Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G31180.1 | CDX73678 | AT3G51920.1 | 17360592 |
| AT2G31180.1 | CDX95314 | AT3G51920.1 | 17360592 |
| AT2G31180.1 | CDY23174 | AT3G51920.1 | 17360592 |
| AT2G31180.1 | CDY06478 | AT4G14640.1 | 17360592 |
| AT2G31180.1 | CDX92401 | AT5G21274.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY57089 | Canola | nucleus | 96.38 | 85.2 |
| CDY70982 | Canola | nucleus | 85.52 | 74.7 |
| AT2G31180.1 | Thale cress | nucleus | 83.71 | 74.3 |
| CDX84795 | Canola | nucleus | 79.19 | 71.14 |
| CDY23952 | Canola | nucleus | 77.83 | 69.92 |
| CDY15425 | Canola | nucleus | 32.13 | 66.36 |
| CDY10182 | Canola | nucleus | 64.25 | 56.8 |
| CDX69310 | Canola | nucleus | 17.19 | 56.72 |
| CDY47723 | Canola | nucleus | 63.8 | 55.95 |
| CDX73800 | Canola | nucleus | 28.05 | 52.1 |
| VIT_07s0005g03340.t01 | Wine grape | nucleus | 57.01 | 46.84 |
| CDY35519 | Canola | nucleus | 50.68 | 44.62 |
| KRH32183 | Soybean | nucleus | 46.61 | 43.46 |
| CDY08989 | Canola | nucleus | 51.58 | 43.18 |
| Solyc06g083900.2.1 | Tomato | nucleus | 49.77 | 43.14 |
| PGSC0003DMT400051682 | Potato | nucleus | 50.23 | 43.02 |
| KRG95664 | Soybean | nucleus | 56.56 | 42.96 |
| KRH67378 | Soybean | nucleus | 57.01 | 42.86 |
| CDX92979 | Canola | nucleus | 52.04 | 42.44 |
| CDX85074 | Canola | nucleus | 53.39 | 41.4 |
| CDX77536 | Canola | nucleus | 53.39 | 41.4 |
| CDY35101 | Canola | nucleus | 37.1 | 39.42 |
| CDY55883 | Canola | nucleus | 37.1 | 39.23 |
| CDX79305 | Canola | nucleus | 43.44 | 38.87 |
| CDY35097 | Canola | nucleus | 23.08 | 36.96 |
| CDX88513 | Canola | nucleus | 43.89 | 35.93 |
| CDY00800 | Canola | nucleus | 35.29 | 35.78 |
| CDX68004 | Canola | nucleus | 42.99 | 35.58 |
| CDX87403 | Canola | nucleus | 43.44 | 35.56 |
| CDY43399 | Canola | nucleus | 37.56 | 35.02 |
| CDY24243 | Canola | nucleus | 36.65 | 34.32 |
| CDX81764 | Canola | nucleus | 42.99 | 34.05 |
| CDY51002 | Canola | nucleus | 42.53 | 33.69 |
| CDY42408 | Canola | nucleus | 40.72 | 30.1 |
| CDY10506 | Canola | nucleus | 40.72 | 30.1 |
| CDX73801 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078FRA7 | UniProt:A0A078FRA7 | EnsemblPlants:CDY15424 | ProteinID:CDY15424 |
| ProteinID:CDY15424.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00085739001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF954 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE5925 | SEG:seg |
Description
BnaC04g41990DBnaC04g41990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FRA7]
Coordinates
chrLK032054:+:763601..765912
Molecular Weight (calculated)
25344.6 Da
IEP (calculated)
6.949
GRAVY (calculated)
-1.000
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCEKM GMKRGPWTPE EDQILINYIH LYGHSNWRAL PKHAGLLRCG KSCRLRWINY LRPDIKRGNF TPQEEQTIIN LHEVLGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLNKNQ NNGGDAKDIN GSNDTTHEDK EPVMVYTTSP QQFSNSTTTL DISDNNNKDD TMSHEDISAL VDESFWSEVV SVDNSSNNEK
201: KIEGWEGLLE RNKNKDEPTM K
101: DNEIKNVWHT HLKKRLNKNQ NNGGDAKDIN GSNDTTHEDK EPVMVYTTSP QQFSNSTTTL DISDNNNKDD TMSHEDISAL VDESFWSEVV SVDNSSNNEK
201: KIEGWEGLLE RNKNKDEPTM K
001: MGRAPCCEKM GVKRGPWTPE EDQILINYIH LYGHSNWRAL PKHAGLLRCG KSCRLRWINY LRPDIKRGNF TPQEEQTIIN LHESLGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLSKNL NNGGDTKDVN GINETTNEDK GSVIVDTASL QQFSNSITTF DISNDNKDDI MSYEDISALI DDSFWSDVIS VDNSNKNEKK
201: IEDWEGLIDR NSKKCSYSNS KLYNDDMEFW FDVFTSNRRI EEFSDIPEF
101: DNEIKNVWHT HLKKRLSKNL NNGGDTKDVN GINETTNEDK GSVIVDTASL QQFSNSITTF DISNDNKDDI MSYEDISALI DDSFWSDVIS VDNSNKNEKK
201: IEDWEGLIDR NSKKCSYSNS KLYNDDMEFW FDVFTSNRRI EEFSDIPEF
Arabidopsis Description
MYB14Transcription factor MYB14 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJX8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.