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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
MultiLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G001280.1
HORVU2Hr1G016740.4
HORVU3Hr1G038010.1
HORVU3Hr1G079210.4
HORVU4Hr1G006660.1
HORVU4Hr1G026290.3
HORVU4Hr1G061550.1
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4
HORVU6Hr1G079810.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G23810.1 HORVU0Hr1G001280.1 AT2G41090.1 17360592
AT4G23810.1 HORVU2Hr1G016740.4 AT2G41090.1 17360592
AT4G23810.1 HORVU3Hr1G038010.1 AT2G41090.1 17360592
AT4G23810.1 HORVU3Hr1G079210.4 AT2G41090.1 17360592
AT4G23810.1 HORVU4Hr1G026290.3 AT2G41090.1 17360592
AT4G23810.1 HORVU5Hr1G014060.1 AT2G41090.1 17360592
AT4G23810.1 HORVU5Hr1G014070.2 AT2G41090.1 17360592
AT4G23810.1 HORVU5Hr1G044710.4 AT2G41090.1 17360592
AT4G23810.1 HORVU0Hr1G001280.1 AT2G41100.1 17360592
AT4G23810.1 HORVU2Hr1G016740.4 AT2G41100.1 17360592
AT4G23810.1 HORVU3Hr1G038010.1 AT2G41100.1 17360592
AT4G23810.1 HORVU3Hr1G079210.4 AT2G41100.1 17360592
AT4G23810.1 HORVU4Hr1G026290.3 AT2G41100.1 17360592
AT4G23810.1 HORVU5Hr1G014060.1 AT2G41100.1 17360592
AT4G23810.1 HORVU5Hr1G014070.2 AT2G41100.1 17360592
AT4G23810.1 HORVU5Hr1G044710.4 AT2G41100.1 17360592
AT4G23810.1 HORVU4Hr1G006660.1 AT4G08500.1 17587183
AT4G23810.1 HORVU4Hr1G061550.1 AT4G08500.1 17587183
AT4G23810.1 HORVU6Hr1G079810.1 AT4G08500.1 17587183
AT4G23810.1 HORVU0Hr1G001280.1 AT5G21274.1 17360592
AT4G23810.1 HORVU2Hr1G016740.4 AT5G21274.1 17360592
AT4G23810.1 HORVU3Hr1G038010.1 AT5G21274.1 17360592
AT4G23810.1 HORVU3Hr1G079210.4 AT5G21274.1 17360592
AT4G23810.1 HORVU4Hr1G026290.3 AT5G21274.1 17360592
AT4G23810.1 HORVU5Hr1G014060.1 AT5G21274.1 17360592
AT4G23810.1 HORVU5Hr1G014070.2 AT5G21274.1 17360592
AT4G23810.1 HORVU5Hr1G044710.4 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3D01G238300.1 Wheat nucleus 79.1 66.32
HORVU3Hr1G059220.1 Barley nucleus 83.61 66.23
Os01t0656400-00 Rice nucleus 51.64 45.99
Zm00001d011496_P002 Maize nucleus 54.51 40.67
EES03370 Sorghum nucleus 56.97 40.17
HORVU1Hr1G090170.1 Barley nucleus 37.7 37.25
Zm00001d044010_P001 Maize nucleus 50.82 37.01
HORVU1Hr1G090110.1 Barley nucleus 38.11 36.76
HORVU1Hr1G090130.4 Barley nucleus 38.93 36.54
HORVU1Hr1G090190.2 Barley nucleus 37.3 35.83
GSMUA_Achr3P15840_001 Banana nucleus 33.2 32.53
HORVU2Hr1G029430.2 Barley mitochondrion, nucleus 27.05 27.05
AT4G23810.1 Thale cress nucleus 34.84 26.23
CDY03518 Canola nucleus 33.61 26.03
VIT_15s0046g01140.t01 Wine grape nucleus 34.43 26.01
Bra013732.1-P Field mustard nucleus 33.61 25.95
CDY47621 Canola nucleus 33.2 25.63
HORVU0Hr1G012740.1 Barley nucleus 33.61 25.39
CDY65042 Canola nucleus 34.02 25.15
CDX94221 Canola nucleus 32.79 24.92
AT4G11070.1 Thale cress nucleus 31.97 24.92
Bra019265.1-P Field mustard nucleus 32.79 24.77
HORVU5Hr1G034830.3 Barley nucleus 33.61 24.7
CDY25271 Canola nucleus 33.2 24.47
Bra033158.1-P Field mustard nucleus 33.2 24.47
GSMUA_Achr3P25080_001 Banana nucleus 33.2 24.4
VIT_02s0025g01280.t01 Wine grape nucleus 34.02 24.27
CDY10969 Canola nucleus 31.97 24.15
Solyc10g009550.2.1 Tomato nucleus 28.69 24.14
KRH41300 Soybean nucleus 34.43 23.4
PGSC0003DMT400031695 Potato nucleus 32.38 23.3
Solyc08g082110.2.1 Tomato nucleus 32.38 23.3
HORVU4Hr1G051970.1 Barley nucleus 11.89 23.2
PGSC0003DMT400051194 Potato nucleus 27.46 23.1
Bra026467.1-P Field mustard nucleus 29.1 22.76
KRH77637 Soybean nucleus 29.92 22.67
VIT_16s0050g02510.t01 Wine grape nucleus 33.61 22.53
KRH60029 Soybean nucleus 33.2 22.31
CDX87141 Canola nucleus 28.28 22.12
KRH68901 Soybean nucleus 32.79 22.1
Solyc05g050310.1.1 Tomato cytosol, nucleus 5.33 22.03
KRG97154 Soybean nucleus 32.38 21.82
Solyc03g007380.1.1 Tomato nucleus 31.56 21.81
CDY19847 Canola nucleus 27.87 21.79
PGSC0003DMT400014949 Potato nucleus 31.97 21.67
AT5G24110.1 Thale cress nucleus 26.64 21.45
CDX80414 Canola nucleus 27.46 21.41
PGSC0003DMT400000599 Potato nucleus 30.33 21.39
PGSC0003DMT400023502 Potato nucleus 31.15 21.35
CDX83367 Canola nucleus 24.18 21.22
KRH64503 Soybean nucleus 31.56 21.15
Bra000423.1-P Field mustard nucleus 24.18 21.0
KRH53440 Soybean nucleus 31.15 20.88
HORVU5Hr1G056130.2 Barley nucleus 33.2 20.66
Solyc08g008280.2.1 Tomato nucleus 30.33 20.56
Solyc01g095630.2.1 Tomato nucleus 28.28 20.54
CDX88077 Canola nucleus 26.23 20.45
Bra009734.1-P Field mustard nucleus 26.23 20.45
CDX89127 Canola nucleus 22.95 20.22
Bra014426.1-P Field mustard nucleus 22.95 20.22
Solyc05g050330.2.1 Tomato nucleus 20.08 20.08
CDX95699 Canola nucleus 23.36 20.0
CDY42043 Canola nucleus 23.77 19.8
Bra004540.1-P Field mustard nucleus 22.95 19.65
CDX80015 Canola nucleus 23.77 19.59
KRH47935 Soybean nucleus 29.51 19.51
AT2G46400.1 Thale cress nucleus 23.36 19.32
KRH06499 Soybean nucleus 29.51 19.3
HORVU3Hr1G058670.1 Barley nucleus 18.85 18.47
HORVU3Hr1G080980.1 Barley nucleus 18.44 18.37
Solyc05g050300.1.1 Tomato nucleus 14.34 17.95
PGSC0003DMT400046351 Potato nucleus 22.13 17.94
HORVU0Hr1G030830.1 Barley nucleus, plastid 20.08 17.5
HORVU0Hr1G012750.1 Barley nucleus 23.77 17.47
PGSC0003DMT400084227 Potato nucleus 20.49 17.01
HORVU3Hr1G080860.1 Barley nucleus 17.62 16.8
HORVU6Hr1G013890.3 Barley nucleus 15.16 16.74
HORVU1Hr1G069620.7 Barley nucleus 20.49 16.67
HORVU1Hr1G069610.1 Barley nucleus 19.26 16.26
PGSC0003DMT400084214 Potato nucleus 21.72 16.01
HORVU7Hr1G083270.2 Barley nucleus 20.08 15.91
Solyc05g050340.2.1 Tomato nucleus 20.9 15.6
CDX80415 Canola nucleus 9.43 15.54
HORVU2Hr1G006600.1 Barley nucleus 20.08 15.26
HORVU3Hr1G081000.3 Barley plastid 12.3 15.15
HORVU2Hr1G109330.1 Barley mitochondrion, nucleus, vacuole 20.08 15.08
HORVU0Hr1G023420.1 Barley nucleus, plastid 19.26 15.06
HORVU1Hr1G069640.2 Barley nucleus 18.03 15.02
HORVU3Hr1G081030.3 Barley nucleus 19.67 15.0
HORVU4Hr1G050320.2 Barley nucleus 17.62 14.43
HORVU4Hr1G052010.2 Barley nucleus 11.89 14.08
HORVU3Hr1G080890.1 Barley nucleus, plastid, vacuole 16.8 13.95
HORVU7Hr1G075960.1 Barley nucleus, plastid 15.16 12.63
HORVU2Hr1G017740.3 Barley nucleus 17.62 12.36
HORVU2Hr1G017720.1 Barley nucleus, plastid 18.44 12.23
HORVU3Hr1G080960.1 Barley nucleus 17.62 11.94
HORVU4Hr1G022970.2 Barley nucleus, plastid 13.52 11.83
Protein Annotations
MapMan:15.5.22Gene3D:2.20.25.80UniProt:A0A287L883ncoils:CoilGO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0043565EnsemblPlantsGene:HORVU3Hr1G059210EnsemblPlants:HORVU3Hr1G059210.1InterPro:IPR003657
InterPro:IPR036576PFAM:PF03106PFscan:PS50811PANTHER:PTHR32096PANTHER:PTHR32096:SF52SMART:SM00774
SUPFAM:SSF118290UniParc:UPI000B46FBF6InterPro:WRKY_domInterPro:WRKY_dom_sfSEG:seg:
Description
No Description!
Coordinates
chrchr3H:-:447808997..447810086
Molecular Weight (calculated)
22742.8 Da
IEP (calculated)
8.168
GRAVY (calculated)
-0.528
Length
244 amino acids
Sequence
(BLAST)
001: MEQRCALATE LAQVLDTVRQ LEAHMGVKGG ADGGETCRAL VSSMRSSVDR SIHIAMSSCC VEGRVLGAPE SPPSADGSPR SGGSDQAADS PCRGAHAAGQ
101: SKKRKTLPKW STQVRVNSVE DVGPLDDGFS WRKYGQKDIL GAMYPKAYFR CTHRHTQGCY ASKQVQRAHG DPLLFDVVYH GNHTCAQGKH CNSQRPQPAA
201: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXEEIPFE QIPH
Best Arabidopsis Sequence Match ( AT4G11070.2 )
(BLAST)
001: MEMMNWERRS LLNELIHGLK AAKQLQAILM LNGSTTQHNP TIELAPDPLA HPGKVPGSPA SITGNPRSEE FFNVRSKEFN LSSKKRKMLP KWTEQVRISP
101: ERGLEGPHDD IFSWRKYGQK DILGAKFPRS YYRCTFRNTQ YCWATKQVQR SDGDPTIFEV TYRGTHTCSQ GIPLPEKRET KPKHTVAVNY QNLRASLTVR
201: TGGLGSEAFS FPVTSPLYTY ESINGGGTFY HHVGSSGPSD FTGLISTNTS TGSSPIFDVN FQFDPTAEIN TGFPTFFHNS I
Arabidopsis Description
WRKY41Probable WRKY transcription factor 41 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0Y8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.