Factsheet for GSMUA_Achr11P17870_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P04700_001
GSMUA_Achr1P14070_001
GSMUA_Achr1P27230_001
GSMUA_Achr2P01120_001
GSMUA_Achr2P12680_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr3P25390_001
GSMUA_Achr4P22570_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P09010_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr6P24410_001
GSMUA_Achr7P01390_001
GSMUA_Achr8P05790_001
GSMUA_Achr9P17280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31180.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr11P...	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr2P01120_001	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr3P09330_001	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr3P25040_001	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr5P07820_001	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr5P27590_001	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr6P15990_001	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr6P23670_001	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr8P05790_001	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr9P17280_001	AT2G41090.1	17360592
AT2G31180.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr11P...	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr2P01120_001	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr3P09330_001	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr3P25040_001	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr5P07820_001	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr5P27590_001	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr6P15990_001	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr6P23670_001	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr8P05790_001	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr9P17280_001	AT2G41100.1	17360592
AT2G31180.1	GSMUA_Achr1P04700_001	AT4G14640.1	17360592
AT2G31180.1	GSMUA_Achr1P14070_001	AT4G14640.1	17360592
AT2G31180.1	GSMUA_Achr1P27230_001	AT4G14640.1	17360592
AT2G31180.1	GSMUA_Achr2P12680_001	AT4G14640.1	17360592
AT2G31180.1	GSMUA_Achr3P25390_001	AT4G14640.1	17360592
AT2G31180.1	GSMUA_Achr4P22570_001	AT4G14640.1	17360592
AT2G31180.1	GSMUA_Achr5P09010_001	AT4G14640.1	17360592
AT2G31180.1	GSMUA_Achr6P24410_001	AT4G14640.1	17360592
AT2G31180.1	GSMUA_Achr7P01390_001	AT4G14640.1	17360592
AT2G31180.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr11P...	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr2P01120_001	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr3P09330_001	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr3P25040_001	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr5P07820_001	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr5P27590_001	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr6P15990_001	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr6P23670_001	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr8P05790_001	AT5G21274.1	17360592
AT2G31180.1	GSMUA_Achr9P17280_001	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0049g01010.t01	Wine grape	nucleus	31.36	62.5
GSMUA_Achr4P18180_001	Banana	nucleus	31.71	62.33
GSMUA_Achr4P27350_001	Banana	nucleus	59.23	56.67
PGSC0003DMT400034263	Potato	mitochondrion	15.68	52.94
GSMUA_Achr5P03520_001	Banana	nucleus	55.4	52.48
GSMUA_Achr2P18090_001	Banana	nucleus	54.7	51.82
GSMUA_Achr4P28850_001	Banana	nucleus	46.69	49.26
TraesCS6A01G265300.1	Wheat	nucleus	44.95	49.24
KRH56057	Soybean	nucleus	26.48	47.5
GSMUA_Achr6P31520_001	Banana	nucleus	39.02	45.9
KRH34142	Soybean	nucleus	33.45	45.71
Os02t0695200-01	Rice	nucleus	52.61	44.41
GSMUA_Achr11P...	Banana	nucleus	35.54	43.4
TraesCS6B01G292500.1	Wheat	nucleus	49.83	43.2
PGSC0003DMT400060168	Potato	nucleus	33.1	43.18
TraesCS6D01G249200.1	Wheat	nucleus	50.52	43.15
KRH68789	Soybean	nucleus	31.36	43.06
GSMUA_Achr1P09180_001	Banana	nucleus	34.49	43.04
Solyc05g055030.1.1	Tomato	nucleus	32.4	42.66
Zm00001d051520_P001	Maize	nucleus	50.17	42.35
KRG97042	Soybean	nucleus	31.01	41.98
TraesCS2D01G444200.1	Wheat	nucleus	45.99	41.64
GSMUA_Achr5P14600_001	Banana	nucleus	33.1	41.48
AT1G06180.1	Thale cress	nucleus	35.19	41.06
Zm00001d026204_P001	Maize	nucleus	47.04	41.03
Solyc06g083900.2.1	Tomato	nucleus	36.24	40.78
TraesCS2B01G466500.1	Wheat	nucleus	50.87	40.44
PGSC0003DMT400051682	Potato	nucleus	36.24	40.31
Os04t0594100-01	Rice	nucleus	51.92	40.16
GSMUA_Achr4P21910_001	Banana	nucleus	30.31	39.73
TraesCS2D01G444300.1	Wheat	nucleus	50.17	39.67
TraesCS2B01G466400.1	Wheat	nucleus	48.78	39.44
EES12768	Sorghum	nucleus	51.57	39.36
PGSC0003DMT400034878	Potato	nucleus	34.49	39.29
Bra021708.1-P	Field mustard	nucleus	34.15	39.2
VIT_05s0049g01020.t01	Wine grape	nucleus	34.49	39.13
TraesCS2A01G445500.1	Wheat	nucleus	49.83	38.96
AT2G31180.1	Thale cress	nucleus	33.8	38.96
Bra015481.1-P	Field mustard	nucleus	34.15	38.89
GSMUA_Achr5P03920_001	Banana	nucleus	32.4	38.75
Bra022831.1-P	Field mustard	nucleus	33.1	38.62
Zm00001d026203_P001	Maize	nucleus	51.22	38.48
PGSC0003DMT400042007	Potato	nucleus	35.89	38.43
KRH22481	Soybean	nucleus	30.31	38.33
VIT_07s0005g03340.t01	Wine grape	nucleus	35.89	38.29
KRH31704	Soybean	nucleus	35.19	38.26
KRH69121	Soybean	nucleus	35.19	38.26
Solyc03g005570.2.1	Tomato	nucleus	33.45	38.25
Solyc06g053610.2.1	Tomato	nucleus	35.19	38.11
PGSC0003DMT400044362	Potato	nucleus	35.54	38.06
Solyc09g090130.2.1	Tomato	nucleus	35.54	38.06
KRH32183	Soybean	nucleus	31.36	37.97
Solyc07g054960.1.1	Tomato	nucleus	28.57	37.96
KRH56061	Soybean	nucleus	31.71	37.6
EES05685	Sorghum	nucleus	50.52	37.37
Zm00001d002476_P001	Maize	nucleus	51.57	36.54
KRG92419	Soybean	nucleus	34.49	36.4
Bra018267.1-P	Field mustard	nucleus	32.06	36.36
KRH34387	Soybean	nucleus	34.49	36.0
KRH25468	Soybean	nucleus	29.27	35.9
KRH56056	Soybean	nucleus	29.27	35.74
PGSC0003DMT400097096	Potato	nucleus	26.48	35.68
KRG95664	Soybean	nucleus	35.89	35.4
KRH67378	Soybean	nucleus	35.89	35.03
VIT_12s0134g00490.t01	Wine grape	nucleus	30.66	34.92
PGSC0003DMT400035748	Potato	nucleus	27.87	34.63
KRH56060	Soybean	nucleus	27.53	34.35
Solyc12g005640.1.1	Tomato	nucleus	27.87	34.33
VIT_12s0134g00480.t01	Wine grape	nucleus	30.66	34.24
GSMUA_Achr5P18600_001	Banana	nucleus	39.72	34.23
GSMUA_Achr11P...	Banana	nucleus	35.89	33.99
PGSC0003DMT400097604	Potato	nucleus	24.74	33.81
KRH25458	Soybean	nucleus	27.53	33.76
PGSC0003DMT400067318	Potato	nucleus	28.57	33.74
PGSC0003DMT400067321	Potato	nucleus	28.57	33.47
Solyc07g053230.2.1	Tomato	nucleus	28.92	33.07
Solyc07g053240.2.1	Tomato	nucleus	28.57	32.93
HORVU6Hr1G067380.1	Barley	nucleus	50.52	32.88
PGSC0003DMT400067322	Potato	nucleus	27.53	32.24
Solyc06g033870.1.1	Tomato	nucleus	27.53	31.98
Solyc07g055000.1.1	Tomato	nucleus	26.83	31.82
Solyc03g093940.1.1	Tomato	nucleus	23.69	31.34
KRH26874	Soybean	nucleus	27.18	31.08
VIT_00s0203g00170.t01	Wine grape	nucleus	28.92	30.97
PGSC0003DMT400093355	Potato	nucleus	25.78	30.71
PGSC0003DMT400070912	Potato	nucleus	27.53	30.38
Solyc06g034000.1.1	Tomato	nucleus	24.74	30.08
PGSC0003DMT400039029	Potato	nucleus	25.09	29.63
PGSC0003DMT400051513	Potato	nucleus	25.44	29.55
Solyc03g093930.2.1	Tomato	nucleus	25.09	29.39
Solyc03g093890.2.1	Tomato	nucleus	25.78	29.25
PGSC0003DMT400051510	Potato	nucleus	24.39	28.81
PGSC0003DMT400021498	Potato	nucleus	24.04	28.75
KRH25461	Soybean	nucleus	29.97	28.2
KRH56059	Soybean	nucleus	31.71	28.09
KRH56058	Soybean	nucleus	30.66	27.67
KRH26875	Soybean	nucleus	29.97	27.48
KRH25459	Soybean	nucleus	28.57	27.24
PGSC0003DMT400086165	Potato	nucleus	27.18	27.18
PGSC0003DMT400021503	Potato	nucleus	14.63	21.88
PGSC0003DMT400021501	Potato	nucleus	14.98	21.83
Solyc07g054980.1.1	Tomato	nucleus	29.62	18.16
CDX73801	Canola	nucleus	3.14	13.43

Protein Annotations

EnsemblPlants:GSMUA_Achr11P17870_001	EnsemblPlants:GSMUA_Achr11T17870_001	EnsemblPlantsGene:GSMUA_Achr11G17870_001	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF596	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000296C7FC	UniProt:M0RT67	MapMan:15.5.2.1	:	:

Description

Putative Myb-related protein Zm1 [Source:GMGC_GENE;Acc:GSMUA_Achr11G17870_001]

Coordinates

chr11:+:19406677..19407747

Molecular Weight (calculated)

32032.7 Da

IEP (calculated)

5.774

GRAVY (calculated)

-0.662

Length

287 amino acids

Sequence
(BLAST)

001: MGRGRAPCCA KVGLNKGSWS LEEDMRLIAH IQKHGHGNWR ALPKLAGLLR CGKSCRLRWT NYLRPDIKRG NFTKEEEDTI VKLHKLLGNK WSKIASCLPG
101: RTDNEIKNVW NTHLKKRLVF TEQKPAATND PEEPPPTSSS SSSNHGGNKS HEHQHDPCLH TRDSSAEVIE IPIDPTMDMS SIFDDALSNM TSSSTSTQLS
201: DGLVIPDGDL WSMIEDNSAC KEGNTGAWLE YLERELELEL GLREVAPSDQ DSLTTDGVGM EEDPVSCYFR KEPPLHPLQT FLASEMI

Best Arabidopsis Sequence Match ( AT1G56160.1 )
(BLAST)

001: MGKGRAPCCD KNKVKRGPWS PQEDLTLITF IQKHGHQNWR SLPKLAGLLR CGKSCRLRWI NYLRPDVKRG NFSKKEEDAI IHYHQTLGNK WSKIASFLPG
101: RTDNEIKNVW NTHLKKRLTP SSSSSSLSST HDQSTKADHD KNCDGAQEEI HSGLNESQNS ATSSHHQGEC MHTKPELHEV NGLNEIQFLL DHDDFDDITS
201: EFLQDNDILF PLDSLLHNHQ THISTQEMTR EVTKSQSFDH PQPDIPCGFE DTNEESDLRR QLVESTTPNN EYDEWFNFID NQTYFDDFNF VGEVCL

Arabidopsis Description

ATMYB72MYB72 [Source:UniProtKB/TrEMBL;Acc:A0A178W4I7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.