CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01631
EES09201
EES16322
KXG37587
KXG37588
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31180.1	EES01631	AT2G41090.1	17360592
AT2G31180.1	EES09201	AT2G41090.1	17360592
AT2G31180.1	EES16322	AT2G41090.1	17360592
AT2G31180.1	OQU78227	AT2G41090.1	17360592
AT2G31180.1	EES01631	AT2G41100.1	17360592
AT2G31180.1	EES09201	AT2G41100.1	17360592
AT2G31180.1	EES16322	AT2G41100.1	17360592
AT2G31180.1	OQU78227	AT2G41100.1	17360592
AT2G31180.1	KXG37587	AT4G14640.1	17360592
AT2G31180.1	KXG37588	AT4G14640.1	17360592
AT2G31180.1	EES01631	AT5G21274.1	17360592
AT2G31180.1	EES09201	AT5G21274.1	17360592
AT2G31180.1	EES16322	AT5G21274.1	17360592
AT2G31180.1	OQU78227	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026204_P001	Maize	nucleus	71.81	82.07
Zm00001d026203_P001	Maize	nucleus	81.12	79.84
Zm00001d002476_P001	Maize	nucleus	84.84	78.77
TraesCS2D01G444200.1	Wheat	nucleus	56.65	67.19
TraesCS2D01G444300.1	Wheat	nucleus	62.77	65.01
Os04t0594100-01	Rice	nucleus	64.1	64.96
TraesCS2B01G466500.1	Wheat	nucleus	61.7	64.27
TraesCS2A01G445500.1	Wheat	nucleus	62.5	64.03
VIT_05s0049g01010.t01	Wine grape	nucleus	24.2	63.19
TraesCS2B01G466400.1	Wheat	nucleus	58.24	61.69
PGSC0003DMT400034263	Potato	mitochondrion	12.23	54.12
GSMUA_Achr2P18090_001	Banana	nucleus	42.82	53.14
EES05685	Sorghum	nucleus	53.72	52.06
GSMUA_Achr11P...	Banana	nucleus	39.36	51.57
GSMUA_Achr5P03520_001	Banana	nucleus	41.49	51.49
GSMUA_Achr4P28850_001	Banana	nucleus	36.44	50.37
EES07173	Sorghum	nucleus	33.24	48.45
KRH56057	Soybean	nucleus	20.48	48.12
GSMUA_Achr4P27350_001	Banana	nucleus	38.03	47.67
GSMUA_Achr6P31520_001	Banana	nucleus	30.85	47.54
KRH34142	Soybean	nucleus	25.8	46.19
VIT_05s0049g01020.t01	Wine grape	nucleus	30.59	45.45
Solyc05g055030.1.1	Tomato	nucleus	26.06	44.95
Bra021708.1-P	Field mustard	nucleus	29.79	44.8
KRH68789	Soybean	nucleus	24.73	44.5
AT2G31180.1	Thale cress	nucleus	29.26	44.18
PGSC0003DMT400060168	Potato	nucleus	25.8	44.09
AT1G06180.1	Thale cress	nucleus	28.72	43.9
Solyc06g083900.2.1	Tomato	nucleus	29.52	43.53
KRG97042	Soybean	nucleus	24.47	43.4
Bra015481.1-P	Field mustard	nucleus	28.99	43.25
PGSC0003DMT400034878	Potato	nucleus	28.72	42.86
VIT_07s0005g03340.t01	Wine grape	nucleus	30.59	42.75
Bra022831.1-P	Field mustard	nucleus	27.93	42.68
PGSC0003DMT400051682	Potato	nucleus	29.26	42.64
KRH31704	Soybean	nucleus	29.79	42.42
KRH69121	Soybean	nucleus	29.79	42.42
Solyc06g053610.2.1	Tomato	nucleus	29.79	42.26
Solyc03g005570.2.1	Tomato	nucleus	27.93	41.83
PGSC0003DMT400042007	Potato	nucleus	29.79	41.79
Bra018267.1-P	Field mustard	nucleus	27.93	41.5
KRH22481	Soybean	nucleus	25.0	41.41
KRH32183	Soybean	nucleus	26.06	41.35
KRG92419	Soybean	nucleus	29.79	41.18
KRH34387	Soybean	nucleus	30.05	41.09
PGSC0003DMT400044362	Potato	nucleus	29.26	41.04
EER91482	Sorghum	nucleus	32.18	40.88
EES12516	Sorghum	nucleus	29.52	40.81
Solyc09g090130.2.1	Tomato	nucleus	28.99	40.67
KRG95664	Soybean	nucleus	31.38	40.55
KRH56060	Soybean	nucleus	24.73	40.43
KRH67378	Soybean	nucleus	31.38	40.14
KRH25458	Soybean	nucleus	24.47	39.32
KRH56061	Soybean	nucleus	24.73	38.43
VIT_12s0134g00480.t01	Wine grape	nucleus	26.06	38.13
Solyc07g054960.1.1	Tomato	nucleus	21.81	37.96
KRH56056	Soybean	nucleus	23.4	37.45
VIT_12s0134g00490.t01	Wine grape	nucleus	25.0	37.3
Solyc12g005640.1.1	Tomato	nucleus	22.87	36.91
KRH25468	Soybean	nucleus	22.87	36.75
PGSC0003DMT400067321	Potato	nucleus	23.94	36.73
PGSC0003DMT400067322	Potato	nucleus	23.94	36.73
PGSC0003DMT400067318	Potato	nucleus	23.67	36.63
PGSC0003DMT400035748	Potato	nucleus	22.34	36.36
Solyc07g053230.2.1	Tomato	nucleus	24.2	36.26
PGSC0003DMT400097096	Potato	nucleus	20.48	36.15
Solyc07g053240.2.1	Tomato	nucleus	23.94	36.14
Solyc07g055000.1.1	Tomato	nucleus	22.87	35.54
PGSC0003DMT400097604	Potato	nucleus	19.68	35.24
VIT_00s0203g00170.t01	Wine grape	nucleus	25.0	35.07
KRH26874	Soybean	nucleus	23.4	35.06
Solyc06g033870.1.1	Tomato	nucleus	22.87	34.82
PGSC0003DMT400093355	Potato	nucleus	22.07	34.44
Solyc06g034000.1.1	Tomato	nucleus	21.28	33.9
PGSC0003DMT400039029	Potato	nucleus	21.81	33.74
Solyc03g093940.1.1	Tomato	nucleus	19.41	33.64
KRH25461	Soybean	nucleus	26.86	33.11
PGSC0003DMT400051513	Potato	nucleus	21.54	32.79
Solyc03g093930.2.1	Tomato	nucleus	21.28	32.65
PGSC0003DMT400051510	Potato	nucleus	21.01	32.51
KRH56059	Soybean	nucleus	27.93	32.41
KRH26875	Soybean	nucleus	26.86	32.27
PGSC0003DMT400070912	Potato	nucleus	22.07	31.92
KRH56058	Soybean	nucleus	26.86	31.76
Solyc03g093890.2.1	Tomato	nucleus	21.28	31.62
KRH25459	Soybean	nucleus	24.73	30.9
PGSC0003DMT400021498	Potato	nucleus	19.41	30.42
PGSC0003DMT400086165	Potato	nucleus	21.54	28.22
PGSC0003DMT400021503	Potato	nucleus	12.5	24.48
PGSC0003DMT400021501	Potato	nucleus	12.77	24.37
Solyc07g054980.1.1	Tomato	nucleus	26.6	21.37
CDX73801	Canola	nucleus	1.6	8.96

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8071095	UniProt:C5YF25	EnsemblPlants:EES12768	ProteinID:EES12768
ProteinID:EES12768.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF596	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3006G199800	SUPFAM:SSF46689	UniParc:UPI0001A8740A	RefSeq:XP_002448440.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:55156816..55158923

Molecular Weight (calculated)

40576.4 Da

IEP (calculated)

4.534

GRAVY (calculated)

-0.601

Length

376 amino acids

Sequence
(BLAST)

001: MGKGRAPCCA KVGLNKGSWT PEEDMRLIAY IQKYGHANWR ALPKQAGLLR CGKSCRLRWI NYLRPDLKRG NFTADEEETI IKLHAMLGNK WSKIASCLPG
101: RTDNEIKNVW NTHLKKRVSP AGGGEERGAK KKKKKKEAAA GGGAEEPLPS PSPSPSSSTT TTTTTNCSSG DDSGEQQSNT SKEEPDDDEL DLENLEMMRM
201: LDDPITFGFD MLVDPVPPPA PYGPAVSSPT SPCASSGVDD HLLVLPEIDI DHELWSIIDG DACTVADAEA PAPCCQLSNA SQPPNGGANT SSHGAEEGKE
301: WWLEDLEREL GLWGPVEEYQ YQYPMGPHGL VADQPDPLPA MVDDPVSCYF EAGPASAMLQ EPAYSAAVTS SNHVGL

Best Arabidopsis Sequence Match ( AT1G79180.1 )
(BLAST)

001: MGKGRAPCCD KTKVKRGPWS PEEDIKLISF IQKFGHENWR SLPKQSGLLR CGKSCRLRWI NYLRPDLKRG NFTSEEEETI IKLHHNYGNK WSKIASQLPG
101: RTDNEIKNVW HTHLKKRLAQ SSGTADEPAS PCSSDSVSRG KDDKSSHVED SLNRETNHRN ELSTSMSSGG SNQQDDPKID ELRFEYIEEA YSEFNDIIIQ
201: EVDKPDLLEI PFDSDPDIWS FLDTSNSFQQ STANENSSGS RATTEEESDE DEVKKWFKHL ESELGLEEDD NQQQYKEEES SSSSLLKNYE LMIH

Arabidopsis Description

ATMYB63myb domain protein 63 [Source:TAIR;Acc:AT1G79180]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.