Factsheet for GSMUA_Achr5P03520_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P04700_001
GSMUA_Achr1P14070_001
GSMUA_Achr1P27230_001
GSMUA_Achr2P01120_001
GSMUA_Achr2P12680_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr3P25390_001
GSMUA_Achr4P22570_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P09010_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr6P24410_001
GSMUA_Achr7P01390_001
GSMUA_Achr8P05790_001
GSMUA_Achr9P17280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31180.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr11P...	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr2P01120_001	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr3P09330_001	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr3P25040_001	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr5P07820_001	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr5P27590_001	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr6P15990_001	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr6P23670_001	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr8P05790_001	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr9P17280_001	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr11P...	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr2P01120_001	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr3P09330_001	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr3P25040_001	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr5P07820_001	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr5P27590_001	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr6P15990_001	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr6P23670_001	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr8P05790_001	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr9P17280_001	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr1P04700_001	AT4G14640.1	17360592
AT2G31180.1	GSMUA_Achr1P14070_001	AT4G14640.1	17360592
AT2G31180.1	GSMUA_Achr1P27230_001	AT4G14640.1	17360592
AT2G31180.1	GSMUA_Achr2P12680_001	AT4G14640.1	17360592
AT2G31180.1	GSMUA_Achr3P25390_001	AT4G14640.1	17360592
AT2G31180.1	GSMUA_Achr4P22570_001	AT4G14640.1	17360592
AT2G31180.1	GSMUA_Achr5P09010_001	AT4G14640.1	17360592
AT2G31180.1	GSMUA_Achr6P24410_001	AT4G14640.1	17360592
AT2G31180.1	GSMUA_Achr7P01390_001	AT4G14640.1	17360592
AT2G31180.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr11P...	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr2P01120_001	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr3P09330_001	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr3P25040_001	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr5P07820_001	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr5P27590_001	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr6P15990_001	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr6P23670_001	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr8P05790_001	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr9P17280_001	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P18180_001	Banana	nucleus	31.68	65.75
VIT_05s0049g01010.t01	Wine grape	nucleus	30.36	63.89
GSMUA_Achr4P27350_001	Banana	nucleus	58.75	59.33
GSMUA_Achr11P...	Banana	nucleus	52.48	55.4
PGSC0003DMT400034263	Potato	mitochondrion	15.18	54.12
GSMUA_Achr4P28850_001	Banana	nucleus	46.53	51.84
GSMUA_Achr2P18090_001	Banana	nucleus	51.49	51.49
TraesCS6A01G265300.1	Wheat	nucleus	43.56	50.38
KRH56057	Soybean	nucleus	25.41	48.12
Solyc05g055030.1.1	Tomato	nucleus	33.33	46.33
GSMUA_Achr6P31520_001	Banana	nucleus	37.29	46.31
PGSC0003DMT400060168	Potato	nucleus	33.33	45.91
KRH34142	Soybean	nucleus	31.68	45.71
GSMUA_Achr1P09180_001	Banana	nucleus	34.32	45.22
TraesCS2D01G444200.1	Wheat	nucleus	46.86	44.8
AT1G06180.1	Thale cress	nucleus	36.3	44.72
Os02t0695200-01	Rice	nucleus	50.16	44.71
GSMUA_Achr11P...	Banana	nucleus	33.99	43.83
Zm00001d026204_P001	Maize	nucleus	47.52	43.77
Zm00001d051520_P001	Maize	nucleus	48.84	43.53
KRH68789	Soybean	nucleus	29.7	43.06
KRG97042	Soybean	nucleus	30.03	42.92
PGSC0003DMT400034878	Potato	nucleus	35.64	42.86
TraesCS6D01G249200.1	Wheat	nucleus	47.52	42.86
Bra021708.1-P	Field mustard	nucleus	35.31	42.8
GSMUA_Achr5P14600_001	Banana	nucleus	32.34	42.79
TraesCS6B01G292500.1	Wheat	nucleus	46.53	42.6
TraesCS2B01G466500.1	Wheat	nucleus	50.49	42.38
Bra015481.1-P	Field mustard	nucleus	34.98	42.06
GSMUA_Achr4P21910_001	Banana	nucleus	30.36	42.01
Solyc03g005570.2.1	Tomato	nucleus	34.65	41.83
AT2G31180.1	Thale cress	nucleus	34.32	41.77
KRH31704	Soybean	nucleus	36.3	41.67
KRH69121	Soybean	nucleus	36.3	41.67
Solyc06g053610.2.1	Tomato	nucleus	36.3	41.51
VIT_05s0049g01020.t01	Wine grape	nucleus	34.65	41.5
EES12768	Sorghum	nucleus	51.49	41.49
Os04t0594100-01	Rice	nucleus	50.49	41.24
Solyc06g083900.2.1	Tomato	nucleus	34.65	41.18
Bra022831.1-P	Field mustard	nucleus	33.33	41.06
PGSC0003DMT400042007	Potato	nucleus	36.3	41.04
GSMUA_Achr5P03920_001	Banana	nucleus	32.34	40.83
TraesCS2D01G444300.1	Wheat	nucleus	48.84	40.77
PGSC0003DMT400051682	Potato	nucleus	34.65	40.7
PGSC0003DMT400044362	Potato	nucleus	35.97	40.67
Solyc09g090130.2.1	Tomato	nucleus	35.97	40.67
TraesCS2A01G445500.1	Wheat	nucleus	49.17	40.6
Zm00001d026203_P001	Maize	nucleus	50.83	40.31
TraesCS2B01G466400.1	Wheat	nucleus	46.86	40.0
EES05685	Sorghum	nucleus	51.16	39.95
KRH56061	Soybean	nucleus	31.68	39.67
Bra018267.1-P	Field mustard	nucleus	33.0	39.53
KRH34387	Soybean	nucleus	35.64	39.27
KRH32183	Soybean	nucleus	30.69	39.24
KRH22481	Soybean	nucleus	29.37	39.21
KRG92419	Soybean	nucleus	34.98	38.97
VIT_07s0005g03340.t01	Wine grape	nucleus	34.32	38.66
Zm00001d002476_P001	Maize	nucleus	51.16	38.27
KRH56060	Soybean	nucleus	29.04	38.26
KRH25458	Soybean	nucleus	29.04	37.61
VIT_12s0134g00480.t01	Wine grape	nucleus	31.68	37.35
KRG95664	Soybean	nucleus	35.31	36.77
KRH67378	Soybean	nucleus	35.64	36.73
PGSC0003DMT400067321	Potato	nucleus	29.7	36.73
KRH56056	Soybean	nucleus	28.38	36.6
PGSC0003DMT400067322	Potato	nucleus	29.37	36.33
PGSC0003DMT400067318	Potato	nucleus	29.04	36.21
Solyc12g005640.1.1	Tomato	nucleus	27.72	36.05
KRH25468	Soybean	nucleus	27.72	35.9
Solyc07g053230.2.1	Tomato	nucleus	29.7	35.86
Solyc07g053240.2.1	Tomato	nucleus	29.37	35.74
PGSC0003DMT400035748	Potato	nucleus	27.06	35.5
VIT_12s0134g00490.t01	Wine grape	nucleus	29.37	35.32
Solyc07g054960.1.1	Tomato	nucleus	25.08	35.19
Solyc07g055000.1.1	Tomato	nucleus	27.72	34.71
GSMUA_Achr5P18600_001	Banana	nucleus	37.95	34.53
GSMUA_Achr11P...	Banana	nucleus	34.32	34.32
KRH26874	Soybean	nucleus	28.05	33.86
PGSC0003DMT400097604	Potato	nucleus	23.43	33.81
PGSC0003DMT400039029	Potato	nucleus	26.73	33.33
PGSC0003DMT400097096	Potato	nucleus	23.43	33.33
Solyc03g093940.1.1	Tomato	nucleus	23.76	33.18
HORVU6Hr1G067380.1	Barley	nucleus	47.85	32.88
Solyc06g033870.1.1	Tomato	nucleus	26.73	32.79
Solyc06g034000.1.1	Tomato	nucleus	25.08	32.2
VIT_00s0203g00170.t01	Wine grape	nucleus	28.38	32.09
PGSC0003DMT400070912	Potato	nucleus	27.06	31.54
PGSC0003DMT400051510	Potato	nucleus	25.08	31.28
PGSC0003DMT400051513	Potato	nucleus	25.41	31.17
PGSC0003DMT400093355	Potato	nucleus	24.75	31.12
KRH56059	Soybean	nucleus	32.67	30.56
KRH56058	Soybean	nucleus	32.01	30.5
KRH25461	Soybean	nucleus	30.69	30.49
KRH26875	Soybean	nucleus	31.02	30.03
Solyc03g093930.2.1	Tomato	nucleus	24.09	29.8
Solyc03g093890.2.1	Tomato	nucleus	24.42	29.25
KRH25459	Soybean	nucleus	28.71	28.9
PGSC0003DMT400021498	Potato	nucleus	22.11	27.92
PGSC0003DMT400086165	Potato	nucleus	24.09	25.44
PGSC0003DMT400021503	Potato	nucleus	15.51	24.48
PGSC0003DMT400021501	Potato	nucleus	15.84	24.37
Solyc07g054980.1.1	Tomato	nucleus	30.36	19.66
CDX73801	Canola	nucleus	1.98	8.96

Protein Annotations

EnsemblPlants:GSMUA_Achr5P03520_001	EnsemblPlants:GSMUA_Achr5T03520_001	EnsemblPlantsGene:GSMUA_Achr5G03520_001	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF462	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000295E10A	UniProt:M0SVD1	MapMan:15.5.2.1	:	:

Description

Putative Myb-related protein Zm1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G03520_001]

Coordinates

chr5:+:2445891..2446990

Molecular Weight (calculated)

34036.8 Da

IEP (calculated)

4.598

GRAVY (calculated)

-0.672

Length

303 amino acids

Sequence
(BLAST)

001: MGRGRAPCCA KVGLNKGSWT QEEDLRLIAY IQKHGHGNWR ALPKLAGLLR CGKSCRLRWI NYLRPDIKRG NFTKEEEDTI INLHKLLGNK WSKIASCLPG
101: RTDNEIKNVW NTHLKKRLAS EERRSMSVDK PDDSQSSSSS STYLSCYAHV EKDDPSLDLA DLSIEMFELP MDIWGSPQQE DGTGDESSKV SPCSSSSDAM
201: KDFLVTPDAV IQLESLSPWQ EEAAAMAELT QRNSVEAAEG EDKSLEWLEY LEKELGLCGA SEEMNQGSFV RDAAEQTEME EDPVSSYFQK ELTSTYPLDL
301: RLS

Best Arabidopsis Sequence Match ( AT1G79180.1 )
(BLAST)

001: MGKGRAPCCD KTKVKRGPWS PEEDIKLISF IQKFGHENWR SLPKQSGLLR CGKSCRLRWI NYLRPDLKRG NFTSEEEETI IKLHHNYGNK WSKIASQLPG
101: RTDNEIKNVW HTHLKKRLAQ SSGTADEPAS PCSSDSVSRG KDDKSSHVED SLNRETNHRN ELSTSMSSGG SNQQDDPKID ELRFEYIEEA YSEFNDIIIQ
201: EVDKPDLLEI PFDSDPDIWS FLDTSNSFQQ STANENSSGS RATTEEESDE DEVKKWFKHL ESELGLEEDD NQQQYKEEES SSSSLLKNYE LMIH

Arabidopsis Description

ATMYB63myb domain protein 63 [Source:TAIR;Acc:AT1G79180]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.