Factsheet for HORVU6Hr1G058580.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G001280.1
HORVU2Hr1G016740.4
HORVU3Hr1G038010.1
HORVU3Hr1G079210.4
HORVU4Hr1G026290.3
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31180.1	HORVU0Hr1G001280.1	AT2G41090.1	17360592
AT2G31180.1	HORVU2Hr1G016740.4	AT2G41090.1	17360592
AT2G31180.1	HORVU3Hr1G038010.1	AT2G41090.1	17360592
AT2G31180.1	HORVU3Hr1G079210.4	AT2G41090.1	17360592
AT2G31180.1	HORVU4Hr1G026290.3	AT2G41090.1	17360592
AT2G31180.1	HORVU5Hr1G014060.1	AT2G41090.1	17360592
AT2G31180.1	HORVU5Hr1G014070.2	AT2G41090.1	17360592
AT2G31180.1	HORVU5Hr1G044710.4	AT2G41090.1	17360592
AT2G31180.1	HORVU0Hr1G001280.1	AT2G41100.1	17360592
AT2G31180.1	HORVU2Hr1G016740.4	AT2G41100.1	17360592
AT2G31180.1	HORVU3Hr1G038010.1	AT2G41100.1	17360592
AT2G31180.1	HORVU3Hr1G079210.4	AT2G41100.1	17360592
AT2G31180.1	HORVU4Hr1G026290.3	AT2G41100.1	17360592
AT2G31180.1	HORVU5Hr1G014060.1	AT2G41100.1	17360592
AT2G31180.1	HORVU5Hr1G014070.2	AT2G41100.1	17360592
AT2G31180.1	HORVU5Hr1G044710.4	AT2G41100.1	17360592
AT2G31180.1	HORVU0Hr1G001280.1	AT5G21274.1	17360592
AT2G31180.1	HORVU2Hr1G016740.4	AT5G21274.1	17360592
AT2G31180.1	HORVU3Hr1G038010.1	AT5G21274.1	17360592
AT2G31180.1	HORVU3Hr1G079210.4	AT5G21274.1	17360592
AT2G31180.1	HORVU4Hr1G026290.3	AT5G21274.1	17360592
AT2G31180.1	HORVU5Hr1G014060.1	AT5G21274.1	17360592
AT2G31180.1	HORVU5Hr1G014070.2	AT5G21274.1	17360592
AT2G31180.1	HORVU5Hr1G044710.4	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G257000.1	Wheat	nucleus	92.18	92.18
TraesCS6D01G210500.1	Wheat	nucleus	90.95	92.08
TraesCS6A01G224400.1	Wheat	nucleus	90.12	90.87
HORVU6Hr1G058640.1	Barley	nucleus	82.3	81.97
VIT_05s0049g01010.t01	Wine grape	nucleus	41.98	70.83
Os02t0624300-01	Rice	nucleus	72.84	68.6
HORVU6Hr1G058620.1	Barley	nucleus	81.48	68.28
HORVU6Hr1G058630.3	Barley	nucleus, plastid	79.42	66.32
Zm00001d017268_P001	Maize	nucleus	65.02	64.75
EES07173	Sorghum	nucleus	68.31	64.34
Zm00001d051149_P001	Maize	nucleus	67.49	63.08
PGSC0003DMT400034263	Potato	mitochondrion	19.34	55.29
KRG97042	Soybean	nucleus	45.68	52.36
KRH68789	Soybean	nucleus	43.21	50.24
PGSC0003DMT400060168	Potato	nucleus	44.03	48.64
Solyc05g055030.1.1	Tomato	nucleus	43.62	48.62
AT1G06180.1	Thale cress	nucleus	48.97	48.37
VIT_05s0049g01020.t01	Wine grape	nucleus	50.21	48.22
VIT_07s0005g03340.t01	Wine grape	nucleus	53.09	47.96
KRH34142	Soybean	nucleus	41.15	47.62
Bra021708.1-P	Field mustard	nucleus	48.97	47.6
KRH56057	Soybean	nucleus	31.28	47.5
AT2G31180.1	Thale cress	nucleus	48.15	46.99
Bra015481.1-P	Field mustard	nucleus	48.15	46.43
Bra022831.1-P	Field mustard	nucleus	46.91	46.34
Solyc09g090130.2.1	Tomato	nucleus	50.62	45.9
PGSC0003DMT400044362	Potato	nucleus	50.62	45.9
KRH69121	Soybean	nucleus	49.79	45.83
PGSC0003DMT400034878	Potato	nucleus	47.33	45.63
KRG92419	Soybean	nucleus	51.03	45.59
PGSC0003DMT400042007	Potato	nucleus	50.21	45.52
Solyc06g053610.2.1	Tomato	nucleus	49.38	45.28
KRH34387	Soybean	nucleus	51.03	45.09
KRH31704	Soybean	nucleus	48.97	45.08
Solyc06g083900.2.1	Tomato	nucleus	46.5	44.31
KRH32183	Soybean	nucleus	43.21	44.3
Bra018267.1-P	Field mustard	nucleus	46.09	44.27
KRG95664	Soybean	nucleus	52.67	43.99
KRH67378	Soybean	nucleus	53.09	43.88
Solyc03g005570.2.1	Tomato	nucleus	45.27	43.82
PGSC0003DMT400051682	Potato	nucleus	46.09	43.41
KRH22481	Soybean	nucleus	40.33	43.17
KRH25458	Soybean	nucleus	39.09	40.6
VIT_12s0134g00480.t01	Wine grape	nucleus	42.39	40.08
KRH56060	Soybean	nucleus	37.86	40.0
KRH56061	Soybean	nucleus	39.09	39.26
PGSC0003DMT400035748	Potato	nucleus	35.8	37.66
PGSC0003DMT400097096	Potato	nucleus	32.92	37.56
Solyc07g054960.1.1	Tomato	nucleus	32.92	37.04
Solyc12g005640.1.1	Tomato	nucleus	35.39	36.91
PGSC0003DMT400067318	Potato	nucleus	36.21	36.21
KRH25468	Soybean	nucleus	34.57	35.9
KRH56056	Soybean	nucleus	34.57	35.74
PGSC0003DMT400097604	Potato	nucleus	30.86	35.71
PGSC0003DMT400067321	Potato	nucleus	35.8	35.51
VIT_12s0134g00490.t01	Wine grape	nucleus	36.63	35.32
Solyc07g055000.1.1	Tomato	nucleus	34.57	34.71
PGSC0003DMT400067322	Potato	nucleus	34.98	34.69
Solyc07g053230.2.1	Tomato	nucleus	35.8	34.66
PGSC0003DMT400039029	Potato	nucleus	34.57	34.57
KRH26874	Soybean	nucleus	35.39	34.26
Solyc07g053240.2.1	Tomato	nucleus	34.57	33.73
PGSC0003DMT400093355	Potato	nucleus	32.92	33.2
Solyc06g033870.1.1	Tomato	nucleus	32.92	32.39
VIT_00s0203g00170.t01	Wine grape	nucleus	35.39	32.09
Solyc03g093930.2.1	Tomato	nucleus	32.1	31.84
Solyc06g034000.1.1	Tomato	nucleus	30.86	31.78
Solyc03g093940.1.1	Tomato	nucleus	27.98	31.34
PGSC0003DMT400051513	Potato	nucleus	31.69	31.17
KRH56058	Soybean	nucleus	39.92	30.5
KRH26875	Soybean	nucleus	38.68	30.03
Solyc03g093890.2.1	Tomato	nucleus	30.86	29.64
PGSC0003DMT400051510	Potato	nucleus	29.63	29.63
KRH25461	Soybean	nucleus	37.04	29.51
PGSC0003DMT400070912	Potato	nucleus	31.28	29.23
KRH56059	Soybean	nucleus	38.68	29.01
PGSC0003DMT400021498	Potato	nucleus	28.4	28.75
PGSC0003DMT400086165	Potato	nucleus	33.74	28.57
KRH25459	Soybean	nucleus	33.74	27.24
PGSC0003DMT400021503	Potato	nucleus	18.93	23.96
PGSC0003DMT400021501	Potato	nucleus	19.34	23.86
HORVU6Hr1G067380.1	Barley	nucleus	41.56	22.9
Solyc07g054980.1.1	Tomato	nucleus	36.21	18.8
CDX73801	Canola	nucleus	1.65	5.97

Protein Annotations

EMBL:AK371190	EnsemblPlants:HORVU6Hr1G058580.1	EnsemblPlantsGene:HORVU6Hr1G058580	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF695	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002007C71	UniProt:F2E4W6	MapMan:15.5.2.1	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E4W6]

Coordinates

chrchr6H:+:383454657..383455886

Molecular Weight (calculated)

26609.2 Da

IEP (calculated)

6.876

GRAVY (calculated)

-0.562

Length

243 amino acids

Sequence
(BLAST)

001: MGRSPCCEKM GLKRGPWTAE EDMTLVAHIE QHGHSNWRAL PNQAGLLRCG KSCRLRWINY LRPDIKRGNF TSEEEGAIIQ LHAMLGNRWS TIAARLPGRT
101: DNEIKNVWHT HLKKRLQSSS KPSGQAAPKR KAKKPAMAAA STADGSASVP VSPEQPISSS ATDYSMASSL ENTDSFTSEE FQIEDSFWSE TLAMTVDNSG
201: SPMDAGVTLG AQDSASPSSS NDEVDFWVRL FMQAGEVQSL SHI

Best Arabidopsis Sequence Match ( AT2G31180.1 )
(BLAST)

001: MGRAPCCEKM GVKRGPWTPE EDQILINYIH LYGHSNWRAL PKHAGLLRCG KSCRLRWINY LRPDIKRGNF TPQEEQTIIN LHESLGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLSKNL NNGGDTKDVN GINETTNEDK GSVIVDTASL QQFSNSITTF DISNDNKDDI MSYEDISALI DDSFWSDVIS VDNSNKNEKK
201: IEDWEGLIDR NSKKCSYSNS KLYNDDMEFW FDVFTSNRRI EEFSDIPEF

Arabidopsis Description

MYB14Transcription factor MYB14 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.