Factsheet for Solyc06g083900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc03g005240.1.1
Solyc06g053930.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31180.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT2G31180.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT2G31180.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT2G31180.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT2G31180.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT2G31180.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT2G31180.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT2G31180.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT2G31180.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT2G31180.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT2G31180.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT2G31180.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT2G31180.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT2G31180.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT2G31180.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT2G31180.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT2G31180.1	Solyc12g099990.1.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051682	Potato	nucleus	90.98	89.92
GSMUA_Achr4P18180_001	Banana	nucleus	36.08	63.01
CDY15424	Canola	nucleus	43.14	49.77
AT1G06180.1	Thale cress	nucleus	47.06	48.78
GSMUA_Achr1P09180_001	Banana	nucleus	43.92	48.7
GSMUA_Achr11P...	Banana	nucleus	44.31	48.09
TraesCS6D01G210800.1	Wheat	nucleus	41.18	47.95
TraesCS6D01G210500.1	Wheat	nucleus	44.71	47.5
TraesCS6B01G257000.1	Wheat	nucleus	45.1	47.33
Bra021708.1-P	Field mustard	nucleus	46.27	47.2
CDY57089	Canola	nucleus	46.27	47.2
HORVU6Hr1G058640.1	Barley	nucleus	45.1	47.13
CDX84795	Canola	nucleus	45.1	46.75
HORVU6Hr1G058580.1	Barley	nucleus	44.31	46.5
TraesCS6A01G224400.1	Wheat	nucleus	43.92	46.47
CDY23952	Canola	nucleus	44.71	46.34
Bra022831.1-P	Field mustard	nucleus	44.71	46.34
TraesCS6D01G211200.1	Wheat	nucleus	44.31	46.31
TraesCS6D01G210900.1	Wheat	nucleus	43.92	46.28
GSMUA_Achr4P21910_001	Banana	nucleus	39.61	46.12
Solyc05g055030.1.1	Tomato	nucleus	39.22	45.87
TraesCS6D01G211100.1	Wheat	nucleus	45.1	45.82
EES07173	Sorghum	nucleus	46.27	45.74
Solyc06g053610.2.1	Tomato	nucleus	47.45	45.66
TraesCS6B01G257100.1	Wheat	nucleus	45.1	45.63
CDY10182	Canola	nucleus	44.71	45.6
Zm00001d017268_P001	Maize	nucleus	43.53	45.49
TraesCS6B01G257300.1	Wheat	nucleus	45.1	45.45
GSMUA_Achr5P14600_001	Banana	nucleus	40.78	45.41
AT2G31180.1	Thale cress	nucleus	44.31	45.38
TraesCS6B01G257200.1	Wheat	nucleus	45.1	45.28
TraesCS6D01G211400.1	Wheat	nucleus	45.1	45.28
Bra015481.1-P	Field mustard	nucleus	44.71	45.24
CDY47723	Canola	nucleus	44.71	45.24
TraesCS6A01G224100.1	Wheat	nucleus	45.1	44.75
Zm00001d051149_P001	Maize	nucleus	45.49	44.62
TraesCS6A01G224000.1	Wheat	nucleus	44.71	44.53
TraesCS6A01G224200.1	Wheat	nucleus	43.92	44.27
Os02t0624300-01	Rice	nucleus	44.71	44.19
Solyc09g090130.2.1	Tomato	nucleus	46.27	44.03
TraesCS6A01G224300.1	Wheat	nucleus	43.14	44.0
CDY70982	Canola	nucleus	43.53	43.87
Bra018267.1-P	Field mustard	nucleus	43.53	43.87
GSMUA_Achr5P03920_001	Banana	nucleus	41.18	43.75
Solyc03g005570.2.1	Tomato	nucleus	42.75	43.43
TraesCS1A01G155300.1	Wheat	nucleus	43.53	42.21
TraesCS1B01G172500.1	Wheat	nucleus	42.35	41.54
EES12516	Sorghum	nucleus	43.53	40.81
TraesCS1D01G154000.1	Wheat	nucleus	41.57	40.3
HORVU6Hr1G058620.1	Barley	nucleus	45.49	40.0
Zm00001d032694_P001	Maize	nucleus	42.35	39.71
TraesCS6A01G265300.1	Wheat	nucleus	40.78	39.69
Zm00001d025864_P001	Maize	nucleus	42.75	39.35
GSMUA_Achr4P28850_001	Banana	nucleus	41.96	39.34
Zm00001d014029_P001	Maize	nucleus	42.75	39.21
HORVU6Hr1G058630.3	Barley	nucleus, plastid	43.92	38.49
Zm00001d003064_P001	Maize	nucleus	43.92	38.1
Os10t0478300-01	Rice	nucleus	41.18	38.04
Solyc07g054960.1.1	Tomato	nucleus	32.16	37.96
EER91482	Sorghum	nucleus	43.92	37.84
Solyc10g005550.1.1	Tomato	nucleus	35.29	37.04
GSMUA_Achr6P31520_001	Banana	nucleus	35.29	36.89
GSMUA_Achr11P...	Banana	nucleus	40.78	36.24
GSMUA_Achr11P...	Banana	nucleus	42.35	35.64
Solyc12g005640.1.1	Tomato	nucleus	32.55	35.62
Solyc06g033870.1.1	Tomato	nucleus	34.12	35.22
TraesCS2B01G399200.1	Wheat	nucleus	43.53	35.13
Solyc07g053230.2.1	Tomato	nucleus	34.51	35.06
TraesCS2D01G378400.2	Wheat	nucleus	43.14	34.81
GSMUA_Achr5P03520_001	Banana	nucleus	41.18	34.65
GSMUA_Achr2P18090_001	Banana	nucleus	41.18	34.65
Solyc07g055000.1.1	Tomato	nucleus	32.55	34.3
TraesCS2D01G444200.1	Wheat	nucleus	41.96	33.75
Solyc07g053240.2.1	Tomato	nucleus	32.94	33.73
GSMUA_Achr4P27350_001	Banana	nucleus	39.61	33.67
Solyc03g093940.1.1	Tomato	nucleus	28.63	33.64
TraesCS2A01G381900.2	Wheat	nucleus	43.14	33.64
TraesCS6B01G292500.1	Wheat	nucleus	42.35	32.63
Solyc06g034000.1.1	Tomato	nucleus	30.2	32.63
Solyc03g093890.2.1	Tomato	nucleus	32.16	32.41
Zm00001d026204_P001	Maize	nucleus	41.57	32.22
TraesCS6D01G249200.1	Wheat	nucleus	41.96	31.85
Os02t0695200-01	Rice	nucleus	41.96	31.47
GSMUA_Achr5P18600_001	Banana	nucleus	40.78	31.23
Solyc03g093930.2.1	Tomato	nucleus	29.41	30.61
Zm00001d051520_P001	Maize	nucleus	40.78	30.59
TraesCS2B01G466500.1	Wheat	nucleus	42.75	30.19
TraesCS2B01G466400.1	Wheat	nucleus	41.96	30.14
TraesCS2D01G444300.1	Wheat	nucleus	42.75	30.03
TraesCS2A01G445500.1	Wheat	nucleus	42.75	29.7
EES12768	Sorghum	nucleus	43.53	29.52
Os04t0517100-01	Rice	nucleus	20.39	29.21
EES05685	Sorghum	nucleus	43.14	28.35
Os04t0594100-01	Rice	nucleus	41.18	28.3
Zm00001d026203_P001	Maize	nucleus	41.96	28.01
Zm00001d002476_P001	Maize	nucleus	41.57	26.17
HORVU6Hr1G067380.1	Barley	nucleus	43.14	24.94
Solyc07g054980.1.1	Tomato	nucleus	36.86	20.09

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4CAP5	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF695
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc06g083900.2	EnsemblPlants:Solyc06g083900.2.1	UniParc:UPI000276B7C6
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:49196135..49197260

Molecular Weight (calculated)

29493.2 Da

IEP (calculated)

4.964

GRAVY (calculated)

-0.870

Length

255 amino acids

Sequence
(BLAST)

001: MGRSPCCEKL GLKRGPWSKE EDYLLINYIK KNGHPNWRAL PKLAGLLRCG KSCRLRWTNY LRPDIKRGNF THQEEDTIIK LHQVLGNSWS AIAARLPGRT
101: DNEIKNIWHT RLKKKRNESQ LKETQSEPEN TNVDVHLEEA NNSNDKHSEI SNLKINIEIQ QQPSPSSSVS SSSEDSCSNT TATSSESRNQ IMSDNLLEID
201: DDIWSEVVWA QVDDNYVDLS LMEDNYHINS SFDDNWFWDD LFTRSNELML ELPEL

Best Arabidopsis Sequence Match ( AT1G06180.1 )
(BLAST)

001: MGRRPCCEKI GLKKGPWSAE EDRILINYIS LHGHPNWRAL PKLAGLLRCG KSCRLRWINY LRPDIKRGNF TPHEEDTIIS LHQLLGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLHHSQ DQNNKEDFVS TTAAEMPTSP QQQSSSSADI SAITTLGNNN DISNSNKDSA TSSEDVLAII DESFWSEVVL MDCDISGNEK
201: NEKKIENWEG SLDRNDKGYN HDMEFWFDHL TSSSCIIGEM SDISEF

Arabidopsis Description

ATMYB13Transcription factor MYB13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.