Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400097604 | Potato | nucleus | 60.28 | 82.38 |
| PGSC0003DMT400097096 | Potato | nucleus | 51.57 | 69.48 |
| KRH56057 | Soybean | nucleus | 29.62 | 53.12 |
| PGSC0003DMT400034263 | Potato | mitochondrion | 15.33 | 51.76 |
| GSMUA_Achr4P18180_001 | Banana | nucleus | 25.09 | 49.32 |
| KRH56056 | Soybean | nucleus | 33.45 | 40.85 |
| KRH25468 | Soybean | nucleus | 33.1 | 40.6 |
| VIT_12s0134g00490.t01 | Wine grape | nucleus | 34.49 | 39.29 |
| PGSC0003DMT400060168 | Potato | nucleus | 29.27 | 38.18 |
| PGSC0003DMT400035748 | Potato | nucleus | 29.97 | 37.23 |
| GSMUA_Achr5P14600_001 | Banana | nucleus | 28.92 | 36.24 |
| TraesCS6D01G210800.1 | Wheat | nucleus | 27.53 | 36.07 |
| TraesCS6A01G224400.1 | Wheat | nucleus | 29.62 | 35.27 |
| GSMUA_Achr1P09180_001 | Banana | nucleus | 28.22 | 35.22 |
| PGSC0003DMT400067321 | Potato | nucleus | 29.97 | 35.1 |
| TraesCS6B01G257200.1 | Wheat | nucleus | 31.01 | 35.04 |
| GSMUA_Achr5P03920_001 | Banana | nucleus | 29.27 | 35.0 |
| PGSC0003DMT400039029 | Potato | nucleus | 29.62 | 34.98 |
| HORVU6Hr1G058640.1 | Barley | nucleus | 29.62 | 34.84 |
| PGSC0003DMT400067322 | Potato | nucleus | 29.62 | 34.69 |
| TraesCS6D01G210500.1 | Wheat | nucleus | 28.92 | 34.58 |
| TraesCS6B01G257000.1 | Wheat | nucleus | 29.27 | 34.57 |
| TraesCS6B01G257100.1 | Wheat | nucleus | 30.31 | 34.52 |
| GSMUA_Achr11P... | Banana | nucleus | 27.87 | 34.04 |
| TraesCS6D01G211200.1 | Wheat | nucleus | 28.92 | 34.02 |
| HORVU6Hr1G058580.1 | Barley | nucleus | 28.57 | 33.74 |
| Zm00001d017268_P001 | Maize | nucleus | 28.57 | 33.61 |
| TraesCS6B01G257300.1 | Wheat | nucleus | 29.62 | 33.6 |
| TraesCS6D01G210900.1 | Wheat | nucleus | 28.22 | 33.47 |
| TraesCS6D01G211100.1 | Wheat | nucleus | 29.27 | 33.47 |
| TraesCS6D01G211400.1 | Wheat | nucleus | 29.62 | 33.46 |
| GSMUA_Achr4P21910_001 | Banana | nucleus | 25.44 | 33.33 |
| PGSC0003DMT400067318 | Potato | nucleus | 28.22 | 33.33 |
| TraesCS6A01G224200.1 | Wheat | nucleus | 29.27 | 33.2 |
| Zm00001d051149_P001 | Maize | nucleus | 29.97 | 33.08 |
| TraesCS6A01G224000.1 | Wheat | nucleus | 29.27 | 32.81 |
| TraesCS6A01G224100.1 | Wheat | nucleus | 29.27 | 32.68 |
| EES07173 | Sorghum | nucleus | 29.27 | 32.56 |
| TraesCS6A01G224300.1 | Wheat | nucleus | 28.22 | 32.4 |
| PGSC0003DMT400029235 | Potato | nucleus | 26.83 | 32.22 |
| Os02t0624300-01 | Rice | nucleus | 28.92 | 32.17 |
| PGSC0003DMT400051682 | Potato | nucleus | 28.57 | 31.78 |
| PGSC0003DMT400089342 | Potato | nucleus | 26.48 | 31.54 |
| PGSC0003DMT400042007 | Potato | nucleus | 29.27 | 31.34 |
| Zm00001d025864_P001 | Maize | nucleus | 29.97 | 31.05 |
| PGSC0003DMT400034878 | Potato | nucleus | 27.18 | 30.95 |
| TraesCS1A01G155300.1 | Wheat | nucleus | 28.22 | 30.8 |
| TraesCS1B01G172500.1 | Wheat | nucleus | 27.87 | 30.77 |
| PGSC0003DMT400021498 | Potato | nucleus | 25.44 | 30.42 |
| GSMUA_Achr6P31520_001 | Banana | nucleus | 25.78 | 30.33 |
| EES12516 | Sorghum | nucleus | 28.22 | 29.78 |
| Os10t0478300-01 | Rice | nucleus | 28.57 | 29.71 |
| PGSC0003DMT400093355 | Potato | nucleus | 24.74 | 29.46 |
| PGSC0003DMT400044362 | Potato | nucleus | 27.18 | 29.1 |
| GSMUA_Achr4P28850_001 | Banana | nucleus | 27.53 | 29.04 |
| TraesCS6A01G265300.1 | Wheat | nucleus | 26.48 | 29.01 |
| TraesCS1D01G154000.1 | Wheat | nucleus | 26.48 | 28.9 |
| HORVU6Hr1G058630.3 | Barley | nucleus, plastid | 29.27 | 28.87 |
| PGSC0003DMT400051513 | Potato | nucleus | 24.74 | 28.74 |
| Zm00001d032694_P001 | Maize | nucleus | 27.18 | 28.68 |
| HORVU6Hr1G058620.1 | Barley | nucleus | 28.92 | 28.62 |
| Zm00001d003064_P001 | Maize | nucleus | 28.57 | 27.89 |
| PGSC0003DMT400070912 | Potato | nucleus | 25.09 | 27.69 |
| PGSC0003DMT400051510 | Potato | nucleus | 23.34 | 27.57 |
| Zm00001d014029_P001 | Maize | nucleus | 26.48 | 27.34 |
| GSMUA_Achr11P... | Banana | nucleus | 27.18 | 27.18 |
| TraesCS2D01G378400.2 | Wheat | nucleus | 29.62 | 26.9 |
| EER91482 | Sorghum | nucleus | 27.53 | 26.69 |
| TraesCS2B01G399200.1 | Wheat | nucleus | 29.27 | 26.58 |
| GSMUA_Achr11P... | Banana | nucleus | 27.87 | 26.4 |
| TraesCS2A01G381900.2 | Wheat | nucleus | 29.27 | 25.69 |
| GSMUA_Achr2P18090_001 | Banana | nucleus | 26.83 | 25.41 |
| TraesCS2D01G444200.1 | Wheat | nucleus | 27.87 | 25.24 |
| PGSC0003DMT400021503 | Potato | nucleus | 16.72 | 25.0 |
| PGSC0003DMT400021501 | Potato | nucleus | 17.07 | 24.87 |
| GSMUA_Achr4P27350_001 | Banana | nucleus | 25.78 | 24.67 |
| Zm00001d026204_P001 | Maize | nucleus | 27.87 | 24.32 |
| TraesCS6B01G292500.1 | Wheat | nucleus | 27.87 | 24.17 |
| TraesCS6D01G249200.1 | Wheat | nucleus | 28.22 | 24.11 |
| GSMUA_Achr5P03520_001 | Banana | nucleus | 25.44 | 24.09 |
| GSMUA_Achr5P18600_001 | Banana | nucleus | 27.87 | 24.02 |
| Os02t0695200-01 | Rice | nucleus | 28.22 | 23.82 |
| TraesCS2B01G466400.1 | Wheat | nucleus | 28.57 | 23.1 |
| Zm00001d051520_P001 | Maize | nucleus | 27.18 | 22.94 |
| TraesCS2B01G466500.1 | Wheat | nucleus | 28.57 | 22.71 |
| TraesCS2A01G445500.1 | Wheat | nucleus | 28.92 | 22.62 |
| TraesCS2D01G444300.1 | Wheat | nucleus | 28.22 | 22.31 |
| EES12768 | Sorghum | nucleus | 28.22 | 21.54 |
| Os04t0594100-01 | Rice | nucleus | 27.53 | 21.29 |
| EES05685 | Sorghum | nucleus | 28.57 | 21.13 |
| Zm00001d026203_P001 | Maize | nucleus | 27.53 | 20.68 |
| Zm00001d002476_P001 | Maize | nucleus | 28.57 | 20.25 |
| HORVU6Hr1G067380.1 | Barley | nucleus | 27.18 | 17.69 |
| Os04t0517100-01 | Rice | nucleus | 9.76 | 15.73 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| InterPro:Homeobox-like_sf | InterPro:IPR017877 | InterPro:IPR017930 | UniProt:M1DB48 | InterPro:Myb-like_dom | InterPro:Myb_dom |
| PFAM:PF00249 | EnsemblPlantsGene:PGSC0003DMG400035736 | PGSC:PGSC0003DMG400035736 | EnsemblPlants:PGSC0003DMT400086165 | PFscan:PS50090 | PFscan:PS51294 |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF895 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000294FB6C |
| SEG:seg | : | : | : | : | : |
Description
MYB domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400035736]
Coordinates
chr7:+:48090733..48095332
Molecular Weight (calculated)
33520.2 Da
IEP (calculated)
7.293
GRAVY (calculated)
-0.821
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRTPFIDKN GIKRGAWSED EDNKLRAFVE RFGHPNWRQL PKYAGLMRCG KSCRLRWMNY LRPDLKKGNY SLEEDQLIIK LHNKLGNRWS AIAEKLGGRS
101: DNDVKNHWHA HLKKRVRLTN TNSSQSESCQ LNEQNVAATL TWSAIATKLL GRSDNDVKNH WHAHLKKRVT MDQQIIDQSS ESTGRSQNSY KVLEHKEVMK
201: EVSDHLVHDT SIHLEVSSSD HHDLYSDSSS HVNGLDWIVE DNNYMISMEP LPDSFSWTMN PIDNFQTEPF DHIWTQFVDS FWTQPFF
101: DNDVKNHWHA HLKKRVRLTN TNSSQSESCQ LNEQNVAATL TWSAIATKLL GRSDNDVKNH WHAHLKKRVT MDQQIIDQSS ESTGRSQNSY KVLEHKEVMK
201: EVSDHLVHDT SIHLEVSSSD HHDLYSDSSS HVNGLDWIVE DNNYMISMEP LPDSFSWTMN PIDNFQTEPF DHIWTQFVDS FWTQPFF
001: MGRRPCCEKI GLKKGPWSAE EDRILINYIS LHGHPNWRAL PKLAGLLRCG KSCRLRWINY LRPDIKRGNF TPHEEDTIIS LHQLLGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLHHSQ DQNNKEDFVS TTAAEMPTSP QQQSSSSADI SAITTLGNNN DISNSNKDSA TSSEDVLAII DESFWSEVVL MDCDISGNEK
201: NEKKIENWEG SLDRNDKGYN HDMEFWFDHL TSSSCIIGEM SDISEF
101: DNEIKNVWHT HLKKRLHHSQ DQNNKEDFVS TTAAEMPTSP QQQSSSSADI SAITTLGNNN DISNSNKDSA TSSEDVLAII DESFWSEVVL MDCDISGNEK
201: NEKKIENWEG SLDRNDKGYN HDMEFWFDHL TSSSCIIGEM SDISEF
Arabidopsis Description
ATMYB13Transcription factor MYB13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.