33.62
Bra035653.1-P Field mustard cytosol 37.58 33.52
CDY31749 Canola cytosol 37.73 33.47
CDY09912 Canola cytosol 36.18 33.29
HORVU4Hr1G027920.1 Barley peroxisome 40.53 32.91
VIT_06s0004g04960.t01 Wine grape nucleus 40.22 32.5
HORVU4Hr1G027480.1 Barley endoplasmic reticulum, extracellular, plasma membrane 35.25 32.11
CDY09911 Canola nucleus 28.88 31.85
HORVU2Hr1G036280.1 Barley cytosol 20.96 24.24
HORVU4Hr1G071670.1 Barley cytosol 19.57 23.51
HORVU5Hr1G099160.1 Barley plastid 20.81 21.27
HORVU2Hr1G043780.1 Barley cytosol 18.79 21.23
HORVU3Hr1G091250.1 Barley cytosol 17.7 20.65
HORVU2Hr1G094040.2 Barley cytosol, plastid 9.94 16.62
Protein Annotations
EnsemblPlants:HORVU5Hr1G113620.1EnsemblPlantsGene:HORVU5Hr1G113620GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR005202InterPro:TF_GRASPANTHER:PTHR31636
PANTHER:PTHR31636:SF23PFAM:PF03514PFscan:PS50985SEG:segUniParc:UPI000295F8E2UniProt:M0VI10
MapMan:15.5.12:::::
Description
No Description!
Coordinates
chrchr5H:+:642237666..642240639
Molecular Weight (calculated)
72140.6 Da
IEP (calculated)
6.559
GRAVY (calculated)
-0.386
Length
644 amino acids
Sequence
(BLAST)
001: MGSCEDVEYG DVFSVPNPAA APAYGLNFSF QQQQLLFPPS AYGFHALPAA DYQPSPPQSA PIGGTPSPVS TTTELGSPEE ASDDAVLAYI NQFLLEDDDD
101: ESSAPAAAAP ARDSALLAVA KPFVDIIADA KPAYQHTSWT NPCRAFAGTG GGSQDMFVSS RQSSCQLVPC DSVKVEEECA VHKGRKNRHG DDDLELEDEQ
201: RRKQLALCEE ETIREMFDKV LLCNGVNCIL QSPLPAEAEI STVYVKGSGN RRGRKKGKTG VPTVEEESVD LTTLLIHCAQ AAAIDDHRGS GELLKQIRRH
301: SSPHGDAGQR LAHYIANGLE ARLAGTGSTV YRSLAARRTS SADMLKIFKL YGTACPFLRM FRFYSNEAIL DAAKGVTSVH ILDYGIDWGF QWPIFLQRIS
401: KRDGGPPRIR ITGIDLPQPG FRPAERLEAT GRRISEYAKM FHVPFEYRAI AAKWDAIRVE DLRIDKDDLL IVNCLFRMRH MMDETVTEES PRMTVLNTIR
501: RMNPHLFIHA VVNGTFNAPF FVTRFKEALF YFSSHFDMLE ATAPPVDEHR QLIEREYFGR EALNVVACEG TERVERPETY KQWQVRNLRA GFRQVPLLQE
601: TVKKARYKVT KSYHKDFFVD EDNKWMLQGW KGRVICALST WKPS
Best Arabidopsis Sequence Match ( AT1G07530.1 )
(BLAST)
001: MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS
Arabidopsis Description
SCL14SCL14 [Source:UniProtKB/TrEMBL;Acc:A0A178WH17]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.