Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400046278 | Potato | cytosol | 24.89 | 71.43 |
| Bra025438.1-P | Field mustard | cytosol | 35.75 | 69.91 |
| PGSC0003DMT400054299 | Potato | cytosol | 35.75 | 69.91 |
| KRH18664 | Soybean | cytosol | 40.72 | 64.29 |
| AT5G21274.1 | Thale cress | cytosol | 42.53 | 63.09 |
| CDY04474 | Canola | cytosol | 42.08 | 62.42 |
| CDY56411 | Canola | cytosol | 42.08 | 62.42 |
| KRG94975 | Soybean | nucleus | 42.08 | 62.42 |
| Bra020155.1-P | Field mustard | cytosol | 42.08 | 62.42 |
| Bra019453.1-P | Field mustard | cytosol | 42.08 | 62.42 |
| PGSC0003DMT400018569 | Potato | cytosol | 42.08 | 62.42 |
| Bra012037.1-P | Field mustard | cytosol | 42.08 | 62.42 |
| Bra006595.1-P | Field mustard | cytosol | 42.08 | 62.42 |
| PGSC0003DMT400058435 | Potato | cytosol | 42.08 | 62.42 |
| Bra002368.1-P | Field mustard | cytosol | 42.08 | 62.42 |
| PGSC0003DMT400070437 | Potato | cytosol | 42.08 | 62.42 |
| Solyc01g008950.2.1 | Tomato | nucleus | 42.08 | 62.42 |
| Solyc10g077010.1.1 | Tomato | cytosol | 42.08 | 62.42 |
| Solyc10g081170.1.1 | Tomato | extracellular | 42.08 | 62.42 |
| Solyc11g072240.1.1 | Tomato | cytosol | 42.08 | 62.42 |
| Solyc12g099990.1.1 | Tomato | nucleus | 42.08 | 62.42 |
| VIT_08s0040g00470.t01 | Wine grape | cytosol | 42.08 | 62.42 |
| Zm00001d052415_P001 | Maize | cytosol | 44.34 | 62.03 |
| CDY65072 | Canola | cytosol | 41.63 | 61.74 |
| Bra014671.1-P | Field mustard | cytosol | 41.63 | 61.74 |
| Bra003251.1-P | Field mustard | cytosol | 41.63 | 61.74 |
| Bra000214.1-P | Field mustard | cytosol | 41.63 | 61.74 |
| AT3G56800.1 | Thale cress | cytosol | 41.63 | 61.74 |
| PGSC0003DMT400014123 | Potato | mitochondrion | 33.94 | 61.48 |
| CDX92401 | Canola | cytosol | 37.1 | 61.19 |
| CDX96148 | Canola | cytosol | 41.18 | 61.07 |
| Bra007269.1-P | Field mustard | cytosol | 41.18 | 61.07 |
| Bra004166.1-P | Field mustard | cytosol | 41.18 | 61.07 |
| CDY55678 | Canola | cytosol | 41.18 | 61.07 |
| CDX99690 | Canola | cytosol | 41.18 | 61.07 |
| VIT_06s0009g01910.t01 | Wine grape | cytosol | 42.08 | 60.78 |
| CDY12321 | Canola | cytosol | 39.82 | 60.69 |
| Bra034981.1-P | Field mustard | cytosol | 39.82 | 60.69 |
| CDY27651 | Canola | cytosol | 40.72 | 60.0 |
| Zm00001d005003_P002 | Maize | cytosol | 47.96 | 58.89 |
| CDX75970 | Canola | cytosol | 30.32 | 58.77 |
| EES09201 | Sorghum | cytosol | 47.51 | 58.33 |
| AT1G66410.2 | Thale cress | cytosol | 41.18 | 57.23 |
| AT2G41110.2 | Thale cress | cytosol | 41.63 | 57.14 |
| HORVU5Hr1G044710.4 | Barley | cytosol | 46.15 | 56.67 |
| TraesCS4B01G131100.1 | Wheat | cytosol | 58.82 | 56.28 |
| TraesCS4D01G126100.1 | Wheat | cytosol | 57.47 | 52.7 |
| PGSC0003DMT400097662 | Potato | cytosol, mitochondrion | 41.18 | 52.6 |
| AT5G37780.3 | Thale cress | cytosol | 41.18 | 52.0 |
| CDY48191 | Canola | cytosol | 42.08 | 51.96 |
| Bra034317.1-P | Field mustard | cytosol | 42.08 | 51.96 |
| CDX77060 | Canola | cytosol | 42.08 | 51.67 |
| KRG89812 | Soybean | cytosol, mitochondrion | 38.01 | 50.91 |
| AT2G27030.3 | Thale cress | cytosol | 41.63 | 50.83 |
| HORVU3Hr1G079210.4 | Barley | cytosol | 42.08 | 50.54 |
| HORVU3Hr1G038010.1 | Barley | cytosol, plastid | 43.89 | 48.74 |
| Os01t0810300-01 | Rice | plasma membrane | 40.72 | 48.13 |
| HORVU5Hr1G014070.2 | Barley | cytosol | 35.75 | 47.59 |
| CDY57144 | Canola | cytosol | 29.41 | 44.52 |
| CDY30947 | Canola | cytosol | 42.08 | 44.5 |
| HORVU2Hr1G016740.4 | Barley | cytosol | 42.99 | 44.19 |
| AT3G43810.2 | Thale cress | cytosol | 42.08 | 43.46 |
| CDY21220 | Canola | cytosol | 41.63 | 41.63 |
| HORVU5Hr1G014060.1 | Barley | cytosol, plastid | 37.56 | 38.78 |
| AT2G41090.1 | Thale cress | cytosol | 29.41 | 34.03 |
| HORVU2Hr1G030640.1 | Barley | cytosol | 25.79 | 33.73 |
| HORVU0Hr1G001280.1 | Barley | cytosol | 22.62 | 33.11 |
| HORVU7Hr1G113200.1 | Barley | cytosol | 24.43 | 29.83 |
| HORVU1Hr1G080000.3 | Barley | cytosol | 24.43 | 28.88 |
| HORVU7Hr1G075240.1 | Barley | cytosol, plastid | 23.98 | 27.18 |
| HORVU3Hr1G052770.1 | Barley | cytosol | 26.24 | 23.48 |
| HORVU1Hr1G050720.2 | Barley | cytosol | 26.24 | 22.22 |
| AT2G41100.1 | Thale cress | cytosol | 28.51 | 19.44 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G026290.3 | EnsemblPlantsGene:HORVU4Hr1G026290 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR23050 | PANTHER:PTHR23050:SF165 |
| PFAM:PF13499 | PFAM:PF13833 | PFscan:PS50222 | ScanProsite:PS00018 | SEG:seg | SMART:SM00054 |
| SUPFAM:SSF47473 | UniParc:UPI000B47C71A | UniProt:A0A287NM40 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chrchr4H:+:157489586..157490644
Molecular Weight (calculated)
24629.0 Da
IEP (calculated)
4.342
GRAVY (calculated)
-0.500
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: WMSCPRSRST SFGRPSASSI RMETVIPSSS IRSPSGRIDF DPVGALNPIR FDLFRARKPT GTITAKELGT VMRSLGQRPS EEELREMIAE VDADGNGVVD
101: FSEFLVLLDR KMRGADAEDE LREAFRVFDQ DQNGFISLDE FRHVMDNLGE RLSDEELKEM LREADLDGDG QINYSEFARV MMAKSDGLDG IKTIGAAALQ
201: EWSPGLPLPS GLPDYGDRPE Y
101: FSEFLVLLDR KMRGADAEDE LREAFRVFDQ DQNGFISLDE FRHVMDNLGE RLSDEELKEM LREADLDGDG QINYSEFARV MMAKSDGLDG IKTIGAAALQ
201: EWSPGLPLPS GLPDYGDRPE Y
001: MADQLTDEQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMAKKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVEEMIREAD VDGDGQINYE EFVKIMMAK
101: ISAAELRHVM TNLGEKLTDE EVEEMIREAD VDGDGQINYE EFVKIMMAK
Arabidopsis Description
CAM4Calmodulin 4 [Source:UniProtKB/TrEMBL;Acc:F4IEU4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.