Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G328300.1 | Wheat | cytosol | 96.2 | 97.25 |
| TraesCS3A01G335000.1 | Wheat | cytosol | 95.11 | 96.15 |
| Bra025438.1-P | Field mustard | cytosol | 58.15 | 94.69 |
| CDX92401 | Canola | cytosol | 68.48 | 94.03 |
| CDY04474 | Canola | cytosol | 76.09 | 93.96 |
| PGSC0003DMT400058435 | Potato | cytosol | 76.09 | 93.96 |
| CDY56411 | Canola | cytosol | 76.09 | 93.96 |
| Bra019453.1-P | Field mustard | cytosol | 76.09 | 93.96 |
| Solyc01g008950.2.1 | Tomato | nucleus | 76.09 | 93.96 |
| Bra012037.1-P | Field mustard | cytosol | 76.09 | 93.96 |
| PGSC0003DMT400046278 | Potato | cytosol | 39.13 | 93.51 |
| Bra006595.1-P | Field mustard | cytosol | 75.54 | 93.29 |
| CDX96148 | Canola | cytosol | 75.54 | 93.29 |
| Solyc11g072240.1.1 | Tomato | cytosol | 75.54 | 93.29 |
| Solyc12g099990.1.1 | Tomato | nucleus | 75.54 | 93.29 |
| Bra020155.1-P | Field mustard | cytosol | 75.54 | 93.29 |
| Solyc10g077010.1.1 | Tomato | cytosol | 75.54 | 93.29 |
| Bra004166.1-P | Field mustard | cytosol | 75.54 | 93.29 |
| Bra002368.1-P | Field mustard | cytosol | 75.54 | 93.29 |
| PGSC0003DMT400070437 | Potato | cytosol | 75.54 | 93.29 |
| AT5G21274.1 | Thale cress | cytosol | 75.54 | 93.29 |
| PGSC0003DMT400018569 | Potato | cytosol | 75.54 | 93.29 |
| PGSC0003DMT400054299 | Potato | cytosol | 57.07 | 92.92 |
| KRG94975 | Soybean | nucleus | 75.0 | 92.62 |
| CDY55678 | Canola | cytosol | 75.0 | 92.62 |
| Solyc10g081170.1.1 | Tomato | extracellular | 75.0 | 92.62 |
| CDY65072 | Canola | cytosol | 75.0 | 92.62 |
| VIT_08s0040g00470.t01 | Wine grape | cytosol | 75.0 | 92.62 |
| CDY27651 | Canola | cytosol | 75.0 | 92.0 |
| Bra014671.1-P | Field mustard | cytosol | 74.46 | 91.95 |
| Bra003251.1-P | Field mustard | cytosol | 74.46 | 91.95 |
| Bra000214.1-P | Field mustard | cytosol | 74.46 | 91.95 |
| CDX99690 | Canola | cytosol | 74.46 | 91.95 |
| AT3G56800.1 | Thale cress | cytosol | 74.46 | 91.95 |
| Bra007269.1-P | Field mustard | cytosol | 73.91 | 91.28 |
| CDY12321 | Canola | cytosol | 71.74 | 91.03 |
| Bra034981.1-P | Field mustard | cytosol | 71.74 | 91.03 |
| VIT_06s0009g01910.t01 | Wine grape | cytosol | 75.54 | 90.85 |
| AT1G66410.2 | Thale cress | cytosol | 75.0 | 86.79 |
| AT2G41110.2 | Thale cress | cytosol | 74.46 | 85.09 |
| KRH18664 | Soybean | cytosol | 64.67 | 85.0 |
| TraesCS3B01G365900.1 | Wheat | cytosol | 84.24 | 84.7 |
| PGSC0003DMT400014123 | Potato | mitochondrion | 54.35 | 81.97 |
| AT2G27030.3 | Thale cress | cytosol | 78.8 | 80.11 |
| Bra034317.1-P | Field mustard | cytosol | 77.72 | 79.89 |
| CDY48191 | Canola | cytosol | 77.72 | 79.89 |
| CDX77060 | Canola | cytosol | 77.72 | 79.44 |
| CDX75970 | Canola | cytosol | 48.91 | 78.95 |
| AT5G37780.3 | Thale cress | cytosol | 75.0 | 78.86 |
| Zm00001d043144_P001 | Maize | plasma membrane | 73.91 | 74.32 |
| EES01631 | Sorghum | cytosol | 72.83 | 72.83 |
| KRG89812 | Soybean | cytosol, mitochondrion | 63.59 | 70.91 |
| PGSC0003DMT400097662 | Potato | cytosol, mitochondrion | 66.3 | 70.52 |
| HORVU3Hr1G038010.1 | Barley | cytosol, plastid | 75.0 | 69.35 |
| CDY30947 | Canola | cytosol | 78.26 | 68.9 |
| AT3G43810.2 | Thale cress | cytosol | 78.26 | 67.29 |
| HORVU5Hr1G044710.4 | Barley | cytosol | 64.67 | 66.11 |
| CDY57144 | Canola | cytosol | 52.17 | 65.75 |
| CDY21220 | Canola | cytosol | 77.72 | 64.71 |
| HORVU2Hr1G016740.4 | Barley | cytosol | 75.54 | 64.65 |
| HORVU5Hr1G014070.2 | Barley | cytosol | 53.8 | 59.64 |
| AT2G41090.1 | Thale cress | cytosol | 49.46 | 47.64 |
| HORVU0Hr1G001280.1 | Barley | cytosol | 37.5 | 45.7 |
| HORVU5Hr1G014060.1 | Barley | cytosol, plastid | 52.17 | 44.86 |
| HORVU4Hr1G026290.3 | Barley | cytosol, plastid | 50.54 | 42.08 |
| HORVU2Hr1G030640.1 | Barley | cytosol | 34.78 | 37.87 |
| HORVU7Hr1G113200.1 | Barley | cytosol | 36.41 | 37.02 |
| HORVU7Hr1G075240.1 | Barley | cytosol, plastid | 38.59 | 36.41 |
| HORVU1Hr1G080000.3 | Barley | cytosol | 30.43 | 29.95 |
| AT2G41100.1 | Thale cress | cytosol | 49.46 | 28.09 |
| HORVU3Hr1G052770.1 | Barley | cytosol | 36.41 | 27.13 |
| HORVU1Hr1G050720.2 | Barley | cytosol | 31.52 | 22.22 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G079210.4 | EnsemblPlantsGene:HORVU3Hr1G079210 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | ncoils:Coil | PANTHER:PTHR23050 |
| PANTHER:PTHR23050:SF230 | PFAM:PF13499 | PFscan:PS50222 | ScanProsite:PS00018 | SEG:seg | SMART:SM00054 |
| SUPFAM:SSF47473 | UniParc:UPI000B4758C9 | UniProt:A0A287LU93 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chrchr3H:-:582476840..582489627
Molecular Weight (calculated)
20510.0 Da
IEP (calculated)
4.222
GRAVY (calculated)
-0.715
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQLSEEQI GEFKEAFSLF DKDGDGSITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRQVM TNLGEKLSEE EVEEMVREAD VDGDGQINYD EFVKVMMAKR RDKRVEERRA PPARKSAAGA SPSGAKSGNK CIIL
101: ISAAELRQVM TNLGEKLSEE EVEEMVREAD VDGDGQINYD EFVKVMMAKR RDKRVEERRA PPARKSAAGA SPSGAKSGNK CIIL
001: MADQLTDEQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMAKKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVEEMIREAD VDGDGQINYE EFVKIMMAK
101: ISAAELRHVM TNLGEKLTDE EVEEMIREAD VDGDGQINYE EFVKIMMAK
Arabidopsis Description
CAM4Calmodulin 4 [Source:UniProtKB/TrEMBL;Acc:F4IEU4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.