Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH56057 | Soybean | nucleus | 37.7 | 59.38 |
| VIT_05s0049g01010.t01 | Wine grape | nucleus | 32.94 | 57.64 |
| GSMUA_Achr4P18180_001 | Banana | nucleus | 32.54 | 56.16 |
| KRH56056 | Soybean | nucleus | 44.84 | 48.09 |
| KRH25468 | Soybean | nucleus | 44.05 | 47.44 |
| PGSC0003DMT400097096 | Potato | nucleus | 37.7 | 44.6 |
| Solyc07g054960.1.1 | Tomato | nucleus | 37.3 | 43.52 |
| VIT_12s0134g00480.t01 | Wine grape | nucleus | 44.05 | 43.19 |
| PGSC0003DMT400097604 | Potato | nucleus | 35.71 | 42.86 |
| GSMUA_Achr5P14600_001 | Banana | nucleus | 37.7 | 41.48 |
| GSMUA_Achr11P... | Banana | nucleus | 38.49 | 41.28 |
| GSMUA_Achr4P21910_001 | Banana | nucleus | 34.92 | 40.18 |
| GSMUA_Achr1P09180_001 | Banana | nucleus | 36.11 | 39.57 |
| VIT_05s0049g01020.t01 | Wine grape | nucleus | 38.49 | 38.34 |
| GSMUA_Achr5P03920_001 | Banana | nucleus | 36.11 | 37.92 |
| TraesCS6A01G224400.1 | Wheat | nucleus | 35.32 | 36.93 |
| TraesCS6D01G211200.1 | Wheat | nucleus | 35.71 | 36.89 |
| TraesCS6D01G210500.1 | Wheat | nucleus | 34.92 | 36.67 |
| HORVU6Hr1G058580.1 | Barley | nucleus | 35.32 | 36.63 |
| Zm00001d017268_P001 | Maize | nucleus | 35.32 | 36.48 |
| TraesCS6B01G257000.1 | Wheat | nucleus | 34.92 | 36.21 |
| TraesCS6D01G210800.1 | Wheat | nucleus | 31.35 | 36.07 |
| HORVU6Hr1G058640.1 | Barley | nucleus | 34.92 | 36.07 |
| TraesCS6D01G210900.1 | Wheat | nucleus | 34.52 | 35.95 |
| TraesCS6D01G211100.1 | Wheat | nucleus | 35.71 | 35.86 |
| EES07173 | Sorghum | nucleus | 36.51 | 35.66 |
| TraesCS6B01G257300.1 | Wheat | nucleus | 35.71 | 35.57 |
| TraesCS6D01G211400.1 | Wheat | nucleus | 35.71 | 35.43 |
| TraesCS6B01G257200.1 | Wheat | nucleus | 35.71 | 35.43 |
| TraesCS6A01G224000.1 | Wheat | nucleus | 35.71 | 35.16 |
| TraesCS6A01G224100.1 | Wheat | nucleus | 35.71 | 35.02 |
| TraesCS6B01G257100.1 | Wheat | nucleus | 34.92 | 34.92 |
| TraesCS6A01G224300.1 | Wheat | nucleus | 34.52 | 34.8 |
| TraesCS6A01G224200.1 | Wheat | nucleus | 34.92 | 34.78 |
| Zm00001d051149_P001 | Maize | nucleus | 35.71 | 34.62 |
| VIT_07s0005g03340.t01 | Wine grape | nucleus | 36.9 | 34.57 |
| PGSC0003DMT400086165 | Potato | nucleus | 39.29 | 34.49 |
| Os02t0624300-01 | Rice | nucleus | 34.52 | 33.72 |
| VIT_00s0203g00170.t01 | Wine grape | nucleus | 35.71 | 33.58 |
| EES12516 | Sorghum | nucleus | 36.11 | 33.46 |
| GSMUA_Achr6P31520_001 | Banana | nucleus | 32.14 | 33.2 |
| GSMUA_Achr4P28850_001 | Banana | nucleus | 35.71 | 33.09 |
| Zm00001d025864_P001 | Maize | nucleus | 36.11 | 32.85 |
| TraesCS6A01G265300.1 | Wheat | nucleus | 34.13 | 32.82 |
| Zm00001d014029_P001 | Maize | nucleus | 35.71 | 32.37 |
| Zm00001d032694_P001 | Maize | nucleus | 34.92 | 32.35 |
| HORVU6Hr1G058630.3 | Barley | nucleus, plastid | 36.11 | 31.27 |
| Os10t0478300-01 | Rice | nucleus | 34.13 | 31.16 |
| Zm00001d003064_P001 | Maize | nucleus | 36.11 | 30.95 |
| TraesCS1A01G155300.1 | Wheat | nucleus | 32.14 | 30.8 |
| GSMUA_Achr11P... | Banana | nucleus | 34.92 | 30.66 |
| EER91482 | Sorghum | nucleus | 35.32 | 30.07 |
| TraesCS1D01G154000.1 | Wheat | nucleus | 31.35 | 30.04 |
| HORVU6Hr1G058620.1 | Barley | nucleus | 34.52 | 30.0 |
| TraesCS1B01G172500.1 | Wheat | nucleus | 30.56 | 29.62 |
| GSMUA_Achr5P03520_001 | Banana | nucleus | 35.32 | 29.37 |
| GSMUA_Achr2P18090_001 | Banana | nucleus | 34.52 | 28.71 |
| GSMUA_Achr4P27350_001 | Banana | nucleus | 34.13 | 28.67 |
| TraesCS2D01G444200.1 | Wheat | nucleus | 35.71 | 28.39 |
| GSMUA_Achr11P... | Banana | nucleus | 34.13 | 28.38 |
| Zm00001d026204_P001 | Maize | nucleus | 36.51 | 27.96 |
| GSMUA_Achr5P18600_001 | Banana | nucleus | 36.9 | 27.93 |
| TraesCS2D01G378400.2 | Wheat | nucleus | 34.92 | 27.85 |
| TraesCS2B01G399200.1 | Wheat | nucleus | 34.92 | 27.85 |
| TraesCS2A01G381900.2 | Wheat | nucleus | 34.92 | 26.91 |
| TraesCS6B01G292500.1 | Wheat | nucleus | 34.52 | 26.28 |
| TraesCS6D01G249200.1 | Wheat | nucleus | 34.92 | 26.19 |
| Os02t0695200-01 | Rice | nucleus | 34.92 | 25.88 |
| TraesCS2B01G466400.1 | Wheat | nucleus | 35.71 | 25.35 |
| Zm00001d051520_P001 | Maize | nucleus | 34.13 | 25.29 |
| EES12768 | Sorghum | nucleus | 37.3 | 25.0 |
| Os04t0594100-01 | Rice | nucleus | 35.71 | 24.26 |
| TraesCS2D01G444300.1 | Wheat | nucleus | 34.92 | 24.24 |
| VIT_19s0085g00050.t01 | Wine grape | nucleus | 34.92 | 24.18 |
| TraesCS2B01G466500.1 | Wheat | nucleus | 34.52 | 24.1 |
| Zm00001d026203_P001 | Maize | nucleus | 36.51 | 24.08 |
| TraesCS2A01G445500.1 | Wheat | nucleus | 34.52 | 23.71 |
| Zm00001d002476_P001 | Maize | nucleus | 37.7 | 23.46 |
| EES05685 | Sorghum | nucleus | 35.32 | 22.94 |
| Os04t0517100-01 | Rice | nucleus | 15.48 | 21.91 |
| HORVU6Hr1G067380.1 | Barley | nucleus | 34.52 | 19.73 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100246003 | wikigene:100246003 | MapMan:15.5.2.1 | ProteinID:CBI18002 | ProteinID:CBI18002.3 |
| UniProt:D7SQS1 | EMBL:FN594966 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| EntrezGene:LOC100246003 | wikigene:LOC100246003 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF932 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00015CAE72 | ArrayExpress:VIT_12s0134g00490 |
| EnsemblPlantsGene:VIT_12s0134g00490 | EnsemblPlants:VIT_12s0134g00490.t01 | RefSeq:XP_002276962 | RefSeq:XP_002276962.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr12:+:8125143..8126503
Molecular Weight (calculated)
29550.9 Da
IEP (calculated)
5.993
GRAVY (calculated)
-1.108
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRNPCYDKY GRKKGAWSPE EDEKLRAYVQ RYGHWNWREL PRFAGLSRCG KSCRLRWLNY LRPNVKRGNY SKAEEETIKK LHEELGNKWS AIAKKLPGRT
101: DNEIKNYWHT HLKKRERQNP AKSQVVRQPP GTSKREGDDQ KRELESENIH ADAPSHYILE SFSTSPESES SSSEISTLSF DYTPAVNEMN WFADEGIASS
201: ETFAEPNENF WTEPFLTDDS YTQYYYPPIN ASLYDSYCDN DTDLFQDIWS IS
101: DNEIKNYWHT HLKKRERQNP AKSQVVRQPP GTSKREGDDQ KRELESENIH ADAPSHYILE SFSTSPESES SSSEISTLSF DYTPAVNEMN WFADEGIASS
201: ETFAEPNENF WTEPFLTDDS YTQYYYPPIN ASLYDSYCDN DTDLFQDIWS IS
001: MGRRPCCEKI GLKKGPWSAE EDRILINYIS LHGHPNWRAL PKLAGLLRCG KSCRLRWINY LRPDIKRGNF TPHEEDTIIS LHQLLGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLHHSQ DQNNKEDFVS TTAAEMPTSP QQQSSSSADI SAITTLGNNN DISNSNKDSA TSSEDVLAII DESFWSEVVL MDCDISGNEK
201: NEKKIENWEG SLDRNDKGYN HDMEFWFDHL TSSSCIIGEM SDISEF
101: DNEIKNVWHT HLKKRLHHSQ DQNNKEDFVS TTAAEMPTSP QQQSSSSADI SAITTLGNNN DISNSNKDSA TSSEDVLAII DESFWSEVVL MDCDISGNEK
201: NEKKIENWEG SLDRNDKGYN HDMEFWFDHL TSSSCIIGEM SDISEF
Arabidopsis Description
ATMYB13Transcription factor MYB13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.