Factsheet for HORVU6Hr1G067380.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
TargetP:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G001280.1
HORVU2Hr1G016740.4
HORVU3Hr1G038010.1
HORVU3Hr1G079210.4
HORVU4Hr1G026290.3
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31180.1	HORVU0Hr1G001280.1	AT2G41090.1	17360592
AT2G31180.1	HORVU2Hr1G016740.4	AT2G41090.1	17360592
AT2G31180.1	HORVU3Hr1G038010.1	AT2G41090.1	17360592
AT2G31180.1	HORVU3Hr1G079210.4	AT2G41090.1	17360592
AT2G31180.1	HORVU4Hr1G026290.3	AT2G41090.1	17360592
AT2G31180.1	HORVU5Hr1G014060.1	AT2G41090.1	17360592
AT2G31180.1	HORVU5Hr1G014070.2	AT2G41090.1	17360592
AT2G31180.1	HORVU5Hr1G044710.4	AT2G41090.1	17360592
AT2G31180.1	HORVU0Hr1G001280.1	AT2G41100.1	17360592
AT2G31180.1	HORVU2Hr1G016740.4	AT2G41100.1	17360592
AT2G31180.1	HORVU3Hr1G038010.1	AT2G41100.1	17360592
AT2G31180.1	HORVU3Hr1G079210.4	AT2G41100.1	17360592
AT2G31180.1	HORVU4Hr1G026290.3	AT2G41100.1	17360592
AT2G31180.1	HORVU5Hr1G014060.1	AT2G41100.1	17360592
AT2G31180.1	HORVU5Hr1G014070.2	AT2G41100.1	17360592
AT2G31180.1	HORVU5Hr1G044710.4	AT2G41100.1	17360592
AT2G31180.1	HORVU0Hr1G001280.1	AT5G21274.1	17360592
AT2G31180.1	HORVU2Hr1G016740.4	AT5G21274.1	17360592
AT2G31180.1	HORVU3Hr1G038010.1	AT5G21274.1	17360592
AT2G31180.1	HORVU3Hr1G079210.4	AT5G21274.1	17360592
AT2G31180.1	HORVU4Hr1G026290.3	AT5G21274.1	17360592
AT2G31180.1	HORVU5Hr1G014060.1	AT5G21274.1	17360592
AT2G31180.1	HORVU5Hr1G014070.2	AT5G21274.1	17360592
AT2G31180.1	HORVU5Hr1G044710.4	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G265300.1	Wheat	nucleus	53.74	90.46
TraesCS6D01G249200.1	Wheat	nucleus	68.48	89.88
TraesCS6B01G292500.1	Wheat	nucleus	67.12	89.43
Os02t0695200-01	Rice	nucleus	48.75	63.24
VIT_05s0049g01010.t01	Wine grape	nucleus	19.5	59.72
Zm00001d051520_P001	Maize	nucleus	45.58	59.12
EES05685	Sorghum	nucleus	46.94	53.35
PGSC0003DMT400034263	Potato	mitochondrion	10.2	52.94
GSMUA_Achr11P...	Banana	nucleus	32.88	50.52
GSMUA_Achr2P18090_001	Banana	nucleus	32.88	47.85
GSMUA_Achr5P03520_001	Banana	nucleus	32.88	47.85
GSMUA_Achr4P28850_001	Banana	nucleus	29.48	47.79
GSMUA_Achr4P27350_001	Banana	nucleus	31.07	45.67
KRH56057	Soybean	nucleus	16.33	45.0
GSMUA_Achr6P31520_001	Banana	nucleus	24.04	43.44
Solyc06g083900.2.1	Tomato	nucleus	24.94	43.14
HORVU6Hr1G058640.1	Barley	nucleus	23.81	43.03
PGSC0003DMT400051682	Potato	nucleus	24.94	42.64
KRH34142	Soybean	nucleus	20.18	42.38
VIT_05s0049g01020.t01	Wine grape	nucleus	24.26	42.29
HORVU6Hr1G058580.1	Barley	nucleus	22.9	41.56
PGSC0003DMT400060168	Potato	nucleus	20.63	41.36
KRH32183	Soybean	nucleus	22.22	41.35
AT1G06180.1	Thale cress	nucleus	22.9	41.06
Solyc05g055030.1.1	Tomato	nucleus	20.18	40.83
KRH68789	Soybean	nucleus	19.27	40.67
KRG97042	Soybean	nucleus	19.5	40.57
PGSC0003DMT400034878	Potato	nucleus	22.9	40.08
Solyc06g053610.2.1	Tomato	nucleus	23.81	39.62
Bra021708.1-P	Field mustard	nucleus	22.45	39.6
VIT_07s0005g03340.t01	Wine grape	nucleus	24.04	39.41
KRH31704	Soybean	nucleus	23.58	39.39
HORVU6Hr1G058630.3	Barley	nucleus, plastid	25.85	39.18
Solyc03g005570.2.1	Tomato	nucleus	22.22	39.04
KRH69121	Soybean	nucleus	23.36	39.02
AT2G31180.1	Thale cress	nucleus	22.0	38.96
PGSC0003DMT400044362	Potato	nucleus	23.58	38.81
Solyc09g090130.2.1	Tomato	nucleus	23.58	38.81
Bra022831.1-P	Field mustard	nucleus	21.54	38.62
KRG92419	Soybean	nucleus	23.81	38.6
PGSC0003DMT400042007	Potato	nucleus	23.36	38.43
KRH22481	Soybean	nucleus	19.5	37.89
KRH34387	Soybean	nucleus	23.58	37.82
Bra015481.1-P	Field mustard	nucleus	21.54	37.7
Bra018267.1-P	Field mustard	nucleus	21.54	37.55
HORVU6Hr1G058620.1	Barley	nucleus	24.49	37.24
KRG95664	Soybean	nucleus	24.49	37.11
KRH67378	Soybean	nucleus	24.72	37.07
Solyc07g054960.1.1	Tomato	nucleus	18.14	37.04
KRH56060	Soybean	nucleus	19.27	36.96
KRH25458	Soybean	nucleus	19.27	36.32
VIT_12s0134g00480.t01	Wine grape	nucleus	21.09	36.19
KRH56061	Soybean	nucleus	19.5	35.54
PGSC0003DMT400097096	Potato	nucleus	16.78	34.74
VIT_12s0134g00490.t01	Wine grape	nucleus	19.73	34.52
PGSC0003DMT400035748	Potato	nucleus	17.91	34.2
Solyc12g005640.1.1	Tomato	nucleus	17.91	33.91
PGSC0003DMT400097604	Potato	nucleus	16.1	33.81
PGSC0003DMT400067318	Potato	nucleus	18.59	33.74
Solyc07g053230.2.1	Tomato	nucleus	19.05	33.47
PGSC0003DMT400067321	Potato	nucleus	18.37	33.06
KRH56056	Soybean	nucleus	17.46	32.77
Solyc07g055000.1.1	Tomato	nucleus	17.91	32.64
Solyc06g034000.1.1	Tomato	nucleus	17.46	32.63
Solyc07g053240.2.1	Tomato	nucleus	18.37	32.53
KRH25468	Soybean	nucleus	17.23	32.48
Solyc03g093940.1.1	Tomato	nucleus	15.87	32.26
PGSC0003DMT400067322	Potato	nucleus	17.91	32.24
Solyc06g033870.1.1	Tomato	nucleus	17.91	31.98
KRH25461	Soybean	nucleus	21.77	31.48
KRH26874	Soybean	nucleus	17.91	31.47
VIT_00s0203g00170.t01	Wine grape	nucleus	18.82	30.97
PGSC0003DMT400051510	Potato	nucleus	17.01	30.86
PGSC0003DMT400070912	Potato	nucleus	18.14	30.77
PGSC0003DMT400093355	Potato	nucleus	16.78	30.71
PGSC0003DMT400051513	Potato	nucleus	17.01	30.36
PGSC0003DMT400039029	Potato	nucleus	16.55	30.04
PGSC0003DMT400021498	Potato	nucleus	16.33	30.0
Solyc03g093890.2.1	Tomato	nucleus	17.01	29.64
Solyc03g093930.2.1	Tomato	nucleus	16.33	29.39
KRH56059	Soybean	nucleus	21.54	29.32
KRH56058	Soybean	nucleus	21.09	29.25
KRH26875	Soybean	nucleus	20.18	28.43
KRH25459	Soybean	nucleus	19.27	28.24
PGSC0003DMT400086165	Potato	nucleus	17.69	27.18
PGSC0003DMT400021503	Potato	nucleus	10.88	25.0
PGSC0003DMT400021501	Potato	nucleus	11.11	24.87
Solyc07g054980.1.1	Tomato	nucleus	19.27	18.16
CDX73801	Canola	nucleus	1.59	10.45

Protein Annotations

EnsemblPlants:HORVU6Hr1G067380.1	EnsemblPlantsGene:HORVU6Hr1G067380	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF596	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI000B47BC35	UniProt:A0A287UI13	MapMan:15.5.2.1	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:466723756..466725362

Molecular Weight (calculated)

47674.7 Da

IEP (calculated)

5.515

GRAVY (calculated)

-0.656

Length

441 amino acids

Sequence
(BLAST)

001: PRRRREGGTF CSPGTGVWYL VGKRNSLGGR RIDVRRASQL LGLSPVALPL PRVVVAPHIY TGRARPRSML PTASWTRPNR ARTSEQTAEW SRAADMGRGR
101: APCCAKVGLN RGSWTPQEDM RLIAYIQKHG HANWRALPRQ AGLLRCGKSC RLRWINYLRP DLRRGNFTAD EEATVIKLHG LLGNKWSKIA ACLPGRTDNE
201: IKNVWNTHLK KKASEQKPGP GVGQSKGEAA DGDPDTPVPS LSSASSSMTT SEGSNGGGAG EQCGTSNEPD TTDLPSPLEL ELELEPVMDI LDMLADAAPT
301: EALATAAPMP TSSCSSSSPT TCGGGAEELL ELPDYIDMDA DIWSIIDDDT ARLQQQQGDA TVPCRSTTKA SPEEEGTDWW LEDLEKELGL WGPAGESQPQ
401: VGPHDQIGYP GQLYETEGDV AMGPSSYPQS RSDHHQASSS E

Best Arabidopsis Sequence Match ( AT1G16490.1 )
(BLAST)

001: MGKGRAPCCD KTKVKRGPWS HDEDLKLISF IHKNGHENWR SLPKQAGLLR CGKSCRLRWI NYLRPDVKRG NFSAEEEDTI IKLHQSFGNK WSKIASKLPG
101: RTDNEIKNVW HTHLKKRLSS ETNLNADEAG SKGSLNEEEN SQESSPNASM SFAGSNISSK DDDAQISQMF EHILTYSEFT GMLQEVDKPE LLEMPFDLDP
201: DIWSFIDGSD SFQQPENRAL QESEEDEVDK WFKHLESELG LEENDNQQQQ QQHKQGTEDE HSSSLLESYE LLIH

Arabidopsis Description

MYB58Transcription factor MYB58 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.