Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G265300.1 | Wheat | nucleus | 75.0 | 96.18 |
| TraesCS6B01G292500.1 | Wheat | nucleus | 93.75 | 95.17 |
| HORVU6Hr1G067380.1 | Barley | nucleus | 89.88 | 68.48 |
| Os02t0695200-01 | Rice | nucleus | 64.58 | 63.82 |
| VIT_05s0049g01010.t01 | Wine grape | nucleus | 26.49 | 61.81 |
| Zm00001d051520_P001 | Maize | nucleus | 59.82 | 59.12 |
| PGSC0003DMT400034263 | Potato | mitochondrion | 13.69 | 54.12 |
| EES05685 | Sorghum | nucleus | 61.01 | 52.84 |
| TraesCS2D01G444200.1 | Wheat | nucleus | 49.7 | 52.68 |
| GSMUA_Achr11P... | Banana | nucleus | 43.15 | 50.52 |
| GSMUA_Achr4P28850_001 | Banana | nucleus | 39.58 | 48.9 |
| GSMUA_Achr2P18090_001 | Banana | nucleus | 44.05 | 48.84 |
| TraesCS2D01G444300.1 | Wheat | nucleus | 51.79 | 47.93 |
| GSMUA_Achr5P03520_001 | Banana | nucleus | 42.86 | 47.52 |
| TraesCS6D01G210800.1 | Wheat | nucleus | 30.36 | 46.58 |
| KRH56057 | Soybean | nucleus | 21.73 | 45.62 |
| GSMUA_Achr4P27350_001 | Banana | nucleus | 40.48 | 45.33 |
| VIT_05s0049g01020.t01 | Wine grape | nucleus | 33.04 | 43.87 |
| GSMUA_Achr6P31520_001 | Banana | nucleus | 31.85 | 43.85 |
| TraesCS6D01G211100.1 | Wheat | nucleus | 32.44 | 43.43 |
| TraesCS6D01G210900.1 | Wheat | nucleus | 31.25 | 43.39 |
| KRH34142 | Soybean | nucleus | 27.08 | 43.33 |
| TraesCS6D01G210500.1 | Wheat | nucleus | 30.95 | 43.33 |
| TraesCS6D01G211400.1 | Wheat | nucleus | 32.44 | 42.91 |
| TraesCS6D01G211200.1 | Wheat | nucleus | 30.95 | 42.62 |
| PGSC0003DMT400060168 | Potato | nucleus | 27.68 | 42.27 |
| Solyc06g083900.2.1 | Tomato | nucleus | 31.85 | 41.96 |
| AT1G06180.1 | Thale cress | nucleus | 30.65 | 41.87 |
| Solyc05g055030.1.1 | Tomato | nucleus | 27.08 | 41.74 |
| KRH68789 | Soybean | nucleus | 25.89 | 41.63 |
| KRG97042 | Soybean | nucleus | 26.19 | 41.51 |
| PGSC0003DMT400051682 | Potato | nucleus | 31.85 | 41.47 |
| PGSC0003DMT400034878 | Potato | nucleus | 30.36 | 40.48 |
| VIT_07s0005g03340.t01 | Wine grape | nucleus | 32.14 | 40.15 |
| KRH32183 | Soybean | nucleus | 28.27 | 40.08 |
| Bra021708.1-P | Field mustard | nucleus | 29.76 | 40.0 |
| AT2G31180.1 | Thale cress | nucleus | 29.46 | 39.76 |
| Solyc03g005570.2.1 | Tomato | nucleus | 29.46 | 39.44 |
| Solyc06g053610.2.1 | Tomato | nucleus | 30.95 | 39.25 |
| Bra022831.1-P | Field mustard | nucleus | 28.57 | 39.02 |
| KRH31704 | Soybean | nucleus | 30.65 | 39.02 |
| Solyc09g090130.2.1 | Tomato | nucleus | 30.95 | 38.81 |
| KRH22481 | Soybean | nucleus | 26.19 | 38.77 |
| KRH69121 | Soybean | nucleus | 30.36 | 38.64 |
| Bra015481.1-P | Field mustard | nucleus | 28.87 | 38.49 |
| PGSC0003DMT400044362 | Potato | nucleus | 30.65 | 38.43 |
| TraesCS1D01G154000.1 | Wheat | nucleus | 30.06 | 38.4 |
| Bra018267.1-P | Field mustard | nucleus | 28.87 | 38.34 |
| PGSC0003DMT400042007 | Potato | nucleus | 30.36 | 38.06 |
| Solyc07g054960.1.1 | Tomato | nucleus | 24.4 | 37.96 |
| KRG92419 | Soybean | nucleus | 30.65 | 37.87 |
| KRH56060 | Soybean | nucleus | 25.89 | 37.83 |
| KRH34387 | Soybean | nucleus | 30.65 | 37.45 |
| KRH25458 | Soybean | nucleus | 25.89 | 37.18 |
| TraesCS2D01G378400.2 | Wheat | nucleus | 34.82 | 37.03 |
| VIT_12s0134g00480.t01 | Wine grape | nucleus | 28.27 | 36.97 |
| KRG95664 | Soybean | nucleus | 31.55 | 36.43 |
| KRH67378 | Soybean | nucleus | 31.85 | 36.39 |
| KRH56061 | Soybean | nucleus | 26.19 | 36.36 |
| PGSC0003DMT400097096 | Potato | nucleus | 22.62 | 35.68 |
| PGSC0003DMT400097604 | Potato | nucleus | 22.02 | 35.24 |
| Solyc12g005640.1.1 | Tomato | nucleus | 24.4 | 35.19 |
| PGSC0003DMT400035748 | Potato | nucleus | 24.11 | 35.06 |
| PGSC0003DMT400067318 | Potato | nucleus | 25.3 | 34.98 |
| VIT_12s0134g00490.t01 | Wine grape | nucleus | 26.19 | 34.92 |
| Solyc07g053230.2.1 | Tomato | nucleus | 25.89 | 34.66 |
| PGSC0003DMT400067321 | Potato | nucleus | 25.0 | 34.29 |
| PGSC0003DMT400067322 | Potato | nucleus | 24.7 | 33.88 |
| Solyc07g053240.2.1 | Tomato | nucleus | 25.0 | 33.73 |
| Solyc07g055000.1.1 | Tomato | nucleus | 24.11 | 33.47 |
| KRH56056 | Soybean | nucleus | 23.21 | 33.19 |
| Solyc06g034000.1.1 | Tomato | nucleus | 23.21 | 33.05 |
| Solyc03g093940.1.1 | Tomato | nucleus | 21.13 | 32.72 |
| KRH25468 | Soybean | nucleus | 22.62 | 32.48 |
| Solyc06g033870.1.1 | Tomato | nucleus | 23.81 | 32.39 |
| VIT_00s0203g00170.t01 | Wine grape | nucleus | 25.6 | 32.09 |
| PGSC0003DMT400039029 | Potato | nucleus | 22.92 | 31.69 |
| PGSC0003DMT400051510 | Potato | nucleus | 22.62 | 31.28 |
| PGSC0003DMT400051513 | Potato | nucleus | 22.92 | 31.17 |
| PGSC0003DMT400070912 | Potato | nucleus | 24.11 | 31.15 |
| KRH25461 | Soybean | nucleus | 28.27 | 31.15 |
| PGSC0003DMT400093355 | Potato | nucleus | 22.32 | 31.12 |
| KRH26874 | Soybean | nucleus | 23.21 | 31.08 |
| PGSC0003DMT400021498 | Potato | nucleus | 21.73 | 30.42 |
| Solyc03g093890.2.1 | Tomato | nucleus | 22.62 | 30.04 |
| Solyc03g093930.2.1 | Tomato | nucleus | 21.73 | 29.8 |
| KRH56059 | Soybean | nucleus | 28.27 | 29.32 |
| KRH56058 | Soybean | nucleus | 27.68 | 29.25 |
| KRH26875 | Soybean | nucleus | 27.08 | 29.07 |
| KRH25459 | Soybean | nucleus | 25.6 | 28.57 |
| PGSC0003DMT400086165 | Potato | nucleus | 24.11 | 28.22 |
| PGSC0003DMT400021503 | Potato | nucleus | 14.58 | 25.52 |
| PGSC0003DMT400021501 | Potato | nucleus | 14.88 | 25.38 |
| Solyc07g054980.1.1 | Tomato | nucleus | 26.49 | 19.02 |
| CDX73801 | Canola | nucleus | 2.38 | 11.94 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G249200.1 | EnsemblPlantsGene:TraesCS6D01G249200 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF596 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:352835526..352836629
Molecular Weight (calculated)
36180.1 Da
IEP (calculated)
4.351
GRAVY (calculated)
-0.616
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRAPCCA KVGLNRGSWT PQEDMRLIAY IQKHGHANWR ALPRQAGLLR CGKSCRLRWI NYLRPDLRRG NFTAEEEATV IKLHALLGNK WSKIAACLPG
101: RTDNEIKNVW NTHLKKRASE QKPGVGESKG EAADGDPDTP VPSLSSASSS MTSSEGSNGG AGEQCGTSNE PETMDVPSPL ELELEPVMDI LDMLADAPTE
201: ALATAAPMPT SSCSSSSLTT CAGGGGGVEE LLELPDIDMD ADIWSIIDDD IARLQQGDAT VPCTTKASQE EEGNEWWLQD LEKELGLWGP TEESQPQAGP
301: HDQIGYPGQL SETEGDMVMV SSHPQSRSDH EASNSE
101: RTDNEIKNVW NTHLKKRASE QKPGVGESKG EAADGDPDTP VPSLSSASSS MTSSEGSNGG AGEQCGTSNE PETMDVPSPL ELELEPVMDI LDMLADAPTE
201: ALATAAPMPT SSCSSSSLTT CAGGGGGVEE LLELPDIDMD ADIWSIIDDD IARLQQGDAT VPCTTKASQE EEGNEWWLQD LEKELGLWGP TEESQPQAGP
301: HDQIGYPGQL SETEGDMVMV SSHPQSRSDH EASNSE
001: MGKGRAPCCD KTKVKRGPWS HDEDLKLISF IHKNGHENWR SLPKQAGLLR CGKSCRLRWI NYLRPDVKRG NFSAEEEDTI IKLHQSFGNK WSKIASKLPG
101: RTDNEIKNVW HTHLKKRLSS ETNLNADEAG SKGSLNEEEN SQESSPNASM SFAGSNISSK DDDAQISQMF EHILTYSEFT GMLQEVDKPE LLEMPFDLDP
201: DIWSFIDGSD SFQQPENRAL QESEEDEVDK WFKHLESELG LEENDNQQQQ QQHKQGTEDE HSSSLLESYE LLIH
101: RTDNEIKNVW HTHLKKRLSS ETNLNADEAG SKGSLNEEEN SQESSPNASM SFAGSNISSK DDDAQISQMF EHILTYSEFT GMLQEVDKPE LLEMPFDLDP
201: DIWSFIDGSD SFQQPENRAL QESEEDEVDK WFKHLESELG LEENDNQQQQ QQHKQGTEDE HSSSLLESYE LLIH
Arabidopsis Description
MYB58Transcription factor MYB58 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.