Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 3
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G176700.1 | Wheat | cytosol | 82.74 | 87.71 |
| TraesCS4D01G135900.1 | Wheat | cytosol | 77.93 | 86.36 |
| OQU84120 | Sorghum | nucleus | 46.82 | 52.21 |
| Zm00001d003553_P001 | Maize | cytosol | 43.85 | 51.07 |
| KXG26392 | Sorghum | cytosol | 45.69 | 50.95 |
| HORVU4Hr1G027900.1 | Barley | cytosol | 45.26 | 48.34 |
| KXG29232 | Sorghum | cytosol | 46.11 | 47.94 |
| Zm00001d048600_P001 | Maize | nucleus | 43.42 | 47.6 |
| HORVU4Hr1G027610.1 | Barley | cytosol | 45.54 | 47.56 |
| HORVU4Hr1G027520.2 | Barley | cytosol, peroxisome | 41.3 | 44.72 |
| HORVU4Hr1G080460.5 | Barley | cytosol | 34.79 | 42.27 |
| GSMUA_Achr5P08320_001 | Banana | cytosol | 26.03 | 40.98 |
| HORVU4Hr1G027920.1 | Barley | peroxisome | 45.69 | 40.73 |
| HORVU5Hr1G020900.1 | Barley | cytosol | 42.43 | 40.27 |
| HORVU3Hr1G012520.1 | Barley | cytosol | 24.75 | 38.38 |
| HORVU5Hr1G113620.1 | Barley | cytosol, nucleus, peroxisome | 32.11 | 35.25 |
| HORVU3Hr1G086210.1 | Barley | cytosol, nucleus, plasma membrane | 36.63 | 32.74 |
| HORVU3Hr1G012550.6 | Barley | cytosol | 27.44 | 32.55 |
| HORVU5Hr1G045020.29 | Barley | cytosol | 35.64 | 32.02 |
| HORVU1Hr1G004440.1 | Barley | cytosol | 29.56 | 29.07 |
| HORVU2Hr1G036280.1 | Barley | cytosol | 21.22 | 26.93 |
| HORVU4Hr1G071670.1 | Barley | cytosol | 18.67 | 24.63 |
| HORVU2Hr1G043780.1 | Barley | cytosol | 19.24 | 23.86 |
| HORVU5Hr1G099160.1 | Barley | plastid | 21.07 | 23.65 |
| HORVU3Hr1G091250.1 | Barley | cytosol | 18.1 | 23.19 |
| HORVU2Hr1G094040.2 | Barley | cytosol, plastid | 9.62 | 17.66 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G027480.1 | EnsemblPlantsGene:HORVU4Hr1G027480 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS | ncoils:Coil |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF27 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | UniParc:UPI000B4624EF |
| UniProt:A0A287NN95 | MapMan:15.5.12 | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:169007327..169009840
Molecular Weight (calculated)
79511.0 Da
IEP (calculated)
6.599
GRAVY (calculated)
-0.265
Length
707 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTIDSNLLY DVLLVSFTWN GWMTVTYPLQ IQYIFTAPSE ISVHSTMSAT PEELLGIAEP APLSPSAFLD LPPTPTTHVD SQQSHNNLTL EYISRMLTEE
101: GIVDKFFYQY PDHPKLLQAQ QPFAEILADT SSDAHESFAS STSILMPSQG NSTDIMVSGS QVQYPAFFLN GTGACTVVPS SMVFPIPGES STRTDMLSNM
201: AFFKGMEEAN RFLPADNAMV DGRGRKKRSG FGMDGETEAG LWRSSKQITA LPHSVSDSEE EDEATALEML DRLVLNGYDT YPGEIQEAVR VRVTSEEEKE
301: NKATLGRRGT GRRRARHTVV TDLETLLIRC AEAVSSNDVR GASKLLERIK WHSSPTGDAR QRLSHYFAQG LEARLAGTGS RLYRALMGKR TSTVELIKAF
401: HLHMAVCCSI KVGLLFAINT IYKAVAGRRT LHIVHYGITT GFQWPDLLRL LANREGGPPE VRITGINTPR PGLRPAQLMD EAGYRLSNYA RQFGVPFKFR
501: AIASKLEDVR VEDLHIDPDE VLVVNSLFEF RTLMDESLTF DMVSPRDMVL NNISKMKPTV FVQSLVNGPY SAAFFMTRFR HALYYFTALF DVMETTVPWD
601: NDKRLLVERD ILARSAINMI ACEGADRVER PQNYKEWQAR NQRAGLRQLP LDPDVVVMLK DEVKSRYHKH FMISEDHRWL LQGWKGRVLY AHSTWAAHNA
701: TASQVID
101: GIVDKFFYQY PDHPKLLQAQ QPFAEILADT SSDAHESFAS STSILMPSQG NSTDIMVSGS QVQYPAFFLN GTGACTVVPS SMVFPIPGES STRTDMLSNM
201: AFFKGMEEAN RFLPADNAMV DGRGRKKRSG FGMDGETEAG LWRSSKQITA LPHSVSDSEE EDEATALEML DRLVLNGYDT YPGEIQEAVR VRVTSEEEKE
301: NKATLGRRGT GRRRARHTVV TDLETLLIRC AEAVSSNDVR GASKLLERIK WHSSPTGDAR QRLSHYFAQG LEARLAGTGS RLYRALMGKR TSTVELIKAF
401: HLHMAVCCSI KVGLLFAINT IYKAVAGRRT LHIVHYGITT GFQWPDLLRL LANREGGPPE VRITGINTPR PGLRPAQLMD EAGYRLSNYA RQFGVPFKFR
501: AIASKLEDVR VEDLHIDPDE VLVVNSLFEF RTLMDESLTF DMVSPRDMVL NNISKMKPTV FVQSLVNGPY SAAFFMTRFR HALYYFTALF DVMETTVPWD
601: NDKRLLVERD ILARSAINMI ACEGADRVER PQNYKEWQAR NQRAGLRQLP LDPDVVVMLK DEVKSRYHKH FMISEDHRWL LQGWKGRVLY AHSTWAAHNA
701: TASQVID
001: MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS
Arabidopsis Description
SCL14SCL14 [Source:UniProtKB/TrEMBL;Acc:A0A178WH17]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.