Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35101 | Canola | nucleus | 97.13 | 97.6 |
| CDX69310 | Canola | nucleus | 26.32 | 82.09 |
| Bra026048.1-P | Field mustard | nucleus | 97.13 | 71.73 |
| AT1G16490.1 | Thale cress | nucleus | 75.12 | 57.3 |
| CDX81764 | Canola | nucleus | 73.21 | 54.84 |
| CDY51002 | Canola | nucleus | 73.21 | 54.84 |
| CDX73800 | Canola | nucleus | 31.1 | 54.62 |
| CDX79305 | Canola | nucleus | 62.68 | 53.04 |
| CDX88513 | Canola | nucleus | 66.99 | 51.85 |
| CDX87403 | Canola | nucleus | 66.03 | 51.11 |
| CDX68004 | Canola | nucleus | 65.07 | 50.94 |
| PGSC0003DMT400029235 | Potato | nucleus | 46.89 | 41.0 |
| Solyc10g005550.1.1 | Tomato | nucleus | 46.89 | 40.33 |
| CDY35097 | Canola | nucleus | 26.32 | 39.86 |
| PGSC0003DMT400089342 | Potato | nucleus | 45.93 | 39.83 |
| CDY15424 | Canola | nucleus | 39.23 | 37.1 |
| CDX84795 | Canola | nucleus | 42.11 | 35.77 |
| CDY23952 | Canola | nucleus | 42.11 | 35.77 |
| CDY57089 | Canola | nucleus | 42.11 | 35.2 |
| CDY10182 | Canola | nucleus | 42.11 | 35.2 |
| KRH13720 | Soybean | nucleus | 57.89 | 35.07 |
| CDY47723 | Canola | nucleus | 42.11 | 34.92 |
| VIT_19s0085g00050.t01 | Wine grape | nucleus | 59.33 | 34.07 |
| CDY24243 | Canola | nucleus | 38.28 | 33.9 |
| CDY43399 | Canola | nucleus | 38.28 | 33.76 |
| CDY70982 | Canola | nucleus | 40.67 | 33.6 |
| CDY00800 | Canola | nucleus | 34.93 | 33.49 |
| CDY35519 | Canola | nucleus | 40.19 | 33.47 |
| CDY42408 | Canola | nucleus | 47.85 | 33.44 |
| CDY10506 | Canola | nucleus | 47.37 | 33.11 |
| CDY08989 | Canola | nucleus | 40.67 | 32.2 |
| KRH43737 | Soybean | nucleus | 57.42 | 31.09 |
| CDX77536 | Canola | nucleus | 42.11 | 30.88 |
| CDX92979 | Canola | nucleus | 39.71 | 30.63 |
| CDX85074 | Canola | nucleus | 41.63 | 30.53 |
| CDY15425 | Canola | nucleus | 5.74 | 11.21 |
| CDX73801 | Canola | nucleus | 2.39 | 7.46 |
Protein Annotations
| EnsemblPlants:CDY55883 | EnsemblPlantsGene:GSBRNA2T00017484001 | Gene3D:1.10.10.60 | GO:A0A078IZB5 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF462 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDY55883 | ProteinID:CDY55883.1 |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EEBC16 | UniProt:A0A078IZB5 | MapMan:15.5.2.1 | : |
Description
BnaCnng29520DBnaCnng29520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZB5]
Coordinates
chrLK033436:+:47253..48277
Molecular Weight (calculated)
24241.6 Da
IEP (calculated)
6.513
GRAVY (calculated)
-0.841
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKGRAPCCD KTKVKRGQWS YDEDLKLISF INKYGHENWR SLPEQAGLLR CGKSCRLRWI NYLRPDVKRG NFSVDEEETI IKLHQSIGSK WSKIASKLPG
101: RTDNEIKNVT LQEVDKPELL EIPFGVDPEI WSFINGLDSF QQPENSLAPW AHQDSQEDEV EKWFKHLETE LGLEENDSQQ QQSIVMLTKN HRHHHLGELR
201: ALDTPLTKP
101: RTDNEIKNVT LQEVDKPELL EIPFGVDPEI WSFINGLDSF QQPENSLAPW AHQDSQEDEV EKWFKHLETE LGLEENDSQQ QQSIVMLTKN HRHHHLGELR
201: ALDTPLTKP
001: MGKGRAPCCD KTKVKRGPWS HDEDLKLISF IHKNGHENWR SLPKQAGLLR CGKSCRLRWI NYLRPDVKRG NFSAEEEDTI IKLHQSFGNK WSKIASKLPG
101: RTDNEIKNVW HTHLKKRLSS ETNLNADEAG SKGSLNEEEN SQESSPNASM SFAGSNISSK DDDAQISQMF EHILTYSEFT GMLQEVDKPE LLEMPFDLDP
201: DIWSFIDGSD SFQQPENRAL QESEEDEVDK WFKHLESELG LEENDNQQQQ QQHKQGTEDE HSSSLLESYE LLIH
101: RTDNEIKNVW HTHLKKRLSS ETNLNADEAG SKGSLNEEEN SQESSPNASM SFAGSNISSK DDDAQISQMF EHILTYSEFT GMLQEVDKPE LLEMPFDLDP
201: DIWSFIDGSD SFQQPENRAL QESEEDEVDK WFKHLESELG LEENDNQQQQ QQHKQGTEDE HSSSLLESYE LLIH
Arabidopsis Description
MYB58Transcription factor MYB58 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.