Factsheet for Zm00001d026203_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005003_P002
Zm00001d008278_P001
Zm00001d010649_P001
Zm00001d028948_P001
Zm00001d033980_P001
Zm00001d038543_P004
Zm00001d038545_P001
Zm00001d041430_P001
Zm00001d043144_P001
Zm00001d047597_P001
Zm00001d052415_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31180.1	Zm00001d005003_P002	AT2G41090.1	17360592
AT2G31180.1	Zm00001d008278_P001	AT2G41090.1	17360592
AT2G31180.1	Zm00001d010649_P001	AT2G41090.1	17360592
AT2G31180.1	Zm00001d028948_P001	AT2G41090.1	17360592
AT2G31180.1	Zm00001d038543_P004	AT2G41090.1	17360592
AT2G31180.1	Zm00001d038545_P001	AT2G41090.1	17360592
AT2G31180.1	Zm00001d041430_P001	AT2G41090.1	17360592
AT2G31180.1	Zm00001d043144_P001	AT2G41090.1	17360592
AT2G31180.1	Zm00001d047597_P001	AT2G41090.1	17360592
AT2G31180.1	Zm00001d052415_P001	AT2G41090.1	17360592
AT2G31180.1	Zm00001d005003_P002	AT2G41100.1	17360592
AT2G31180.1	Zm00001d008278_P001	AT2G41100.1	17360592
AT2G31180.1	Zm00001d010649_P001	AT2G41100.1	17360592
AT2G31180.1	Zm00001d028948_P001	AT2G41100.1	17360592
AT2G31180.1	Zm00001d038543_P004	AT2G41100.1	17360592
AT2G31180.1	Zm00001d038545_P001	AT2G41100.1	17360592
AT2G31180.1	Zm00001d041430_P001	AT2G41100.1	17360592
AT2G31180.1	Zm00001d043144_P001	AT2G41100.1	17360592
AT2G31180.1	Zm00001d047597_P001	AT2G41100.1	17360592
AT2G31180.1	Zm00001d052415_P001	AT2G41100.1	17360592
AT2G31180.1	Zm00001d033980_P001	AT4G14640.1	17360592
AT2G31180.1	Zm00001d005003_P002	AT5G21274.1	17360592
AT2G31180.1	Zm00001d008278_P001	AT5G21274.1	17360592
AT2G31180.1	Zm00001d010649_P001	AT5G21274.1	17360592
AT2G31180.1	Zm00001d028948_P001	AT5G21274.1	17360592
AT2G31180.1	Zm00001d038543_P004	AT5G21274.1	17360592
AT2G31180.1	Zm00001d038545_P001	AT5G21274.1	17360592
AT2G31180.1	Zm00001d041430_P001	AT5G21274.1	17360592
AT2G31180.1	Zm00001d043144_P001	AT5G21274.1	17360592
AT2G31180.1	Zm00001d047597_P001	AT5G21274.1	17360592
AT2G31180.1	Zm00001d052415_P001	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026204_P001	Maize	nucleus	84.82	98.48
EES12768	Sorghum	nucleus	79.84	81.12
Zm00001d002476_P001	Maize	nucleus	82.46	77.78
Os04t0594100-01	Rice	nucleus	62.57	64.42
TraesCS2D01G444200.1	Wheat	nucleus	53.14	64.04
VIT_05s0049g01010.t01	Wine grape	nucleus	23.82	63.19
TraesCS2B01G466500.1	Wheat	nucleus	58.64	62.05
TraesCS2D01G444300.1	Wheat	nucleus	58.64	61.71
TraesCS2A01G445500.1	Wheat	nucleus	58.12	60.49
TraesCS2B01G466400.1	Wheat	nucleus	54.97	59.15
Zm00001d051520_P001	Maize	nucleus	49.21	55.29
PGSC0003DMT400034263	Potato	mitochondrion	12.04	54.12
GSMUA_Achr2P18090_001	Banana	nucleus	42.15	53.14
GSMUA_Achr11P...	Banana	nucleus	38.48	51.22
GSMUA_Achr5P03520_001	Banana	nucleus	40.31	50.83
KRH56057	Soybean	nucleus	20.68	49.38
GSMUA_Achr4P28850_001	Banana	nucleus	34.29	48.16
Zm00001d017268_P001	Maize	nucleus	30.63	47.95
GSMUA_Achr4P27350_001	Banana	nucleus	37.17	47.33
KRH34142	Soybean	nucleus	25.92	47.14
GSMUA_Achr6P31520_001	Banana	nucleus	29.32	45.9
Solyc05g055030.1.1	Tomato	nucleus	25.92	45.41
PGSC0003DMT400060168	Potato	nucleus	25.65	44.55
KRH68789	Soybean	nucleus	24.35	44.5
Zm00001d051149_P001	Maize	nucleus	30.1	44.23
VIT_05s0049g01020.t01	Wine grape	nucleus	29.06	43.87
KRG97042	Soybean	nucleus	24.35	43.87
AT1G06180.1	Thale cress	nucleus	27.75	43.09
Bra021708.1-P	Field mustard	nucleus	27.75	42.4
VIT_07s0005g03340.t01	Wine grape	nucleus	29.84	42.38
Solyc06g083900.2.1	Tomato	nucleus	28.01	41.96
AT2G31180.1	Thale cress	nucleus	27.23	41.77
PGSC0003DMT400051682	Potato	nucleus	28.01	41.47
KRH31704	Soybean	nucleus	28.53	41.29
KRH69121	Soybean	nucleus	28.53	41.29
Bra022831.1-P	Field mustard	nucleus	26.44	41.06
KRH32183	Soybean	nucleus	25.39	40.93
Bra015481.1-P	Field mustard	nucleus	26.96	40.87
PGSC0003DMT400034878	Potato	nucleus	26.96	40.87
Bra018267.1-P	Field mustard	nucleus	26.96	40.71
Zm00001d025864_P001	Maize	nucleus	29.32	40.43
PGSC0003DMT400044362	Potato	nucleus	28.27	40.3
KRH22481	Soybean	nucleus	23.82	40.09
Solyc06g053610.2.1	Tomato	nucleus	27.75	40.0
Solyc09g090130.2.1	Tomato	nucleus	28.01	39.93
Solyc03g005570.2.1	Tomato	nucleus	26.18	39.84
KRG92419	Soybean	nucleus	28.27	39.71
Zm00001d014029_P001	Maize	nucleus	28.8	39.57
PGSC0003DMT400042007	Potato	nucleus	27.75	39.55
KRG95664	Soybean	nucleus	30.1	39.52
Zm00001d032694_P001	Maize	nucleus	28.01	39.34
KRH34387	Soybean	nucleus	28.27	39.27
KRH56060	Soybean	nucleus	23.56	39.13
KRH67378	Soybean	nucleus	29.84	38.78
KRH56056	Soybean	nucleus	23.56	38.3
VIT_12s0134g00480.t01	Wine grape	nucleus	25.65	38.13
Zm00001d003064_P001	Maize	nucleus	29.32	38.1
KRH25458	Soybean	nucleus	23.3	38.03
Solyc07g054960.1.1	Tomato	nucleus	21.47	37.96
KRH25468	Soybean	nucleus	23.04	37.61
KRH56061	Soybean	nucleus	23.56	37.19
PGSC0003DMT400067321	Potato	nucleus	23.82	37.14
PGSC0003DMT400067318	Potato	nucleus	23.56	37.04
Solyc07g053240.2.1	Tomato	nucleus	24.08	36.95
Solyc07g053230.2.1	Tomato	nucleus	24.08	36.65
VIT_12s0134g00490.t01	Wine grape	nucleus	24.08	36.51
Solyc12g005640.1.1	Tomato	nucleus	22.25	36.48
PGSC0003DMT400035748	Potato	nucleus	21.99	36.36
PGSC0003DMT400067322	Potato	nucleus	23.3	36.33
PGSC0003DMT400097096	Potato	nucleus	20.16	36.15
PGSC0003DMT400097604	Potato	nucleus	19.63	35.71
Solyc07g055000.1.1	Tomato	nucleus	22.51	35.54
VIT_00s0203g00170.t01	Wine grape	nucleus	24.35	34.7
Solyc06g033870.1.1	Tomato	nucleus	22.25	34.41
Solyc06g034000.1.1	Tomato	nucleus	21.2	34.32
KRH26874	Soybean	nucleus	22.51	34.26
PGSC0003DMT400039029	Potato	nucleus	21.73	34.16
PGSC0003DMT400051513	Potato	nucleus	21.73	33.6
PGSC0003DMT400051510	Potato	nucleus	21.2	33.33
Solyc03g093940.1.1	Tomato	nucleus	18.85	33.18
KRH25461	Soybean	nucleus	26.18	32.79
PGSC0003DMT400093355	Potato	nucleus	20.68	32.78
KRH26875	Soybean	nucleus	26.7	32.59
Solyc03g093890.2.1	Tomato	nucleus	21.47	32.41
PGSC0003DMT400070912	Potato	nucleus	21.99	32.31
KRH56059	Soybean	nucleus	27.23	32.1
Solyc03g093930.2.1	Tomato	nucleus	20.42	31.84
KRH56058	Soybean	nucleus	26.18	31.45
PGSC0003DMT400021498	Potato	nucleus	19.63	31.25
KRH25459	Soybean	nucleus	23.82	30.23
PGSC0003DMT400086165	Potato	nucleus	20.68	27.53
PGSC0003DMT400021503	Potato	nucleus	12.04	23.96
PGSC0003DMT400021501	Potato	nucleus	12.3	23.86
Solyc07g054980.1.1	Tomato	nucleus	26.7	21.79
CDX73801	Canola	nucleus	1.83	10.45

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100037740	MapMan:15.5.2.1	ProteinID:AQK45838.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K7TN71	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF596	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0001E24798	EnsemblPlantsGene:Zm00001d026203	EnsemblPlants:Zm00001d026203_P001	EnsemblPlants:Zm00001d026203_T001	SEG:seg

Description

MYB-transcription factor 5Putative MYB DNA-binding domain superfamily protein

Coordinates

chr10:-:140869750..140871173

Molecular Weight (calculated)

40652.8 Da

IEP (calculated)

4.863

GRAVY (calculated)

-0.486

Length

382 amino acids

Sequence
(BLAST)

001: MGKGRAPCCA KVGLNKGSWT PEEDMRLIAY IQKYGHANWR ALPKQAGLLR CGKSCRLRWI NYLRPDLKRG NFTAEEEEAI IKLHGLLGNK WSKIASCLPG
101: RTDNEIKNVW NTHLKKRVSP AGEERGAAGS KKKKKKKTTK AAAGGGAEAP LPLPSPSPSS STTTTNFSSG DSGEQQSNNM SKEADDELDL ENFEMMPMLD
201: VDDPSFGFGT LVDTAPAPYG SAVSVSASAA TSPCASSTSP PPASAPPGVD DLLVLPEIDM GHELWSIIDG DAAEAPAPRC QRNPAEPTNG ADAGSHGAEG
301: KEWWLEDLER ELGLWGTVED YQYPMGPQGL LVADHPDPLP AMVDDPVSCY FQAGPASAVL QELPGYPVPA TAVTGSINQM GL

Best Arabidopsis Sequence Match ( AT1G79180.1 )
(BLAST)

001: MGKGRAPCCD KTKVKRGPWS PEEDIKLISF IQKFGHENWR SLPKQSGLLR CGKSCRLRWI NYLRPDLKRG NFTSEEEETI IKLHHNYGNK WSKIASQLPG
101: RTDNEIKNVW HTHLKKRLAQ SSGTADEPAS PCSSDSVSRG KDDKSSHVED SLNRETNHRN ELSTSMSSGG SNQQDDPKID ELRFEYIEEA YSEFNDIIIQ
201: EVDKPDLLEI PFDSDPDIWS FLDTSNSFQQ STANENSSGS RATTEEESDE DEVKKWFKHL ESELGLEEDD NQQQYKEEES SSSSLLKNYE LMIH

Arabidopsis Description

ATMYB63myb domain protein 63 [Source:TAIR;Acc:AT1G79180]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.