Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73801 | Canola | nucleus | 27.98 | 91.04 |
| CDY43399 | Canola | nucleus | 83.49 | 76.79 |
| CDX73800 | Canola | nucleus | 41.28 | 75.63 |
| CDY24243 | Canola | nucleus | 81.65 | 75.42 |
| AT3G12820.1 | Thale cress | nucleus | 75.69 | 69.04 |
| PGSC0003DMT400089342 | Potato | nucleus | 50.92 | 46.06 |
| CDX69310 | Canola | nucleus | 13.3 | 43.28 |
| PGSC0003DMT400029235 | Potato | nucleus | 44.5 | 40.59 |
| Solyc10g005550.1.1 | Tomato | nucleus | 44.04 | 39.51 |
| CDY35097 | Canola | nucleus | 24.31 | 38.41 |
| CDX79305 | Canola | nucleus | 41.74 | 36.84 |
| CDY10506 | Canola | nucleus | 50.0 | 36.45 |
| CDY42408 | Canola | nucleus | 49.54 | 36.12 |
| CDY15424 | Canola | nucleus | 35.78 | 35.29 |
| CDY35101 | Canola | nucleus | 33.49 | 35.1 |
| CDY55883 | Canola | nucleus | 33.49 | 34.93 |
| CDX88513 | Canola | nucleus | 43.12 | 34.81 |
| CDX87403 | Canola | nucleus | 43.12 | 34.81 |
| CDX81764 | Canola | nucleus | 44.04 | 34.41 |
| CDY10182 | Canola | nucleus | 39.45 | 34.4 |
| CDY47723 | Canola | nucleus | 39.45 | 34.13 |
| CDY51002 | Canola | nucleus | 43.58 | 34.05 |
| CDX68004 | Canola | nucleus | 40.83 | 33.33 |
| CDY35519 | Canola | nucleus | 37.16 | 32.27 |
| CDX92979 | Canola | nucleus | 39.45 | 31.73 |
| CDY70982 | Canola | nucleus | 36.7 | 31.62 |
| CDY57089 | Canola | nucleus | 36.24 | 31.6 |
| CDY23952 | Canola | nucleus | 35.32 | 31.3 |
| CDX84795 | Canola | nucleus | 35.32 | 31.3 |
| CDY08989 | Canola | nucleus | 36.24 | 29.92 |
| CDX85074 | Canola | nucleus | 38.53 | 29.47 |
| CDX77536 | Canola | nucleus | 38.53 | 29.47 |
| KRH13720 | Soybean | nucleus | 43.58 | 27.54 |
| KRH43737 | Soybean | nucleus | 47.25 | 26.68 |
| VIT_19s0085g00050.t01 | Wine grape | nucleus | 42.66 | 25.55 |
| CDY15425 | Canola | nucleus | 1.38 | 2.8 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078EFB9 | EnsemblPlants:CDY00800 | ProteinID:CDY00800 | ProteinID:CDY00800.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00110700001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF883 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EDFB06 | SEG:seg | : |
Description
BnaC03g37840D
Coordinates
chrLK031921:-:1207873..1209372
Molecular Weight (calculated)
24920.1 Da
IEP (calculated)
6.509
GRAVY (calculated)
-0.716
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: LKRGPWSDEE SERLNAFILK HGHHNWRSLP KLAGLARCGK SCRLRWLNYL RPGLKRGNFT KEEEDTIIHL HQVLGNKWSK IASHLPGRTD NEIKNVWNTH
101: LKKRSVKSNS ASDVTNQASS VSSSSSSVST DVINSEKHNQ EEELENILVE HIACGFEVNA PQSLEYLFED RQIPPLSISK PDSLEIHMQS DDDLCSRMVE
201: PGLDVYNEWL SYFDNQTL
101: LKKRSVKSNS ASDVTNQASS VSSSSSSVST DVINSEKHNQ EEELENILVE HIACGFEVNA PQSLEYLFED RQIPPLSISK PDSLEIHMQS DDDLCSRMVE
201: PGLDVYNEWL SYFDNQTL
001: MGNRRAPCCD KSQVKRGPWS DEESERLRSF ILKNGHQNWR SLPKLAGLMR CGKSCRLRWI NYLRPGLKRG NFTKEEEDTI IHLHQAYGNK WSKIASNFPG
101: RTDNEIKNVW NTHLKKRLVK RSISSSSSDV TNHSVSSTSS SSSSISSVLQ DVIIKSERPN QEEEFGEILV EQMACGFEVD APQSLECLFD DSQVPPPISK
201: PDSLQTHGKS SDHEFWSRLI EPGFDDYNEW LIFLDNQTC
101: RTDNEIKNVW NTHLKKRLVK RSISSSSSDV TNHSVSSTSS SSSSISSVLQ DVIIKSERPN QEEEFGEILV EQMACGFEVD APQSLECLFD DSQVPPPISK
201: PDSLQTHGKS SDHEFWSRLI EPGFDDYNEW LIFLDNQTC
Arabidopsis Description
AtMYB10Transcription factor MYB10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTV4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.