Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014929.1-P | Field mustard | nucleus | 98.25 | 98.25 |
| CDX77536 | Canola | nucleus | 97.54 | 97.54 |
| CDX92979 | Canola | nucleus | 83.51 | 87.82 |
| CDY35519 | Canola | nucleus | 74.74 | 84.86 |
| CDY08989 | Canola | nucleus | 76.49 | 82.58 |
| AT3G23250.1 | Thale cress | nucleus | 82.46 | 82.46 |
| CDX69310 | Canola | nucleus | 14.39 | 61.19 |
| CDX73800 | Canola | nucleus | 23.16 | 55.46 |
| CDY15424 | Canola | nucleus | 41.4 | 53.39 |
| CDY57089 | Canola | nucleus | 43.51 | 49.6 |
| CDY10182 | Canola | nucleus | 42.46 | 48.4 |
| CDY70982 | Canola | nucleus | 42.81 | 48.22 |
| CDY47723 | Canola | nucleus | 42.46 | 48.02 |
| CDX84795 | Canola | nucleus | 41.05 | 47.56 |
| CDY23952 | Canola | nucleus | 40.7 | 47.15 |
| CDY35101 | Canola | nucleus | 30.53 | 41.83 |
| CDY55883 | Canola | nucleus | 30.53 | 41.63 |
| CDX79305 | Canola | nucleus | 35.44 | 40.89 |
| CDY00800 | Canola | nucleus | 29.47 | 38.53 |
| CDX81764 | Canola | nucleus | 37.54 | 38.35 |
| CDX88513 | Canola | nucleus | 36.14 | 38.15 |
| CDY24243 | Canola | nucleus | 31.58 | 38.14 |
| CDY51002 | Canola | nucleus | 37.19 | 37.99 |
| CDY43399 | Canola | nucleus | 31.58 | 37.97 |
| CDX68004 | Canola | nucleus | 35.44 | 37.83 |
| CDX87403 | Canola | nucleus | 35.79 | 37.78 |
| CDY35097 | Canola | nucleus | 17.54 | 36.23 |
| CDY42408 | Canola | nucleus | 33.33 | 31.77 |
| CDY10506 | Canola | nucleus | 33.33 | 31.77 |
| CDY15425 | Canola | nucleus | 8.42 | 22.43 |
| CDX73801 | Canola | nucleus | 0.7 | 2.99 |
Protein Annotations
| EnsemblPlants:CDX85074 | EnsemblPlantsGene:GSBRNA2T00142540001 | Gene3D:1.10.10.60 | GO:A0A078D9Y9 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF695 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX85074 | ProteinID:CDX85074.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EF077F | MapMan:15.5.2.1 | : |
Description
BnaC07g08320D
Coordinates
chrLK031840:+:194686..195843
Molecular Weight (calculated)
32140.6 Da
IEP (calculated)
5.238
GRAVY (calculated)
-0.652
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVPCCEKM GLNRGPWTPE EDQILISFIH KHGHSNWRAL PKQAGLLRCG KSCRLRWMNY LKPDIKRGNF TKEEEDAIIS LHQILGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLEDYQ LAKPKTSNTK KATKPKSQSV PTKLNSTGRE LEFLNSSNPS FESLLSASPS TSDAVSSVTL MSHEGHNNEA KMDNKSGDIN
201: IADQDCSSFE IFGADIDESF WNEALYSQDE SNYALNLDVA GFDEIQQEFQ QLGPVENEMV FDSEMDFWFD VLARTGGEQD LLAGL
101: DNEIKNVWHT HLKKRLEDYQ LAKPKTSNTK KATKPKSQSV PTKLNSTGRE LEFLNSSNPS FESLLSASPS TSDAVSSVTL MSHEGHNNEA KMDNKSGDIN
201: IADQDCSSFE IFGADIDESF WNEALYSQDE SNYALNLDVA GFDEIQQEFQ QLGPVENEMV FDSEMDFWFD VLARTGGEQD LLAGL
001: MGRAPCCEKM GLKRGPWTPE EDQILVSFIL NHGHSNWRAL PKQAGLLRCG KSCRLRWMNY LKPDIKRGNF TKEEEDAIIS LHQILGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLEDYQ PAKPKTSNKK KGTKPKSESV ITSSNSTRSE SELADSSNPS GESLFSTSPS TSEVSSMTLI SHDGYSNEIN MDNKPGDIST
201: IDQECVSFET FGADIDESFW KETLYSQDEH NYVSNDLEVA GLVEIQQEFQ NLGSANNEMI FDSEMDFWFD VLARTGGEQD LLAGL
101: DNEIKNVWHT HLKKRLEDYQ PAKPKTSNKK KGTKPKSESV ITSSNSTRSE SELADSSNPS GESLFSTSPS TSEVSSMTLI SHDGYSNEIN MDNKPGDIST
201: IDQECVSFET FGADIDESFW KETLYSQDEH NYVSNDLEVA GLVEIQQEFQ NLGSANNEMI FDSEMDFWFD VLARTGGEQD LLAGL
Arabidopsis Description
MYB15Transcription factor MYB15 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTC4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.