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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 2
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, plastid
iPSORT:plastid
MultiLoc:cytosol
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G001280.1
HORVU2Hr1G016740.4
HORVU3Hr1G038010.1
HORVU3Hr1G079210.4
HORVU4Hr1G026290.3
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G04890.1 HORVU0Hr1G001280.1 AT2G41100.1 17360592
AT2G04890.1 HORVU2Hr1G016740.4 AT2G41100.1 17360592
AT2G04890.1 HORVU3Hr1G038010.1 AT2G41100.1 17360592
AT2G04890.1 HORVU3Hr1G079210.4 AT2G41100.1 17360592
AT2G04890.1 HORVU4Hr1G026290.3 AT2G41100.1 17360592
AT2G04890.1 HORVU5Hr1G014060.1 AT2G41100.1 17360592
AT2G04890.1 HORVU5Hr1G014070.2 AT2G41100.1 17360592
AT2G04890.1 HORVU5Hr1G044710.4 AT2G41100.1 17360592
AT2G04890.1 HORVU0Hr1G001280.1 AT5G21274.1 17360592
AT2G04890.1 HORVU2Hr1G016740.4 AT5G21274.1 17360592
AT2G04890.1 HORVU3Hr1G038010.1 AT5G21274.1 17360592
AT2G04890.1 HORVU3Hr1G079210.4 AT5G21274.1 17360592
AT2G04890.1 HORVU4Hr1G026290.3 AT5G21274.1 17360592
AT2G04890.1 HORVU5Hr1G014060.1 AT5G21274.1 17360592
AT2G04890.1 HORVU5Hr1G014070.2 AT5G21274.1 17360592
AT2G04890.1 HORVU5Hr1G044710.4 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G198200.1 Wheat cytosol 96.59 96.94
TraesCS2B01G217500.1 Wheat cytosol 96.23 96.75
TraesCS2A01G189600.1 Wheat cytosol 95.87 96.39
Os07t0583600-01 Rice plasma membrane 84.2 86.21
EER97449 Sorghum cytosol 80.25 81.72
Zm00001d006701_P001 Maize cytosol 79.89 80.32
Zm00001d021946_P001 Maize cytosol 76.84 76.7
GSMUA_Achr4P07010_001 Banana cytosol 40.93 69.51
Bra026077.1-P Field mustard cytosol 36.09 68.37
Bra015156.1-P Field mustard cytosol 36.45 63.84
GSMUA_Achr4P11050_001 Banana nucleus 43.63 61.21
CDY71156 Canola cytosol, plastid 41.65 59.49
CDY00883 Canola cytosol 43.09 59.26
CDY07309 Canola cytosol 25.49 59.17
VIT_12s0057g00560.t01 Wine grape cytosol 57.81 59.08
KRH74015 Soybean cytosol 57.27 58.96
GSMUA_AchrUn_... Banana nucleus 45.06 58.64
KRH14104 Soybean cytosol 57.27 58.53
AT2G04890.1 Thale cress cytosol 43.27 58.35
PGSC0003DMT400015696 Potato cytosol 55.66 57.94
CDY37124 Canola nucleus 43.63 57.86
CDY22807 Canola nucleus 43.63 57.86
VIT_19s0090g01740.t01 Wine grape cytosol 56.37 57.61
Solyc07g047950.1.1 Tomato mitochondrion 56.19 57.43
AT5G48150.4 Thale cress cytosol 49.91 56.73
CDY05700 Canola cytosol, plastid 50.27 56.34
CDY19966 Canola cytosol 49.91 56.28
CDY00074 Canola cytosol, plastid 50.09 56.14
CDY71174 Canola cytosol, plastid 49.91 55.94
Bra020715.1-P Field mustard cytosol, plastid 49.91 55.94
Bra036185.1-P Field mustard cytosol 49.55 55.76
CDX86324 Canola cytosol, nucleus, plastid 49.73 55.73
CDY54511 Canola cytosol, nucleus, plastid 49.55 55.53
Bra018860.1-P Field mustard nucleus 51.71 54.86
Solyc07g065270.1.1 Tomato nucleus 52.6 54.46
PGSC0003DMT400057111 Potato nucleus 52.42 54.38
HORVU4Hr1G071670.1 Barley cytosol 52.06 54.1
PGSC0003DMT400034763 Potato cytosol 50.27 52.43
PGSC0003DMT400060553 Potato cytosol 49.01 52.1
VIT_00s0463g00020.t01 Wine grape nucleus 50.81 51.93
KRH11548 Soybean nucleus 51.35 51.81
KRG98562 Soybean nucleus 50.63 51.74
Solyc11g012510.1.1 Tomato mitochondrion 50.27 51.66
KRH51175 Soybean cytosol 49.91 51.29
KRH14274 Soybean cytosol 50.09 51.19
KRH36572 Soybean cytosol 50.27 51.09
KRH73868 Soybean cytosol 49.91 51.01
KRH46306 Soybean cytosol 49.55 50.64
KRH01979 Soybean cytosol 49.01 50.09
Solyc04g014830.1.1 Tomato mitochondrion 49.19 49.55
CDY58168 Canola plastid 45.96 48.3
Bra021063.1-P Field mustard plastid 45.96 48.3
PGSC0003DMT400021748 Potato nucleus 48.47 48.3
CDY50128 Canola cytosol, plastid 46.14 48.22
CDY35589 Canola cytosol 45.96 48.21
AT1G50600.2 Thale cress golgi, mitochondrion 51.71 47.92
Bra026237.1-P Field mustard plastid 45.6 47.48
CDY42968 Canola cytosol 45.6 47.48
AT4G17230.1 Thale cress cytosol 45.06 47.45
HORVU5Hr1G099160.1 Barley plastid 53.32 47.14
KRH38269 Soybean cytosol 27.83 43.91
HORVU2Hr1G043780.1 Barley cytosol 44.52 43.51
HORVU3Hr1G091250.1 Barley cytosol 38.6 38.95
Solyc05g054170.2.1 Tomato mitochondrion, nucleus 20.65 34.53
HORVU3Hr1G012520.1 Barley cytosol 22.44 27.41
HORVU4Hr1G027900.1 Barley cytosol 26.21 22.05
HORVU3Hr1G012550.6 Barley cytosol 23.34 21.81
HORVU4Hr1G080460.5 Barley cytosol 22.62 21.65
HORVU2Hr1G094040.2 Barley cytosol, plastid 14.72 21.3
HORVU4Hr1G027480.1 Barley endoplasmic reticulum, extracellular, plasma membrane 26.93 21.22
HORVU4Hr1G027610.1 Barley cytosol 25.67 21.12
HORVU5Hr1G113620.1 Barley cytosol, nucleus, peroxisome 24.24 20.96
HORVU1Hr1G004440.1 Barley cytosol 25.13 19.47
HORVU5Hr1G020900.1 Barley cytosol 26.03 19.46
HORVU4Hr1G027520.2 Barley cytosol, peroxisome 22.62 19.3
HORVU3Hr1G086210.1 Barley cytosol, nucleus, plasma membrane 26.03 18.33
HORVU5Hr1G045020.29 Barley cytosol 25.49 18.04
HORVU4Hr1G027920.1 Barley peroxisome 25.13 17.65
Protein Annotations
EnsemblPlants:HORVU2Hr1G036280.1EnsemblPlantsGene:HORVU2Hr1G036280GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:CIGR2InterPro:IPR005202InterPro:TF_GRAS
PANTHER:PTHR31636PANTHER:PTHR31636:SF31PFAM:PF03514PFscan:PS50985SEG:segUniParc:UPI000B463172
UniProt:A0A287HPX7MapMan:15.5.12::::
Description
No Description!
Coordinates
chrchr2H:-:160352129..160355538
Molecular Weight (calculated)
61670.2 Da
IEP (calculated)
6.676
GRAVY (calculated)
-0.367
Length
557 amino acids
Sequence
(BLAST)
001: MADTPTSRMI HPFSNMQRQN PKQFQFQYPD NPRHPCHPYQ PSPDTHVVPQ HHYSLKSHSS DASYENHVAQ MKHTLVDSSA AAGCMRHDSP SSHSFTPPSI
101: RSGSGSPSSH DDSHSDSTDG SPVSASCVTV TTEDPNDLKQ KLKDLEAEML GPDAAEIVNS LESSVAKQLS LEPEKWAQMM DFPRGNLKEL LLACARAVEE
201: KNMYAVDVMV PELRKMVSVS GTPLERLGAY MVEGLVARLA SSGHSIYKAL RCKEPKSSDL LSYMHFLYEA CPYFKFGYMS ANGAIAEAVK GEDRIHIIDF
301: HIAQGAQWIS LLQALAARPG GPPTVRITGI DDSVSAYARG GGLDLVGRRL SHIAGLCKVP FEFRSVAMAG EEVEEGHLGV VPGEALAVNF TLELHHIPDE
401: TVSTANHRDR ILRLVKGLRP KVLTLVEQES NTNTAPFPQR FAETLDYYTA IFESIDLTLP RDDRERVNME QHCLAREVVN LIACEGAERV ERHEVFGKWK
501: ARLTMAGFRP SPLSSLVNAT ISKLLQSYSD NYKLAERDGA LYLGWKKRPL VVSSAWH
Best Arabidopsis Sequence Match ( AT5G48150.3 )
(BLAST)
001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK
Arabidopsis Description
PAT1Scarecrow-like transcription factor PAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDL7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.